Wall clock time and date at job start Mon Mar 30 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38674 * 119.75854 * 2 1 4 4 C 1.36533 * 120.49723 * 179.97438 * 3 2 1 5 5 C 1.40784 * 119.99935 * 0.27630 * 4 3 2 6 6 C 1.41309 * 120.23767 * 179.72362 * 5 4 3 7 7 H 1.08004 * 120.00212 * 150.12593 * 6 5 4 8 8 C 1.39923 * 120.00303 * 330.11614 * 6 5 4 9 9 N 1.30855 * 119.99712 * 161.77777 * 8 6 5 10 10 Si 1.86796 * 120.00130 * 341.78838 * 8 6 5 11 11 H 1.48499 * 109.47660 * 95.40201 * 10 8 6 12 12 H 1.48498 * 109.47321 * 215.40613 * 10 8 6 13 13 H 1.48505 * 109.47094 * 335.40142 * 10 8 6 14 14 C 1.40855 * 119.51976 * 359.51303 * 5 4 3 15 15 F 1.35105 * 120.24474 * 180.22650 * 14 5 4 16 16 C 1.38491 * 119.50721 * 0.46493 * 14 5 4 17 17 O 1.35970 * 120.00591 * 179.74445 * 16 14 5 18 18 C 1.42898 * 117.00044 * 270.02116 * 17 16 14 19 19 F 1.39897 * 109.47287 * 299.99613 * 18 17 16 20 20 F 1.39898 * 109.47231 * 59.99675 * 18 17 16 21 21 H 1.09003 * 109.46379 * 90.00279 * 1 2 3 22 22 H 1.08996 * 109.47168 * 210.00356 * 1 2 3 23 23 H 1.09000 * 109.47263 * 330.00452 * 1 2 3 24 24 H 1.08003 * 119.74866 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.99930 * 179.97438 * 4 3 2 26 26 H 0.97005 * 119.99647 * 180.02562 * 9 8 6 27 27 H 1.09003 * 109.47122 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.2039 0.0000 4 6 3.5606 1.2215 0.0005 5 6 4.2801 0.0114 -0.0048 6 6 5.6932 0.0238 -0.0102 7 1 6.2421 -0.7835 0.4519 8 6 6.3813 1.0818 -0.6143 9 7 7.6400 1.2932 -0.3255 10 14 5.5033 2.1924 -1.8328 11 1 5.0005 3.3996 -1.1292 12 1 6.4498 2.6008 -2.9016 13 1 4.3613 1.4598 -2.4365 14 6 3.5814 -1.2116 -0.0002 15 9 4.2572 -2.3815 -0.0006 16 6 2.1965 -1.2059 -0.0004 17 8 1.5118 -2.3806 -0.0012 18 6 1.1855 -2.9405 -1.2749 19 9 0.3882 -2.0402 -1.9896 20 9 2.3620 -3.1906 -1.9895 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6473 2.1345 -0.0004 25 1 4.0885 2.1637 0.0001 26 1 8.1170 2.0269 -0.7440 27 1 0.6417 -3.8744 -1.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661663.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:50 Heat of formation + Delta-G solvation = -185.464164 kcal Electronic energy + Delta-G solvation = -18289.538120 eV Core-core repulsion = 14790.000242 eV Total energy + Delta-G solvation = -3499.537879 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.67276 -47.46659 -46.78993 -38.83801 -36.71145 -33.89091 -31.66309 -29.14233 -27.94589 -25.48392 -23.71467 -21.62474 -20.65306 -18.68954 -17.79428 -17.35485 -16.85593 -16.12314 -15.73798 -15.07587 -14.58120 -14.21603 -13.70259 -13.56811 -13.25330 -13.12829 -12.94795 -12.69922 -12.55279 -12.03371 -11.97748 -11.85197 -11.56802 -11.19871 -11.07470 -10.64596 -10.20136 -9.92669 -9.82737 -9.30922 -7.77767 -7.64782 -7.14138 -4.65025 1.93257 2.27795 2.97823 3.09758 3.19582 3.50577 3.83593 3.99749 4.26306 4.85052 5.09452 5.10013 5.37743 5.71637 5.91360 6.09734 6.22201 6.29093 6.36356 6.49612 6.64690 6.99394 7.15730 7.29210 7.42072 7.52705 7.92878 8.15658 8.37305 8.53886 9.86886 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.009502 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.075857 B = 2946.048629 C = 3331.270137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.197 4.197 3 C -0.072 4.072 4 C -0.212 4.212 5 C 0.066 3.934 6 C -0.428 4.428 7 H 0.098 0.902 8 C 0.084 3.916 9 N -0.792 5.792 10 Si 0.910 3.090 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.242 1.242 14 C -0.001 4.001 15 F -0.144 7.144 16 C 0.069 3.931 17 O -0.330 6.330 18 C 0.403 3.597 19 F -0.207 7.207 20 F -0.202 7.202 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.290 0.710 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -2.317 -2.196 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.199 4.199 3 C -0.090 4.090 4 C -0.232 4.232 5 C 0.062 3.938 6 C -0.456 4.456 7 H 0.116 0.884 8 C -0.137 4.137 9 N -0.414 5.414 10 Si 0.735 3.265 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.165 1.165 14 C -0.022 4.022 15 F -0.122 7.122 16 C 0.026 3.974 17 O -0.250 6.250 18 C 0.313 3.687 19 F -0.189 7.189 20 F -0.184 7.184 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.047 -2.348 -2.084 10.526 hybrid contribution 0.109 0.430 -0.749 0.870 sum -9.938 -1.919 -2.833 10.511 Atomic orbital electron populations 1.20413 0.91923 1.01127 1.00845 1.19176 0.95191 0.91200 1.14311 1.20175 0.93932 0.95836 0.99070 1.20705 0.93704 0.96955 1.11806 1.17610 0.94192 0.89419 0.92586 1.19439 0.89497 1.06507 1.30126 0.88406 1.26187 0.94912 0.96275 0.96291 1.69684 1.10504 1.26652 1.34603 0.86312 0.80218 0.80051 0.79878 1.19113 1.21221 1.16502 1.17973 0.87667 0.81912 1.14656 1.91335 1.80475 1.45830 1.94597 1.18131 0.88029 0.83832 1.07373 1.86563 1.73942 1.37855 1.26625 1.23431 0.78206 0.90345 0.76699 1.93044 1.74069 1.71903 1.79893 1.93098 1.51307 1.94366 1.79658 0.92711 0.92700 0.92884 0.87428 0.86973 0.89948 0.81987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 8.79 36.01 0.32 -1.12 15 2 C -0.20 -4.10 5.76 -104.21 -0.60 -4.70 15 3 C -0.07 -1.50 9.61 -40.04 -0.38 -1.88 15 4 C -0.21 -4.96 7.12 -39.24 -0.28 -5.24 15 5 C 0.07 1.70 5.11 -106.78 -0.55 1.15 15 6 C -0.43 -11.66 9.26 -37.78 -0.35 -12.01 15 7 H 0.10 2.84 7.97 -52.48 -0.42 2.42 15 8 C 0.08 2.17 5.40 -17.34 -0.09 2.08 15 9 N -0.79 -20.54 13.93 55.55 0.77 -19.76 15 10 Si 0.91 20.09 24.52 -169.99 -4.17 15.92 15 11 H -0.27 -5.52 6.71 56.52 0.38 -5.14 15 12 H -0.29 -6.04 7.11 56.52 0.40 -5.64 15 13 H -0.24 -5.55 6.86 56.52 0.39 -5.16 15 14 C 0.00 -0.03 7.03 -38.50 -0.27 -0.31 15 15 F -0.14 -3.67 16.28 2.25 0.04 -3.64 15 16 C 0.07 1.56 5.31 -39.24 -0.21 1.35 15 17 O -0.33 -6.48 9.25 -19.64 -0.18 -6.66 15 18 C 0.40 6.46 6.35 101.05 0.64 7.11 15 19 F -0.21 -3.45 15.17 2.25 0.03 -3.42 15 20 F -0.20 -3.84 16.64 2.25 0.04 -3.80 15 21 H 0.05 0.88 7.28 -51.93 -0.38 0.50 15 22 H 0.05 0.88 7.51 -51.93 -0.39 0.49 15 23 H 0.05 0.77 8.08 -51.93 -0.42 0.35 15 24 H 0.11 1.89 8.06 -52.48 -0.42 1.47 15 25 H 0.11 2.53 4.73 -52.48 -0.25 2.28 15 26 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 27 H 0.16 1.65 8.14 -51.93 -0.42 1.23 15 LS Contribution 246.29 15.07 3.71 3.71 Total: -1.00 -28.64 246.29 -3.40 -32.04 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -1.87 Total: -0.82 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.77 Total: -13.57 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.77 Total: -19.76 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.18 Total: -6.66 kcal Atomic # 9 Polarization: -10.97 SS G_CDS: 0.11 Total: -10.86 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.92 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.64 -3.40 -32.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661663.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.423 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds