Wall clock time and date at job start Mon Mar 30 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36453 * 119.74708 * 2 1 4 4 C 1.40729 * 119.95270 * 179.72934 * 3 2 1 5 5 C 1.41100 * 120.25700 * 180.27979 * 4 3 2 6 6 H 1.08009 * 119.99780 * 204.87516 * 5 4 3 7 7 C 1.39901 * 120.00491 * 24.86712 * 5 4 3 8 8 N 1.30899 * 119.99571 * 17.63164 * 7 5 4 9 9 Si 1.86792 * 120.00330 * 197.63190 * 7 5 4 10 10 H 1.48500 * 109.47043 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47471 * 119.99767 * 9 7 5 12 12 H 1.48501 * 109.47280 * 240.00108 * 9 7 5 13 13 C 1.41403 * 119.48046 * 0.54385 * 4 3 2 14 14 O 1.35646 * 120.24405 * 179.75152 * 13 4 3 15 15 C 1.42901 * 116.99723 * 179.72141 * 14 13 4 16 16 F 1.39899 * 109.47152 * 60.00454 * 15 14 13 17 17 F 1.39898 * 109.47364 * 300.00258 * 15 14 13 18 18 C 1.38267 * 119.50637 * 359.47823 * 13 4 3 19 19 C 1.38644 * 120.02688 * 0.25709 * 18 13 4 20 20 F 1.35106 * 119.73331 * 179.97438 * 19 18 13 21 21 H 1.09002 * 109.46595 * 269.97773 * 1 2 3 22 22 H 1.08992 * 109.47183 * 29.97305 * 1 2 3 23 23 H 1.09000 * 109.47043 * 149.98321 * 1 2 3 24 24 H 1.08005 * 120.02240 * 0.02562 * 3 2 1 25 25 H 0.97000 * 120.00130 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47256 * 180.02562 * 15 14 13 27 27 H 1.07995 * 119.98815 * 180.27178 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1841 1.1847 0.0000 4 6 3.5913 1.1898 0.0058 5 6 4.2979 2.4111 0.0117 6 1 5.3045 2.4546 -0.3775 7 6 3.6947 3.5658 0.5217 8 7 2.6425 3.4679 1.2942 9 14 4.3907 5.2472 0.1002 10 1 5.5738 5.0860 -0.7827 11 1 3.3560 6.0501 -0.5997 12 1 4.7962 5.9422 1.3483 13 6 4.2916 -0.0386 -0.0002 14 8 5.6480 -0.0518 0.0002 15 6 6.2843 -1.3313 0.0002 16 9 5.9019 -2.0423 -1.1424 17 9 5.9012 -2.0428 1.1422 18 6 3.5836 -1.2262 -0.0006 19 6 2.1972 -1.2074 -0.0006 20 9 1.5113 -2.3714 -0.0015 21 1 -0.3632 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 1.6403 2.1179 0.0004 25 1 2.2245 4.2685 1.6481 26 1 7.3663 -1.1991 0.0009 27 1 4.1105 -2.1689 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:12 Heat of formation + Delta-G solvation = -200.043520 kcal Electronic energy + Delta-G solvation = -17966.256707 eV Core-core repulsion = 14466.086620 eV Total energy + Delta-G solvation = -3500.170087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.16251 -49.41817 -48.17300 -40.39433 -38.10722 -35.65700 -32.90847 -31.46887 -27.95475 -27.32264 -25.90276 -23.45532 -22.08113 -19.87205 -19.26558 -18.87016 -18.72697 -17.40808 -17.09439 -16.40813 -16.28053 -15.88659 -15.40492 -15.22986 -14.67767 -14.53663 -14.49203 -14.34196 -14.02181 -13.73516 -13.50574 -13.29757 -13.09763 -12.84470 -12.61159 -12.28731 -11.82711 -11.64866 -11.61683 -11.02631 -9.50301 -9.06567 -8.69092 -6.34017 0.63966 0.75806 1.42768 1.48340 1.58507 2.05787 2.21709 2.54976 2.69631 3.41046 3.65127 3.83782 3.86973 4.01042 4.23540 4.46518 4.66355 4.82668 5.00132 5.08581 5.19922 5.28929 5.49849 5.62060 5.85853 6.11610 6.19110 6.53977 6.75575 6.88217 8.25489 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.010245 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.787699 B = 2732.289669 C = 3944.925341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.076 3.924 5 C -0.466 4.466 6 H 0.083 0.917 7 C 0.036 3.964 8 N -0.813 5.813 9 Si 0.987 3.013 10 H -0.258 1.258 11 H -0.261 1.261 12 H -0.266 1.266 13 C -0.013 4.013 14 O -0.321 6.321 15 C 0.399 3.601 16 F -0.217 7.217 17 F -0.218 7.218 18 C -0.185 4.185 19 C -0.036 4.036 20 F -0.163 7.163 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.130 0.870 25 H 0.294 0.706 26 H 0.232 0.768 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -1.662 -1.778 4.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.163 4.163 4 C 0.072 3.928 5 C -0.494 4.494 6 H 0.101 0.899 7 C -0.180 4.180 8 N -0.438 5.438 9 Si 0.808 3.192 10 H -0.181 1.181 11 H -0.186 1.186 12 H -0.190 1.190 13 C -0.056 4.056 14 O -0.239 6.239 15 C 0.309 3.691 16 F -0.199 7.199 17 F -0.200 7.200 18 C -0.204 4.204 19 C -0.056 4.056 20 F -0.142 7.142 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.148 0.852 25 H 0.105 0.895 26 H 0.248 0.752 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.632 -1.453 -1.626 4.236 hybrid contribution -0.012 -0.177 0.065 0.189 sum 3.620 -1.630 -1.562 4.266 Atomic orbital electron populations 1.20587 0.89692 1.02637 1.02312 1.19675 0.97470 0.91574 1.02815 1.20679 0.92944 0.96499 1.06186 1.17480 0.92277 0.90734 0.92260 1.19689 1.01696 0.92662 1.35376 0.89867 1.26812 0.94446 1.05106 0.91680 1.69862 1.18687 1.33573 1.21654 0.85066 0.79435 0.75488 0.79243 1.18135 1.18556 1.19029 1.18725 0.80797 0.93788 1.12286 1.86441 1.18671 1.29291 1.89470 1.24260 0.99266 0.74791 0.70797 1.93025 1.93777 1.80107 1.52985 1.93025 1.93770 1.80099 1.53136 1.20932 0.93825 0.97127 1.08525 1.16934 0.88978 0.80767 1.18943 1.91275 1.79921 1.47353 1.95643 0.91231 0.90745 0.91590 0.85222 0.89476 0.75228 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.61 9.81 71.24 0.70 -2.91 15 2 C -0.11 -5.41 5.85 -20.08 -0.12 -5.52 15 3 C -0.14 -7.32 8.26 22.46 0.19 -7.14 15 4 C 0.08 4.02 5.58 -21.19 -0.12 3.90 15 5 C -0.47 -24.09 8.72 23.38 0.20 -23.88 15 6 H 0.08 4.21 7.65 -2.91 -0.02 4.19 15 7 C 0.04 1.71 5.14 85.23 0.44 2.15 15 8 N -0.81 -39.70 10.97 21.82 0.24 -39.46 15 9 Si 0.99 35.75 29.59 68.60 2.03 37.78 15 10 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 11 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 12 H -0.27 -9.23 7.11 99.48 0.71 -8.53 15 13 C -0.01 -0.63 6.52 23.06 0.15 -0.48 15 14 O -0.32 -13.90 9.72 -89.61 -0.87 -14.78 15 15 C 0.40 12.79 5.98 113.37 0.68 13.47 15 16 F -0.22 -7.54 15.59 44.97 0.70 -6.84 15 17 F -0.22 -7.78 15.59 44.97 0.70 -7.08 15 18 C -0.18 -8.95 8.23 22.37 0.18 -8.77 15 19 C -0.04 -1.76 7.25 22.57 0.16 -1.60 15 20 F -0.16 -7.46 16.44 44.97 0.74 -6.72 15 21 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.07 2.55 8.07 -2.39 -0.02 2.53 15 23 H 0.07 2.30 7.62 -2.39 -0.02 2.28 15 24 H 0.13 6.64 6.17 -2.91 -0.02 6.63 15 25 H 0.29 12.79 8.30 -92.71 -0.77 12.02 15 26 H 0.23 4.23 8.14 -2.39 -0.02 4.21 15 27 H 0.12 5.60 5.10 -2.91 -0.01 5.58 15 Total: -1.00 -60.55 249.74 7.23 -53.32 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.22 Total: 14.56 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 2.47 Total: -30.78 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.24 Total: -39.46 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.87 Total: -14.78 kcal Atomic # 9 Polarization: -22.78 SS G_CDS: 2.14 Total: -20.64 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -60.55 7.23 -53.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.720 kcal (2) G-P(sol) polarization free energy of solvation -60.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds