Wall clock time and date at job start Mon Mar 30 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38831 * 119.72335 * 2 1 4 4 C 1.36456 * 120.55708 * 180.02562 * 3 2 1 5 5 C 1.40766 * 119.97310 * 359.97438 * 4 3 2 6 6 C 1.41164 * 120.28219 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00485 * 205.36543 * 6 5 4 8 8 C 1.39935 * 119.99829 * 25.63359 * 6 5 4 9 9 N 1.30871 * 119.99706 * 16.60295 * 8 6 5 10 10 Si 1.86798 * 119.99949 * 196.59846 * 8 6 5 11 11 H 1.48497 * 109.47195 * 60.00462 * 10 8 6 12 12 H 1.48502 * 109.46783 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47108 * 300.00229 * 10 8 6 14 14 C 1.41246 * 119.44120 * 0.25710 * 5 4 3 15 15 O 1.35699 * 120.27379 * 179.74814 * 14 5 4 16 16 C 1.42901 * 117.00142 * 89.99351 * 15 14 5 17 17 F 1.39893 * 109.47482 * 300.00149 * 16 15 14 18 18 F 1.39895 * 109.46898 * 60.00478 * 16 15 14 19 19 C 1.38458 * 119.71181 * 180.02562 * 2 1 3 20 20 F 1.35099 * 119.99345 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.47079 * 89.99648 * 1 2 3 22 22 H 1.08997 * 109.47732 * 210.00557 * 1 2 3 23 23 H 1.09003 * 109.46884 * 330.00704 * 1 2 3 24 24 H 1.07999 * 119.72098 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.01509 * 179.97438 * 4 3 2 26 26 H 0.97003 * 119.99606 * 180.02562 * 9 8 6 27 27 H 1.09006 * 109.46673 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2056 0.0000 4 6 3.5597 1.2255 -0.0005 5 6 4.2807 0.0165 -0.0005 6 6 5.6922 0.0294 -0.0016 7 1 6.2397 -0.8109 -0.4023 8 6 6.3822 1.1286 0.5216 9 7 5.7615 1.9837 1.2938 10 14 8.1893 1.3753 0.1181 11 1 8.3539 1.5148 -1.3511 12 1 8.6835 2.6035 0.7908 13 1 8.9674 0.2035 0.5943 14 6 3.5797 -1.2098 -0.0055 15 8 4.2577 -2.3853 -0.0107 16 6 4.5824 -2.9526 1.2600 17 9 5.3844 -2.0594 1.9784 18 9 3.4054 -3.2008 1.9743 19 6 2.1932 -1.2025 -0.0005 20 9 1.5117 -2.3691 -0.0016 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6463 2.1357 0.0004 25 1 4.0863 2.1685 -0.0009 26 1 6.2397 2.7458 1.6562 27 1 5.1219 -3.8884 1.1129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661376.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:15 Heat of formation + Delta-G solvation = -204.034146 kcal Electronic energy + Delta-G solvation = -18366.038201 eV Core-core repulsion = 14865.695067 eV Total energy + Delta-G solvation = -3500.343134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.83711 -49.59383 -47.93063 -40.07403 -37.97682 -35.87946 -32.76846 -30.53540 -29.38649 -26.69994 -25.60166 -22.93343 -22.34324 -19.67385 -19.20044 -18.84201 -18.52616 -17.54324 -17.17740 -16.65433 -16.33293 -16.03454 -15.10409 -14.82825 -14.51604 -14.41094 -14.32409 -14.13551 -13.95927 -13.55493 -13.34985 -13.23292 -12.99831 -12.79307 -12.42486 -12.18142 -12.00040 -11.77383 -11.24687 -11.05628 -9.39322 -9.24141 -8.77854 -6.46428 0.52754 0.75202 1.38879 1.49083 1.52657 2.17260 2.38941 2.66034 2.92626 3.49445 3.65148 3.92460 4.02907 4.28339 4.43403 4.65634 4.86278 4.91627 4.96122 5.12078 5.16061 5.35959 5.56925 5.75077 5.91961 6.14904 6.19497 6.55154 6.72170 6.89075 8.17279 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.010876 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.837573 B = 2573.974612 C = 3451.197204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.248 4.248 3 C -0.071 4.071 4 C -0.178 4.178 5 C 0.100 3.900 6 C -0.448 4.448 7 H 0.080 0.920 8 C 0.039 3.961 9 N -0.802 5.802 10 Si 0.986 3.014 11 H -0.256 1.256 12 H -0.263 1.263 13 H -0.261 1.261 14 C -0.125 4.125 15 O -0.324 6.324 16 C 0.381 3.619 17 F -0.215 7.215 18 F -0.227 7.227 19 C 0.110 3.890 20 F -0.153 7.153 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.135 0.865 25 H 0.121 0.879 26 H 0.296 0.704 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -2.234 -0.613 2.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.250 4.250 3 C -0.089 4.089 4 C -0.197 4.197 5 C 0.096 3.904 6 C -0.475 4.475 7 H 0.098 0.902 8 C -0.179 4.179 9 N -0.426 5.426 10 Si 0.805 3.195 11 H -0.180 1.180 12 H -0.187 1.187 13 H -0.185 1.185 14 C -0.170 4.170 15 O -0.243 6.243 16 C 0.292 3.708 17 F -0.197 7.197 18 F -0.209 7.209 19 C 0.090 3.910 20 F -0.132 7.132 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.095 0.905 24 H 0.152 0.848 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.341 -2.148 -0.564 2.246 hybrid contribution 0.533 -0.082 0.409 0.677 sum 0.193 -2.229 -0.156 2.243 Atomic orbital electron populations 1.20380 0.89260 1.02218 1.01888 1.19549 0.97332 0.90807 1.17350 1.20570 0.93924 0.96590 0.97864 1.21127 0.93578 0.98038 1.06978 1.17944 0.94513 0.89932 0.88016 1.19676 0.91195 1.03211 1.33388 0.90217 1.26847 1.05927 0.93570 0.91591 1.69842 1.41060 1.11093 1.20564 0.85184 0.75288 0.78987 0.79996 1.17978 1.18657 1.18536 1.18562 0.87860 0.85739 1.24860 1.86521 1.74173 1.36342 1.27232 1.24480 0.77540 0.92055 0.76722 1.93063 1.73802 1.72921 1.79931 1.92985 1.52950 1.94550 1.80401 1.17878 0.88672 0.81226 1.03210 1.91319 1.80175 1.47521 1.94151 0.91521 0.93142 0.90453 0.84765 0.86086 0.89265 0.77260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 9.82 71.24 0.70 -2.06 15 2 C -0.25 -10.95 5.90 -19.67 -0.12 -11.07 15 3 C -0.07 -3.13 9.61 22.00 0.21 -2.92 15 4 C -0.18 -8.90 8.63 22.47 0.19 -8.71 15 5 C 0.10 5.30 5.45 -21.20 -0.12 5.19 15 6 C -0.45 -23.22 7.45 23.40 0.17 -23.04 15 7 H 0.08 4.10 7.65 -2.91 -0.02 4.08 15 8 C 0.04 1.86 5.16 85.25 0.44 2.29 15 9 N -0.80 -39.17 10.96 21.83 0.24 -38.93 15 10 Si 0.99 36.01 29.59 68.60 2.03 38.04 15 11 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 12 H -0.26 -8.93 7.11 99.48 0.71 -8.23 15 13 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 14 C -0.13 -6.48 5.37 23.11 0.12 -6.36 15 15 O -0.32 -15.37 9.53 -90.19 -0.86 -16.23 15 16 C 0.38 15.23 6.35 113.37 0.72 15.95 15 17 F -0.22 -9.88 15.83 44.97 0.71 -9.16 15 18 F -0.23 -9.67 16.62 44.97 0.75 -8.92 15 19 C 0.11 5.37 6.96 22.42 0.16 5.53 15 20 F -0.15 -7.17 15.94 44.97 0.72 -6.45 15 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.05 1.71 7.62 -2.39 -0.02 1.69 15 23 H 0.08 2.26 8.08 -2.39 -0.02 2.24 15 24 H 0.13 4.91 8.06 -2.91 -0.02 4.89 15 25 H 0.12 6.10 6.19 -2.91 -0.02 6.08 15 26 H 0.30 12.93 8.30 -92.71 -0.77 12.16 15 27 H 0.21 5.61 8.14 -2.38 -0.02 5.59 15 Total: -1.00 -60.71 252.68 7.28 -53.43 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.21 Total: 13.43 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 2.49 Total: -25.20 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.24 Total: -38.93 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.86 Total: -16.23 kcal Atomic # 9 Polarization: -26.71 SS G_CDS: 2.18 Total: -24.53 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -60.71 7.28 -53.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661376.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.605 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds