Wall clock time and date at job start Mon Mar 30 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40722 * 120.14057 * 2 1 4 4 C 1.41315 * 120.18686 * 359.95270 * 3 2 1 5 5 H 1.07995 * 119.99964 * 329.68416 * 4 3 2 6 6 C 1.39904 * 120.00047 * 149.69430 * 4 3 2 7 7 N 1.30858 * 120.00541 * 162.15910 * 6 4 3 8 8 Si 1.86809 * 119.99749 * 342.15261 * 6 4 3 9 9 H 1.48495 * 109.46981 * 95.39577 * 8 6 4 10 10 H 1.48502 * 109.47006 * 215.39281 * 8 6 4 11 11 H 1.48498 * 109.46918 * 335.39489 * 8 6 4 12 12 C 1.40773 * 119.62238 * 179.97438 * 3 2 1 13 13 C 1.37597 * 119.87161 * 359.97438 * 12 3 2 14 14 C 1.38781 * 120.27676 * 0.02562 * 13 12 3 15 15 F 1.35102 * 119.80415 * 179.97438 * 14 13 12 16 16 C 1.37929 * 120.13631 * 180.27248 * 2 1 3 17 17 O 1.35944 * 119.94218 * 0.02562 * 16 2 1 18 18 C 1.42899 * 117.00005 * 270.27712 * 17 16 2 19 19 F 1.39898 * 109.47211 * 300.00125 * 18 17 16 20 20 F 1.39902 * 109.47173 * 60.00047 * 18 17 16 21 21 H 1.08999 * 109.47196 * 90.00359 * 1 2 3 22 22 H 1.09001 * 109.47313 * 210.00546 * 1 2 3 23 23 H 1.09002 * 109.46833 * 330.00307 * 1 2 3 24 24 H 0.96999 * 120.00266 * 180.02562 * 7 6 4 25 25 H 1.08001 * 120.06297 * 179.97438 * 12 3 2 26 26 H 1.08002 * 119.85546 * 179.97438 * 13 12 3 27 27 H 1.08996 * 109.47134 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2170 0.0000 4 6 1.5140 2.4448 -0.0010 5 1 0.5455 2.5141 -0.4738 6 6 2.0761 3.5707 0.6103 7 7 1.6246 4.7650 0.3236 8 14 3.4712 3.3691 1.8362 9 1 4.7710 3.5471 1.1405 10 1 3.3397 4.3887 2.9078 11 1 3.4119 2.0113 2.4347 12 6 3.6212 1.2042 0.0005 13 6 4.2957 0.0049 0.0016 14 6 3.5941 -1.1925 0.0016 15 9 4.2660 -2.3645 0.0021 16 6 2.1994 -1.1928 -0.0057 17 8 1.5213 -2.3711 -0.0118 18 6 1.1919 -2.9366 1.2585 19 9 2.3661 -3.1824 1.9782 20 9 0.3861 -2.0428 1.9720 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 2.0146 5.5456 0.7472 25 1 4.1707 2.1340 0.0001 26 1 5.3757 -0.0045 0.0016 27 1 0.6532 -3.8725 1.1108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661404.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:48 Heat of formation + Delta-G solvation = -184.302158 kcal Electronic energy + Delta-G solvation = -18289.452505 eV Core-core repulsion = 14789.965015 eV Total energy + Delta-G solvation = -3499.487490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.71683 -47.70137 -46.83412 -38.87515 -36.74168 -33.59065 -31.63688 -29.88929 -26.79875 -25.21370 -24.66026 -21.52864 -20.38803 -18.71998 -17.80542 -17.38395 -17.02970 -16.18022 -15.59462 -15.20202 -14.73970 -14.39649 -13.71943 -13.38783 -13.27173 -13.11513 -13.00282 -12.75313 -12.38045 -12.24229 -11.96351 -11.87321 -11.33279 -11.13022 -10.96110 -10.42800 -10.26940 -10.05004 -9.62308 -9.34905 -7.82199 -7.61985 -7.13717 -4.65810 1.92304 2.25141 2.98289 3.09770 3.19757 3.49373 3.83656 3.98503 4.23460 4.84221 5.06864 5.11554 5.34962 5.73062 6.00836 6.21871 6.34680 6.48337 6.51093 6.55342 6.83311 7.07723 7.10153 7.27440 7.32850 7.59228 7.96714 8.14075 8.37942 8.56620 9.86835 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.009471 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.237549 B = 2955.808882 C = 3359.266508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.146 4.146 3 C 0.087 3.913 4 C -0.429 4.429 5 H 0.099 0.901 6 C 0.084 3.916 7 N -0.795 5.795 8 Si 0.906 3.094 9 H -0.267 1.267 10 H -0.286 1.286 11 H -0.242 1.242 12 C -0.212 4.212 13 C -0.100 4.100 14 C -0.040 4.040 15 F -0.158 7.158 16 C 0.068 3.932 17 O -0.329 6.329 18 C 0.402 3.598 19 F -0.206 7.206 20 F -0.202 7.202 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.289 0.711 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 -8.226 2.181 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.148 4.148 3 C 0.084 3.916 4 C -0.456 4.456 5 H 0.117 0.883 6 C -0.137 4.137 7 N -0.418 5.418 8 Si 0.732 3.268 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.165 1.165 12 C -0.231 4.231 13 C -0.119 4.119 14 C -0.061 4.061 15 F -0.137 7.137 16 C 0.025 3.975 17 O -0.248 6.248 18 C 0.312 3.688 19 F -0.187 7.187 20 F -0.184 7.184 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.486 -8.042 2.072 8.319 hybrid contribution 0.894 0.047 0.749 1.168 sum 0.408 -7.995 2.822 8.489 Atomic orbital electron populations 1.20586 0.91413 1.02383 1.00924 1.19913 0.95913 0.90696 1.08273 1.17502 0.91095 0.92416 0.90585 1.19480 1.05472 0.90749 1.29932 0.88265 1.26192 0.96899 0.94198 0.96372 1.69682 1.37999 0.99306 1.34793 0.86371 0.80246 0.80209 0.80004 1.19262 1.21312 1.16539 1.20971 0.94503 0.96068 1.11554 1.20509 0.98731 0.91163 1.01534 1.17382 0.88395 0.81126 1.19159 1.91324 1.80425 1.46465 1.95486 1.18168 0.88116 0.83782 1.07408 1.86590 1.74190 1.37458 1.26612 1.23441 0.78019 0.90566 0.76738 1.93073 1.51636 1.94492 1.79546 1.93034 1.73412 1.72073 1.79851 0.92871 0.92431 0.91083 0.90042 0.86844 0.86821 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.01 36.00 0.32 -1.63 15 2 C -0.15 -3.37 5.79 -103.80 -0.60 -3.97 15 3 C 0.09 2.14 5.09 -106.83 -0.54 1.59 15 4 C -0.43 -10.86 8.52 -37.79 -0.32 -11.18 15 5 H 0.10 2.59 7.23 -52.49 -0.38 2.21 15 6 C 0.08 2.08 5.41 -17.34 -0.09 1.98 15 7 N -0.79 -19.92 13.93 55.55 0.77 -19.15 15 8 Si 0.91 19.74 24.52 -169.99 -4.17 15.57 15 9 H -0.27 -5.58 6.71 56.52 0.38 -5.20 15 10 H -0.29 -6.01 7.11 56.52 0.40 -5.61 15 11 H -0.24 -5.51 6.86 56.52 0.39 -5.12 15 12 C -0.21 -4.94 7.15 -38.86 -0.28 -5.22 15 13 C -0.10 -2.22 9.99 -39.61 -0.40 -2.61 15 14 C -0.04 -0.92 7.05 -38.92 -0.27 -1.19 15 15 F -0.16 -3.50 16.75 2.25 0.04 -3.46 15 16 C 0.07 1.53 5.32 -39.24 -0.21 1.33 15 17 O -0.33 -6.45 9.45 -19.56 -0.18 -6.64 15 18 C 0.40 6.42 6.30 101.05 0.64 7.06 15 19 F -0.21 -3.72 16.63 2.25 0.04 -3.68 15 20 F -0.20 -3.51 14.50 2.25 0.03 -3.47 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.06 1.06 5.02 -51.93 -0.26 0.80 15 23 H 0.07 1.46 6.86 -51.93 -0.36 1.10 15 24 H 0.29 6.54 8.30 -40.82 -0.34 6.21 15 25 H 0.11 2.56 4.76 -52.49 -0.25 2.31 15 26 H 0.11 2.19 8.06 -52.49 -0.42 1.76 15 27 H 0.16 1.64 8.14 -51.93 -0.42 1.22 15 LS Contribution 242.58 15.07 3.66 3.66 Total: -1.00 -27.49 242.58 -3.26 -30.75 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -1.68 Total: 0.28 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.76 Total: -13.85 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.77 Total: -19.15 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.18 Total: -6.64 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 0.11 Total: -10.62 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.17 Total: 15.57 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.49 -3.26 -30.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661404.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.551 kcal (2) G-P(sol) polarization free energy of solvation -27.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds