Wall clock time and date at job start Mon Mar 30 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37594 * 120.05731 * 2 1 4 4 C 1.38788 * 120.27105 * 179.76335 * 3 2 1 5 5 F 1.35095 * 119.80996 * 180.27748 * 4 3 2 6 6 C 1.39468 * 120.38718 * 0.52170 * 4 3 2 7 7 O 1.35938 * 119.94406 * 179.76171 * 6 4 3 8 8 C 1.42900 * 117.00490 * 179.71766 * 7 6 4 9 9 F 1.39907 * 109.46469 * 59.99989 * 8 7 6 10 10 F 1.39894 * 109.47201 * 300.00553 * 8 7 6 11 11 C 1.37921 * 120.11320 * 359.47908 * 6 4 3 12 12 C 1.40725 * 119.73527 * 0.25961 * 11 6 4 13 13 C 1.41305 * 120.19775 * 179.97438 * 12 11 6 14 14 H 1.07998 * 120.00039 * 153.66907 * 13 12 11 15 15 C 1.39906 * 120.00013 * 333.67657 * 13 12 11 16 16 N 1.30866 * 119.99688 * 343.80782 * 15 13 12 17 17 Si 1.86797 * 120.00109 * 163.80767 * 15 13 12 18 18 H 1.48501 * 109.47176 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47127 * 119.99995 * 17 15 13 20 20 H 1.48502 * 109.46920 * 240.00012 * 17 15 13 21 21 H 1.08999 * 109.47118 * 269.97460 * 1 2 3 22 22 H 1.09000 * 109.47555 * 29.98007 * 1 2 3 23 23 H 1.09006 * 109.46839 * 149.97851 * 1 2 3 24 24 H 1.08000 * 119.86691 * 0.02751 * 3 2 1 25 25 H 1.08996 * 109.47550 * 179.97438 * 8 7 6 26 26 H 1.08001 * 120.13570 * 180.27821 * 11 6 4 27 27 H 0.96998 * 119.99620 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1909 0.0000 4 6 3.5840 1.1961 0.0050 5 9 4.2512 2.3708 0.0106 6 6 4.2940 -0.0043 -0.0010 7 8 5.6533 0.0113 -0.0010 8 6 6.3167 -1.2544 -0.0009 9 9 5.9490 -1.9735 -1.1433 10 9 5.9491 -1.9736 1.1412 11 6 3.6194 -1.2073 -0.0010 12 6 2.2122 -1.2184 -0.0005 13 6 1.5111 -2.4452 -0.0011 14 1 0.5155 -2.4984 0.4141 15 6 2.1067 -3.5911 -0.5393 16 7 3.1546 -3.4807 -1.3154 17 14 1.4063 -5.2784 -0.1500 18 1 0.2296 -5.1318 0.7440 19 1 0.9909 -5.9448 -1.4105 20 1 2.4419 -6.1002 0.5263 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8899 -0.5142 24 1 1.6549 2.1255 0.0004 25 1 7.3956 -1.0991 -0.0014 26 1 4.1688 -2.1371 -0.0010 27 1 3.5677 -4.2751 -1.6883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661340.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:46 Heat of formation + Delta-G solvation = -184.595998 kcal Electronic energy + Delta-G solvation = -18246.219440 eV Core-core repulsion = 14746.719208 eV Total energy + Delta-G solvation = -3499.500232 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.56970 -47.44777 -46.56826 -38.56848 -36.71444 -33.64755 -30.86888 -29.50386 -26.52178 -25.67888 -24.00918 -21.56204 -20.22719 -18.38515 -17.45633 -17.14653 -16.86433 -15.53743 -15.37022 -15.04639 -14.47925 -14.19948 -13.48414 -13.20795 -12.97773 -12.81783 -12.75034 -12.48662 -12.38756 -12.22006 -11.93382 -11.57717 -11.28363 -11.21182 -10.76770 -10.67302 -9.96564 -9.83048 -9.70811 -9.20775 -7.52883 -7.14293 -6.83839 -4.50400 2.53260 2.67273 3.01660 3.04950 3.07501 3.35811 3.83972 4.15277 4.38889 4.95428 5.25982 5.43396 5.66445 5.96940 6.26648 6.39024 6.44522 6.57765 6.70556 6.90499 7.04298 7.08458 7.48628 7.57056 7.67411 7.87808 8.10446 8.41924 8.70491 8.74002 10.04995 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.011908 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.155698 B = 2350.850864 C = 3529.053979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.191 4.191 3 C -0.092 4.092 4 C -0.054 4.054 5 F -0.165 7.165 6 C 0.083 3.917 7 O -0.331 6.331 8 C 0.412 3.588 9 F -0.188 7.188 10 F -0.204 7.204 11 C -0.214 4.214 12 C 0.128 3.872 13 C -0.448 4.448 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.774 5.774 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.271 1.271 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.164 0.836 26 H 0.147 0.853 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 0.141 1.439 3.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.192 4.192 3 C -0.111 4.111 4 C -0.075 4.075 5 F -0.145 7.145 6 C 0.040 3.960 7 O -0.250 6.250 8 C 0.321 3.679 9 F -0.170 7.170 10 F -0.186 7.186 11 C -0.233 4.233 12 C 0.125 3.875 13 C -0.476 4.476 14 H 0.105 0.895 15 C -0.148 4.148 16 N -0.398 5.398 17 Si 0.733 3.267 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.196 1.196 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.128 0.872 25 H 0.180 0.820 26 H 0.164 0.836 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.019 0.159 1.281 3.284 hybrid contribution -0.076 -0.904 0.036 0.908 sum 2.944 -0.745 1.317 3.310 Atomic orbital electron populations 1.20384 0.92536 1.00998 1.00046 1.19624 0.94970 0.92059 1.12581 1.20213 0.90622 0.97892 1.02402 1.16455 0.89147 0.77884 1.23984 1.91283 1.81105 1.46061 1.96028 1.18755 0.79460 0.94557 1.03203 1.86469 1.19877 1.29213 1.89418 1.23035 0.96200 0.76165 0.72490 1.93155 1.93541 1.78993 1.51326 1.93061 1.93723 1.79440 1.52390 1.21675 0.96111 0.94864 1.10685 1.17278 0.90683 0.92095 0.87452 1.19616 1.02177 0.92144 1.33652 0.89510 1.26018 0.94295 1.01699 0.92748 1.69835 1.17368 1.32132 1.20488 0.86231 0.80118 0.80967 0.79335 1.18208 1.19820 1.19584 0.93604 0.93993 0.91646 0.87158 0.81986 0.83559 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.40 36.00 0.34 -1.30 15 2 C -0.19 -4.52 5.94 -103.90 -0.62 -5.13 15 3 C -0.09 -2.13 9.65 -39.61 -0.38 -2.51 15 4 C -0.05 -1.34 7.33 -38.92 -0.29 -1.63 15 5 F -0.17 -3.93 17.10 2.25 0.04 -3.89 15 6 C 0.08 2.08 6.49 -39.24 -0.25 1.83 15 7 O -0.33 -7.34 10.29 -19.54 -0.20 -7.54 15 8 C 0.41 7.52 5.98 101.05 0.60 8.13 15 9 F -0.19 -3.92 15.58 2.25 0.04 -3.89 15 10 F -0.20 -4.08 15.58 2.25 0.04 -4.04 15 11 C -0.21 -5.57 6.87 -38.76 -0.27 -5.83 15 12 C 0.13 3.33 5.56 -106.83 -0.59 2.73 15 13 C -0.45 -11.28 8.10 -37.79 -0.31 -11.58 15 14 H 0.09 2.07 6.89 -52.49 -0.36 1.70 15 15 C 0.07 1.75 5.16 -17.34 -0.09 1.66 15 16 N -0.77 -19.46 10.98 55.55 0.61 -18.85 15 17 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 15 18 H -0.26 -5.04 7.11 56.52 0.40 -4.63 15 19 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.04 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.06 1.30 6.78 -51.93 -0.35 0.95 15 24 H 0.11 2.22 8.06 -52.49 -0.42 1.79 15 25 H 0.16 1.92 8.14 -51.93 -0.42 1.50 15 26 H 0.15 3.85 3.25 -52.49 -0.17 3.68 15 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 LS Contribution 248.54 15.07 3.75 3.75 Total: -1.00 -28.74 248.54 -4.33 -33.06 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -1.71 Total: 2.04 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.85 Total: -13.63 kcal Atomic # 7 Polarization: -19.46 SS G_CDS: 0.61 Total: -18.85 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.20 Total: -7.54 kcal Atomic # 9 Polarization: -11.93 SS G_CDS: 0.11 Total: -11.82 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.74 -4.33 -33.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661340.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.533 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds