Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38037 * 120.13926 * 2 1 4 4 O 1.35930 * 119.89286 * 359.97438 * 3 2 1 5 5 C 1.42898 * 117.00074 * 179.72686 * 4 3 2 6 6 F 1.39899 * 109.47236 * 60.00138 * 5 4 3 7 7 F 1.39904 * 109.47122 * 300.00117 * 5 4 3 8 8 C 1.39189 * 120.21151 * 179.70630 * 3 2 1 9 9 C 1.38451 * 120.48211 * 0.25516 * 8 3 2 10 10 C 1.37943 * 120.27234 * 0.02562 * 9 8 3 11 11 F 1.35099 * 120.10878 * 180.02562 * 10 9 8 12 12 C 1.40641 * 120.13995 * 180.24887 * 2 1 3 13 13 C 1.41287 * 120.23469 * 0.02562 * 12 2 1 14 14 H 1.08000 * 119.99948 * 36.96717 * 13 12 2 15 15 C 1.39925 * 120.00124 * 216.96030 * 13 12 2 16 16 N 1.30852 * 119.99835 * 19.74071 * 15 13 12 17 17 Si 1.86799 * 120.00329 * 199.73218 * 15 13 12 18 18 H 1.48499 * 109.46835 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47213 * 120.00457 * 17 15 13 20 20 H 1.48495 * 109.47388 * 240.00196 * 17 15 13 21 21 H 1.08999 * 109.47097 * 89.99970 * 1 2 3 22 22 H 1.09004 * 109.47073 * 209.99965 * 1 2 3 23 23 H 1.08994 * 109.47279 * 329.99774 * 1 2 3 24 24 H 1.08999 * 109.47542 * 180.02562 * 5 4 3 25 25 H 1.07992 * 119.76056 * 180.27479 * 8 3 2 26 26 H 1.07999 * 119.86535 * 180.02562 * 9 8 3 27 27 H 0.97001 * 120.00501 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1938 0.0000 4 8 1.5210 2.3713 -0.0005 5 6 2.2999 3.5693 0.0056 6 9 3.1122 3.6033 -1.1330 7 9 3.1019 3.5983 1.1516 8 6 3.5919 1.1955 0.0062 9 6 4.2957 0.0033 0.0070 10 6 3.6233 -1.2012 0.0013 11 9 4.3134 -2.3626 0.0027 12 6 2.2131 -1.2163 -0.0053 13 6 1.5147 -2.4444 -0.0112 14 1 0.5984 -2.5418 -0.5744 15 6 2.0102 -3.5346 0.7126 16 7 2.8687 -3.3411 1.6811 17 14 1.4462 -5.2661 0.2967 18 1 0.4805 -5.2147 -0.8302 19 1 2.6193 -6.0884 -0.0943 20 1 0.7908 -5.8718 1.4836 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6365 4.4341 0.0049 25 1 4.1267 2.1337 0.0106 26 1 5.3756 0.0162 0.0123 27 1 3.2120 -4.0967 2.1831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661383.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = -195.048235 kcal Electronic energy + Delta-G solvation = -18049.649027 eV Core-core repulsion = 14549.695551 eV Total energy + Delta-G solvation = -3499.953475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.14281 -48.97852 -48.15469 -40.52310 -38.00359 -35.40914 -33.32611 -30.92781 -28.08877 -27.05456 -26.40590 -22.97801 -22.15388 -20.17136 -18.94272 -18.72559 -18.60248 -17.50720 -16.99527 -16.56501 -16.19955 -15.84412 -15.28323 -14.78550 -14.75975 -14.51144 -14.48787 -14.31698 -13.94747 -13.67012 -13.43550 -13.27379 -13.01665 -12.71593 -12.64992 -12.27778 -12.04434 -11.78587 -11.25936 -10.95005 -9.41855 -8.78689 -8.72151 -6.47524 0.69654 0.76407 1.38303 1.45458 1.54157 1.92342 2.20588 2.62065 2.71342 3.33994 3.68257 3.86035 4.03114 4.09923 4.29829 4.67863 4.72973 4.92110 5.02535 5.12612 5.18277 5.48521 5.54080 5.58973 5.80009 5.97434 6.28130 6.45403 6.79790 6.83983 8.29417 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.040109 B = 0.007405 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.928167 B = 3780.352728 C = 4181.110741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.198 4.198 3 C 0.114 3.886 4 O -0.328 6.328 5 C 0.403 3.597 6 F -0.213 7.213 7 F -0.215 7.215 8 C -0.273 4.273 9 C -0.115 4.115 10 C -0.016 4.016 11 F -0.156 7.156 12 C 0.082 3.918 13 C -0.486 4.486 14 H 0.093 0.907 15 C 0.037 3.963 16 N -0.813 5.813 17 Si 0.980 3.020 18 H -0.250 1.250 19 H -0.273 1.273 20 H -0.263 1.263 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.237 0.763 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 8.633 -2.161 9.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.200 4.200 3 C 0.071 3.929 4 O -0.246 6.246 5 C 0.314 3.686 6 F -0.195 7.195 7 F -0.197 7.197 8 C -0.292 4.292 9 C -0.134 4.134 10 C -0.036 4.036 11 F -0.135 7.135 12 C 0.079 3.921 13 C -0.515 4.515 14 H 0.111 0.889 15 C -0.180 4.180 16 N -0.437 5.437 17 Si 0.801 3.199 18 H -0.173 1.173 19 H -0.198 1.198 20 H -0.187 1.187 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.253 0.747 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.068 8.515 -1.965 9.262 hybrid contribution 0.858 -0.949 0.109 1.284 sum -2.210 7.567 -1.856 8.098 Atomic orbital electron populations 1.20235 0.89748 1.01577 1.01090 1.19433 0.97089 0.88872 1.14587 1.18454 0.90410 0.84250 0.99800 1.86498 1.36344 1.12905 1.88842 1.24282 0.82480 0.91041 0.70819 1.93045 1.76719 1.96650 1.53125 1.93048 1.77292 1.96679 1.52711 1.20750 0.92155 0.98020 1.18299 1.20634 0.99502 0.91146 1.02146 1.18167 0.90645 0.80679 1.14119 1.91267 1.79261 1.48407 1.94555 1.17605 0.90093 0.93700 0.90708 1.19616 1.09680 0.94668 1.27491 0.88864 1.26724 0.93427 1.05337 0.92530 1.69844 1.24078 1.35548 1.14257 0.85174 0.79037 0.75957 0.79758 1.17334 1.19764 1.18728 0.92234 0.92438 0.91766 0.74722 0.85233 0.85846 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.82 9.22 71.23 0.66 -2.17 15 2 C -0.20 -9.54 5.95 -19.33 -0.11 -9.66 15 3 C 0.11 5.04 6.44 22.45 0.14 5.19 15 4 O -0.33 -11.56 9.45 -92.76 -0.88 -12.44 15 5 C 0.40 10.41 5.98 113.37 0.68 11.09 15 6 F -0.21 -6.28 15.57 44.97 0.70 -5.58 15 7 F -0.22 -6.52 15.57 44.97 0.70 -5.82 15 8 C -0.27 -12.18 8.26 22.55 0.19 -12.00 15 9 C -0.12 -5.58 10.00 22.25 0.22 -5.36 15 10 C -0.02 -0.86 6.69 22.89 0.15 -0.71 15 11 F -0.16 -8.85 14.26 44.97 0.64 -8.20 15 12 C 0.08 4.45 5.40 -21.26 -0.11 4.34 15 13 C -0.49 -25.83 7.71 23.43 0.18 -25.65 15 14 H 0.09 4.67 7.41 -2.91 -0.02 4.64 15 15 C 0.04 1.89 4.51 85.25 0.38 2.28 15 16 N -0.81 -44.24 11.11 21.82 0.24 -44.00 15 17 Si 0.98 38.94 29.60 68.60 2.03 40.97 15 18 H -0.25 -9.46 7.11 99.48 0.71 -8.76 15 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 21 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.06 2.39 6.99 -2.39 -0.02 2.37 15 23 H 0.06 2.31 7.52 -2.39 -0.02 2.29 15 24 H 0.24 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.13 5.20 5.06 -2.91 -0.01 5.19 15 26 H 0.12 5.35 8.06 -2.91 -0.02 5.33 15 27 H 0.29 14.35 8.30 -92.71 -0.77 13.58 15 Total: -1.00 -64.37 246.65 7.03 -57.33 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.22 Total: 10.38 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 2.38 Total: -32.64 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.24 Total: -44.00 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.88 Total: -12.44 kcal Atomic # 9 Polarization: -21.65 SS G_CDS: 2.04 Total: -19.61 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -64.37 7.03 -57.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661383.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.716 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds