Wall clock time and date at job start Mon Mar 30 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37594 * 120.05731 * 2 1 4 4 C 1.38788 * 120.27105 * 179.76335 * 3 2 1 5 5 F 1.35095 * 119.80996 * 180.27748 * 4 3 2 6 6 C 1.39468 * 120.38718 * 0.52170 * 4 3 2 7 7 O 1.35938 * 119.94406 * 179.76171 * 6 4 3 8 8 C 1.42900 * 117.00490 * 179.71766 * 7 6 4 9 9 F 1.39907 * 109.46469 * 59.99989 * 8 7 6 10 10 F 1.39894 * 109.47201 * 300.00553 * 8 7 6 11 11 C 1.37921 * 120.11320 * 359.47908 * 6 4 3 12 12 C 1.40725 * 119.73527 * 0.25961 * 11 6 4 13 13 C 1.41305 * 120.19775 * 179.97438 * 12 11 6 14 14 H 1.07998 * 120.00039 * 153.66907 * 13 12 11 15 15 C 1.39906 * 120.00013 * 333.67657 * 13 12 11 16 16 N 1.30866 * 119.99688 * 343.80782 * 15 13 12 17 17 Si 1.86797 * 120.00109 * 163.80767 * 15 13 12 18 18 H 1.48501 * 109.47176 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47127 * 119.99995 * 17 15 13 20 20 H 1.48502 * 109.46920 * 240.00012 * 17 15 13 21 21 H 1.08999 * 109.47118 * 269.97460 * 1 2 3 22 22 H 1.09000 * 109.47555 * 29.98007 * 1 2 3 23 23 H 1.09006 * 109.46839 * 149.97851 * 1 2 3 24 24 H 1.08000 * 119.86691 * 0.02751 * 3 2 1 25 25 H 1.08996 * 109.47550 * 179.97438 * 8 7 6 26 26 H 1.08001 * 120.13570 * 180.27821 * 11 6 4 27 27 H 0.96998 * 119.99620 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1909 0.0000 4 6 3.5840 1.1961 0.0050 5 9 4.2512 2.3708 0.0106 6 6 4.2940 -0.0043 -0.0010 7 8 5.6533 0.0113 -0.0010 8 6 6.3167 -1.2544 -0.0009 9 9 5.9490 -1.9735 -1.1433 10 9 5.9491 -1.9736 1.1412 11 6 3.6194 -1.2073 -0.0010 12 6 2.2122 -1.2184 -0.0005 13 6 1.5111 -2.4452 -0.0011 14 1 0.5155 -2.4984 0.4141 15 6 2.1067 -3.5911 -0.5393 16 7 3.1546 -3.4807 -1.3154 17 14 1.4063 -5.2784 -0.1500 18 1 0.2296 -5.1318 0.7440 19 1 0.9909 -5.9448 -1.4105 20 1 2.4419 -6.1002 0.5263 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8899 -0.5142 24 1 1.6549 2.1255 0.0004 25 1 7.3956 -1.0991 -0.0014 26 1 4.1688 -2.1371 -0.0010 27 1 3.5677 -4.2751 -1.6883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661340.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:46 Heat of formation + Delta-G solvation = -201.075371 kcal Electronic energy + Delta-G solvation = -18246.934040 eV Core-core repulsion = 14746.719208 eV Total energy + Delta-G solvation = -3500.214831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.10952 -49.31860 -48.12642 -40.33915 -38.46921 -35.48041 -32.61058 -31.36774 -28.16991 -27.44515 -25.67400 -23.39396 -21.99935 -20.11601 -19.09333 -18.71013 -18.62328 -17.30742 -17.12382 -16.82850 -16.32394 -15.89419 -15.10947 -14.92980 -14.61292 -14.55958 -14.40941 -14.12168 -14.03078 -13.98754 -13.60797 -13.14568 -13.01613 -12.81747 -12.47410 -12.27256 -11.72589 -11.60901 -11.48014 -11.01193 -9.41287 -8.98901 -8.65025 -6.40613 0.68531 0.82057 1.39892 1.46182 1.55214 1.84033 2.18464 2.56479 2.71770 3.47361 3.64157 3.81547 3.84290 4.22318 4.58097 4.62316 4.76210 5.00819 5.03645 5.12619 5.21352 5.39999 5.60670 5.72760 5.89048 6.01954 6.24757 6.54998 6.83546 6.86709 8.25940 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.011908 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.155698 B = 2350.850864 C = 3529.053979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.200 4.200 3 C -0.092 4.092 4 C -0.077 4.077 5 F -0.164 7.164 6 C 0.074 3.926 7 O -0.340 6.340 8 C 0.403 3.597 9 F -0.206 7.206 10 F -0.216 7.216 11 C -0.239 4.239 12 C 0.097 3.903 13 C -0.469 4.469 14 H 0.095 0.905 15 C 0.032 3.968 16 N -0.804 5.804 17 Si 0.981 3.019 18 H -0.251 1.251 19 H -0.265 1.265 20 H -0.270 1.270 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.141 0.859 25 H 0.235 0.765 26 H 0.139 0.861 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -0.168 1.688 2.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.202 4.202 3 C -0.111 4.111 4 C -0.098 4.098 5 F -0.143 7.143 6 C 0.031 3.969 7 O -0.259 6.259 8 C 0.313 3.687 9 F -0.188 7.188 10 F -0.198 7.198 11 C -0.259 4.259 12 C 0.094 3.906 13 C -0.497 4.497 14 H 0.113 0.887 15 C -0.186 4.186 16 N -0.428 5.428 17 Si 0.802 3.198 18 H -0.174 1.174 19 H -0.190 1.190 20 H -0.194 1.194 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.159 0.841 25 H 0.251 0.749 26 H 0.156 0.844 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.472 -0.134 1.529 2.910 hybrid contribution 0.146 -0.767 -0.056 0.783 sum 2.618 -0.901 1.473 3.136 Atomic orbital electron populations 1.20396 0.89798 1.01931 1.01345 1.20093 0.97106 0.91493 1.11504 1.20552 0.90246 0.99060 1.01193 1.16789 0.90050 0.78003 1.24921 1.91273 1.81181 1.45761 1.96099 1.18924 0.80794 0.94503 1.02719 1.86445 1.18539 1.31642 1.89224 1.24206 0.98585 0.74587 0.71274 1.93114 1.93931 1.79373 1.52347 1.93028 1.94069 1.79690 1.53047 1.21701 0.96553 0.95013 1.12604 1.17748 0.91183 0.93569 0.88124 1.19904 1.02764 0.92747 1.34279 0.88743 1.26885 0.94438 1.05230 0.92022 1.69902 1.18445 1.33432 1.21051 0.85152 0.79423 0.75900 0.79323 1.17449 1.18994 1.19449 0.91973 0.91465 0.92278 0.84136 0.74941 0.84364 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 9.40 71.24 0.67 -2.26 15 2 C -0.20 -9.34 5.94 -19.40 -0.12 -9.46 15 3 C -0.09 -4.13 9.65 22.25 0.21 -3.92 15 4 C -0.08 -3.79 7.33 22.70 0.17 -3.63 15 5 F -0.16 -7.69 17.10 44.97 0.77 -6.92 15 6 C 0.07 3.74 6.49 22.49 0.15 3.89 15 7 O -0.34 -14.96 10.29 -92.85 -0.96 -15.91 15 8 C 0.40 14.33 5.98 113.37 0.68 15.00 15 9 F -0.21 -8.59 15.58 44.97 0.70 -7.88 15 10 F -0.22 -8.60 15.58 44.97 0.70 -7.90 15 11 C -0.24 -12.66 6.87 22.80 0.16 -12.50 15 12 C 0.10 5.07 5.56 -21.30 -0.12 4.95 15 13 C -0.47 -23.64 8.10 23.43 0.19 -23.45 15 14 H 0.09 4.45 6.89 -2.91 -0.02 4.43 15 15 C 0.03 1.52 5.16 85.24 0.44 1.96 15 16 N -0.80 -40.77 10.98 21.82 0.24 -40.53 15 17 Si 0.98 36.42 29.59 68.60 2.03 38.45 15 18 H -0.25 -8.94 7.11 99.48 0.71 -8.24 15 19 H -0.27 -9.44 7.11 99.48 0.71 -8.74 15 20 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.07 2.14 8.08 -2.39 -0.02 2.13 15 23 H 0.06 2.27 6.78 -2.38 -0.02 2.25 15 24 H 0.14 5.31 8.06 -2.91 -0.02 5.29 15 25 H 0.23 4.80 8.14 -2.39 -0.02 4.78 15 26 H 0.14 7.44 3.25 -2.91 -0.01 7.43 15 27 H 0.29 13.39 8.30 -92.71 -0.77 12.62 15 Total: -1.00 -62.36 248.54 7.14 -55.22 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.22 Total: 14.89 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 2.43 Total: -29.41 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.24 Total: -40.53 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.96 Total: -15.91 kcal Atomic # 9 Polarization: -24.88 SS G_CDS: 2.17 Total: -22.71 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -62.36 7.14 -55.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661340.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.852 kcal (2) G-P(sol) polarization free energy of solvation -62.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds