Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38037 * 120.13926 * 2 1 4 4 O 1.35930 * 119.89286 * 359.97438 * 3 2 1 5 5 C 1.42898 * 117.00074 * 179.72686 * 4 3 2 6 6 F 1.39899 * 109.47236 * 60.00138 * 5 4 3 7 7 F 1.39904 * 109.47122 * 300.00117 * 5 4 3 8 8 C 1.39189 * 120.21151 * 179.70630 * 3 2 1 9 9 C 1.38451 * 120.48211 * 0.25516 * 8 3 2 10 10 C 1.37943 * 120.27234 * 0.02562 * 9 8 3 11 11 F 1.35099 * 120.10878 * 180.02562 * 10 9 8 12 12 C 1.40641 * 120.13995 * 180.24887 * 2 1 3 13 13 C 1.41287 * 120.23469 * 0.02562 * 12 2 1 14 14 H 1.08000 * 119.99948 * 36.96717 * 13 12 2 15 15 C 1.39925 * 120.00124 * 216.96030 * 13 12 2 16 16 N 1.30852 * 119.99835 * 19.74071 * 15 13 12 17 17 Si 1.86799 * 120.00329 * 199.73218 * 15 13 12 18 18 H 1.48499 * 109.46835 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47213 * 120.00457 * 17 15 13 20 20 H 1.48495 * 109.47388 * 240.00196 * 17 15 13 21 21 H 1.08999 * 109.47097 * 89.99970 * 1 2 3 22 22 H 1.09004 * 109.47073 * 209.99965 * 1 2 3 23 23 H 1.08994 * 109.47279 * 329.99774 * 1 2 3 24 24 H 1.08999 * 109.47542 * 180.02562 * 5 4 3 25 25 H 1.07992 * 119.76056 * 180.27479 * 8 3 2 26 26 H 1.07999 * 119.86535 * 180.02562 * 9 8 3 27 27 H 0.97001 * 120.00501 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1938 0.0000 4 8 1.5210 2.3713 -0.0005 5 6 2.2999 3.5693 0.0056 6 9 3.1122 3.6033 -1.1330 7 9 3.1019 3.5983 1.1516 8 6 3.5919 1.1955 0.0062 9 6 4.2957 0.0033 0.0070 10 6 3.6233 -1.2012 0.0013 11 9 4.3134 -2.3626 0.0027 12 6 2.2131 -1.2163 -0.0053 13 6 1.5147 -2.4444 -0.0112 14 1 0.5984 -2.5418 -0.5744 15 6 2.0102 -3.5346 0.7126 16 7 2.8687 -3.3411 1.6811 17 14 1.4462 -5.2661 0.2967 18 1 0.4805 -5.2147 -0.8302 19 1 2.6193 -6.0884 -0.0943 20 1 0.7908 -5.8718 1.4836 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6365 4.4341 0.0049 25 1 4.1267 2.1337 0.0106 26 1 5.3756 0.0162 0.0123 27 1 3.2120 -4.0967 2.1831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661383.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = -177.842766 kcal Electronic energy + Delta-G solvation = -18048.902941 eV Core-core repulsion = 14549.695551 eV Total energy + Delta-G solvation = -3499.207390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.89385 -46.94860 -46.89941 -38.84859 -36.29246 -33.53658 -31.51103 -29.10816 -26.40035 -25.41538 -24.76608 -21.22454 -20.35837 -18.52173 -17.55884 -17.45600 -16.86369 -15.58891 -15.24721 -14.84610 -14.51270 -14.08956 -13.69354 -13.33467 -13.16804 -13.05672 -12.79017 -12.75365 -12.21032 -12.04976 -11.77638 -11.53659 -11.33737 -11.03013 -10.90504 -10.63643 -10.32540 -9.97779 -9.42026 -9.08362 -7.52168 -6.92758 -6.84638 -4.51205 2.57017 2.63787 3.07214 3.10905 3.13476 3.24522 3.89749 3.95079 4.48335 4.71483 5.03451 5.29758 5.85688 5.90223 6.09332 6.39958 6.53947 6.63640 6.64322 6.87727 7.06214 7.23484 7.38757 7.44773 7.68850 7.80272 8.13308 8.35154 8.69362 8.77069 10.14086 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.040109 B = 0.007405 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.928167 B = 3780.352728 C = 4181.110741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.179 4.179 3 C 0.109 3.891 4 O -0.325 6.325 5 C 0.411 3.589 6 F -0.205 7.205 7 F -0.204 7.204 8 C -0.273 4.273 9 C -0.111 4.111 10 C 0.025 3.975 11 F -0.142 7.142 12 C 0.110 3.890 13 C -0.460 4.460 14 H 0.089 0.911 15 C 0.079 3.921 16 N -0.773 5.773 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.274 1.274 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.167 0.833 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 7.524 -1.824 8.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.181 4.181 3 C 0.067 3.933 4 O -0.244 6.244 5 C 0.320 3.680 6 F -0.187 7.187 7 F -0.186 7.186 8 C -0.293 4.293 9 C -0.130 4.130 10 C 0.004 3.996 11 F -0.121 7.121 12 C 0.106 3.894 13 C -0.488 4.488 14 H 0.107 0.893 15 C -0.142 4.142 16 N -0.396 5.396 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.200 1.200 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.183 0.817 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.046 7.375 -1.625 7.825 hybrid contribution 0.517 -0.829 0.007 0.977 sum -1.529 6.547 -1.618 6.915 Atomic orbital electron populations 1.20256 0.91918 1.01153 1.00040 1.18990 0.95234 0.88800 1.15072 1.18421 0.90432 0.82913 1.01512 1.86505 1.35575 1.13012 1.89267 1.23118 0.81894 0.91160 0.71816 1.93061 1.76245 1.96765 1.52624 1.93069 1.76759 1.96780 1.52026 1.20458 0.91701 0.97794 1.19368 1.20352 0.98369 0.91401 1.02893 1.17796 0.90038 0.80291 1.11440 1.91324 1.79032 1.47588 1.94162 1.17203 0.89687 0.92352 0.90137 1.19356 1.09025 0.93821 1.26612 0.89329 1.25841 0.93647 1.01487 0.93253 1.69784 1.22513 1.34211 1.13084 0.86222 0.79524 0.81321 0.79520 1.18254 1.19603 1.19988 0.93725 0.91573 0.93594 0.81651 0.87135 0.87612 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.22 36.00 0.33 -1.27 15 2 C -0.18 -4.35 5.95 -103.79 -0.62 -4.97 15 3 C 0.11 2.49 6.44 -39.30 -0.25 2.24 15 4 O -0.33 -6.21 9.45 -19.52 -0.18 -6.40 15 5 C 0.41 6.09 5.98 101.05 0.60 6.69 15 6 F -0.21 -3.33 15.57 2.25 0.04 -3.30 15 7 F -0.20 -3.40 15.57 2.25 0.04 -3.36 15 8 C -0.27 -6.26 8.26 -39.15 -0.32 -6.59 15 9 C -0.11 -2.68 10.00 -39.61 -0.40 -3.07 15 10 C 0.02 0.66 6.69 -38.63 -0.26 0.40 15 11 F -0.14 -3.91 14.26 2.25 0.03 -3.87 15 12 C 0.11 2.92 5.40 -106.77 -0.58 2.34 15 13 C -0.46 -12.02 7.71 -37.79 -0.29 -12.31 15 14 H 0.09 2.19 7.41 -52.49 -0.39 1.80 15 15 C 0.08 2.00 4.51 -17.34 -0.08 1.92 15 16 N -0.77 -20.55 11.11 55.55 0.62 -19.94 15 17 Si 0.91 18.91 29.60 -169.99 -5.03 13.88 15 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 21 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.07 1.39 6.99 -51.93 -0.36 1.03 15 23 H 0.05 0.87 7.52 -51.93 -0.39 0.48 15 24 H 0.17 1.46 8.14 -51.93 -0.42 1.04 15 25 H 0.11 2.33 5.06 -52.49 -0.27 2.06 15 26 H 0.11 2.30 8.06 -52.49 -0.42 1.88 15 27 H 0.28 6.89 8.30 -40.82 -0.34 6.55 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -29.38 246.65 -4.45 -33.83 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -1.81 Total: 0.05 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.86 Total: -14.61 kcal Atomic # 7 Polarization: -20.55 SS G_CDS: 0.62 Total: -19.94 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.18 Total: -6.40 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.53 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.38 -4.45 -33.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661383.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.011 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds