Wall clock time and date at job start Mon Mar 30 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40722 * 120.14057 * 2 1 4 4 C 1.41315 * 120.18686 * 359.95270 * 3 2 1 5 5 H 1.07995 * 119.99964 * 329.68416 * 4 3 2 6 6 C 1.39904 * 120.00047 * 149.69430 * 4 3 2 7 7 N 1.30858 * 120.00541 * 162.15910 * 6 4 3 8 8 Si 1.86809 * 119.99749 * 342.15261 * 6 4 3 9 9 H 1.48495 * 109.46981 * 95.39577 * 8 6 4 10 10 H 1.48502 * 109.47006 * 215.39281 * 8 6 4 11 11 H 1.48498 * 109.46918 * 335.39489 * 8 6 4 12 12 C 1.40773 * 119.62238 * 179.97438 * 3 2 1 13 13 C 1.37597 * 119.87161 * 359.97438 * 12 3 2 14 14 C 1.38781 * 120.27676 * 0.02562 * 13 12 3 15 15 F 1.35102 * 119.80415 * 179.97438 * 14 13 12 16 16 C 1.37929 * 120.13631 * 180.27248 * 2 1 3 17 17 O 1.35944 * 119.94218 * 0.02562 * 16 2 1 18 18 C 1.42899 * 117.00005 * 270.27712 * 17 16 2 19 19 F 1.39898 * 109.47211 * 300.00125 * 18 17 16 20 20 F 1.39902 * 109.47173 * 60.00047 * 18 17 16 21 21 H 1.08999 * 109.47196 * 90.00359 * 1 2 3 22 22 H 1.09001 * 109.47313 * 210.00546 * 1 2 3 23 23 H 1.09002 * 109.46833 * 330.00307 * 1 2 3 24 24 H 0.96999 * 120.00266 * 180.02562 * 7 6 4 25 25 H 1.08001 * 120.06297 * 179.97438 * 12 3 2 26 26 H 1.08002 * 119.85546 * 179.97438 * 13 12 3 27 27 H 1.08996 * 109.47134 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2170 0.0000 4 6 1.5140 2.4448 -0.0010 5 1 0.5455 2.5141 -0.4738 6 6 2.0761 3.5707 0.6103 7 7 1.6246 4.7650 0.3236 8 14 3.4712 3.3691 1.8362 9 1 4.7710 3.5471 1.1405 10 1 3.3397 4.3887 2.9078 11 1 3.4119 2.0113 2.4347 12 6 3.6212 1.2042 0.0005 13 6 4.2957 0.0049 0.0016 14 6 3.5941 -1.1925 0.0016 15 9 4.2660 -2.3645 0.0021 16 6 2.1994 -1.1928 -0.0057 17 8 1.5213 -2.3711 -0.0118 18 6 1.1919 -2.9366 1.2585 19 9 2.3661 -3.1824 1.9782 20 9 0.3861 -2.0428 1.9720 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 2.0146 5.5456 0.7472 25 1 4.1707 2.1340 0.0001 26 1 5.3757 -0.0045 0.0016 27 1 0.6532 -3.8725 1.1108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661404.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:47 Heat of formation + Delta-G solvation = -200.618840 kcal Electronic energy + Delta-G solvation = -18290.160050 eV Core-core repulsion = 14789.965015 eV Total energy + Delta-G solvation = -3500.195035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.06015 -49.46473 -48.18472 -40.55007 -38.39737 -35.42554 -33.36534 -31.66456 -28.45407 -26.66391 -26.44044 -23.24676 -22.14543 -20.34244 -19.14997 -18.88440 -18.63614 -17.85988 -17.34966 -16.95927 -16.39184 -16.08308 -15.21044 -15.05409 -14.82554 -14.66764 -14.60647 -14.36360 -14.02634 -13.94620 -13.62008 -13.33044 -12.90286 -12.85285 -12.66776 -12.21258 -12.00010 -11.78732 -11.37396 -11.13307 -9.54916 -9.44548 -8.98424 -6.56389 0.20694 0.46106 1.24536 1.37216 1.45831 1.99443 2.10173 2.46470 2.71171 3.23893 3.55643 3.74845 3.78599 4.03978 4.27666 4.53757 4.63861 4.74618 4.84081 4.91999 5.12337 5.32041 5.39212 5.52181 5.56271 5.78576 6.13815 6.29438 6.55497 6.68994 8.07512 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.009471 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.237549 B = 2955.808882 C = 3359.266508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.163 4.163 3 C 0.073 3.927 4 C -0.454 4.454 5 H 0.076 0.924 6 C 0.055 3.945 7 N -0.828 5.828 8 Si 0.951 3.049 9 H -0.250 1.250 10 H -0.273 1.273 11 H -0.258 1.258 12 C -0.222 4.222 13 C -0.100 4.100 14 C -0.048 4.048 15 F -0.154 7.154 16 C 0.067 3.933 17 O -0.336 6.336 18 C 0.395 3.605 19 F -0.218 7.218 20 F -0.211 7.211 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.298 0.702 25 H 0.120 0.880 26 H 0.144 0.856 27 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -9.668 2.699 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C 0.070 3.930 4 C -0.482 4.482 5 H 0.094 0.906 6 C -0.163 4.163 7 N -0.452 5.452 8 Si 0.774 3.226 9 H -0.175 1.175 10 H -0.200 1.200 11 H -0.182 1.182 12 C -0.241 4.241 13 C -0.119 4.119 14 C -0.069 4.069 15 F -0.133 7.133 16 C 0.024 3.976 17 O -0.256 6.256 18 C 0.307 3.693 19 F -0.200 7.200 20 F -0.193 7.193 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.137 0.863 26 H 0.162 0.838 27 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.206 -9.484 2.586 9.832 hybrid contribution 0.647 0.316 0.564 0.914 sum 0.853 -9.168 3.149 9.731 Atomic orbital electron populations 1.20564 0.89947 1.02648 1.01541 1.20218 0.97280 0.90660 1.08335 1.17695 0.91906 0.92597 0.90769 1.19442 1.05158 0.91973 1.31671 0.90584 1.26741 0.98564 0.93755 0.97193 1.69691 1.39485 0.99983 1.36076 0.85686 0.78858 0.79414 0.78608 1.17491 1.19950 1.18215 1.21101 0.94185 0.96928 1.11876 1.20805 1.00348 0.90388 1.00354 1.17653 0.88843 0.81561 1.18821 1.91333 1.80321 1.46198 1.95449 1.18231 0.88323 0.84708 1.06320 1.86549 1.73820 1.36133 1.29066 1.24503 0.77784 0.92042 0.74991 1.93048 1.52742 1.94480 1.79773 1.93014 1.73491 1.72835 1.79974 0.92044 0.90644 0.92224 0.89066 0.86282 0.83832 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.62 9.01 71.23 0.64 -2.98 15 2 C -0.16 -7.44 5.79 -19.33 -0.11 -7.55 15 3 C 0.07 3.59 5.09 -21.30 -0.11 3.48 15 4 C -0.45 -23.53 8.52 23.43 0.20 -23.33 15 5 H 0.08 4.16 7.23 -2.91 -0.02 4.14 15 6 C 0.06 2.74 5.41 85.24 0.46 3.20 15 7 N -0.83 -42.00 13.93 21.82 0.30 -41.70 15 8 Si 0.95 39.93 24.52 68.60 1.68 41.62 15 9 H -0.25 -9.75 6.71 99.48 0.67 -9.08 15 10 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 11 H -0.26 -11.42 6.86 99.48 0.68 -10.74 15 12 C -0.22 -10.11 7.15 22.74 0.16 -9.95 15 13 C -0.10 -4.23 9.99 22.25 0.22 -4.00 15 14 C -0.05 -2.12 7.05 22.70 0.16 -1.96 15 15 F -0.15 -6.45 16.75 44.97 0.75 -5.70 15 16 C 0.07 2.93 5.32 22.49 0.12 3.05 15 17 O -0.34 -12.31 9.45 -92.92 -0.88 -13.19 15 18 C 0.40 11.32 6.30 113.37 0.71 12.04 15 19 F -0.22 -7.32 16.63 44.97 0.75 -6.58 15 20 F -0.21 -6.82 14.50 44.97 0.65 -6.17 15 21 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.07 2.68 5.02 -2.39 -0.01 2.67 15 23 H 0.06 2.49 6.86 -2.39 -0.02 2.47 15 24 H 0.30 13.55 8.30 -92.71 -0.77 12.79 15 25 H 0.12 5.22 4.76 -2.91 -0.01 5.21 15 26 H 0.14 5.09 8.06 -2.91 -0.02 5.06 15 27 H 0.23 3.44 8.14 -2.39 -0.02 3.43 15 Total: -1.00 -58.46 242.58 6.88 -51.58 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.16 Total: 8.14 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 2.46 Total: -28.01 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.30 Total: -41.70 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.88 Total: -13.19 kcal Atomic # 9 Polarization: -20.60 SS G_CDS: 2.15 Total: -18.45 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.68 Total: 41.62 kcal Total: -58.46 6.88 -51.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661404.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.039 kcal (2) G-P(sol) polarization free energy of solvation -58.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds