Wall clock time and date at job start Mon Mar 30 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38674 * 119.75854 * 2 1 4 4 C 1.36533 * 120.49723 * 179.97438 * 3 2 1 5 5 C 1.40784 * 119.99935 * 0.27630 * 4 3 2 6 6 C 1.41309 * 120.23767 * 179.72362 * 5 4 3 7 7 H 1.08004 * 120.00212 * 150.12593 * 6 5 4 8 8 C 1.39923 * 120.00303 * 330.11614 * 6 5 4 9 9 N 1.30855 * 119.99712 * 161.77777 * 8 6 5 10 10 Si 1.86796 * 120.00130 * 341.78838 * 8 6 5 11 11 H 1.48499 * 109.47660 * 95.40201 * 10 8 6 12 12 H 1.48498 * 109.47321 * 215.40613 * 10 8 6 13 13 H 1.48505 * 109.47094 * 335.40142 * 10 8 6 14 14 C 1.40855 * 119.51976 * 359.51303 * 5 4 3 15 15 F 1.35105 * 120.24474 * 180.22650 * 14 5 4 16 16 C 1.38491 * 119.50721 * 0.46493 * 14 5 4 17 17 O 1.35970 * 120.00591 * 179.74445 * 16 14 5 18 18 C 1.42898 * 117.00044 * 270.02116 * 17 16 14 19 19 F 1.39897 * 109.47287 * 299.99613 * 18 17 16 20 20 F 1.39898 * 109.47231 * 59.99675 * 18 17 16 21 21 H 1.09003 * 109.46379 * 90.00279 * 1 2 3 22 22 H 1.08996 * 109.47168 * 210.00356 * 1 2 3 23 23 H 1.09000 * 109.47263 * 330.00452 * 1 2 3 24 24 H 1.08003 * 119.74866 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.99930 * 179.97438 * 4 3 2 26 26 H 0.97005 * 119.99647 * 180.02562 * 9 8 6 27 27 H 1.09003 * 109.47122 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.2039 0.0000 4 6 3.5606 1.2215 0.0005 5 6 4.2801 0.0114 -0.0048 6 6 5.6932 0.0238 -0.0102 7 1 6.2421 -0.7835 0.4519 8 6 6.3813 1.0818 -0.6143 9 7 7.6400 1.2932 -0.3255 10 14 5.5033 2.1924 -1.8328 11 1 5.0005 3.3996 -1.1292 12 1 6.4498 2.6008 -2.9016 13 1 4.3613 1.4598 -2.4365 14 6 3.5814 -1.2116 -0.0002 15 9 4.2572 -2.3815 -0.0006 16 6 2.1965 -1.2059 -0.0004 17 8 1.5118 -2.3806 -0.0012 18 6 1.1855 -2.9405 -1.2749 19 9 0.3882 -2.0402 -1.9896 20 9 2.3620 -3.1906 -1.9895 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6473 2.1345 -0.0004 25 1 4.0885 2.1637 0.0001 26 1 8.1170 2.0269 -0.7440 27 1 0.6417 -3.8744 -1.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661663.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:49 Heat of formation + Delta-G solvation = -203.708422 kcal Electronic energy + Delta-G solvation = -18290.329251 eV Core-core repulsion = 14790.000242 eV Total energy + Delta-G solvation = -3500.329009 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.02758 -49.39236 -48.15362 -40.50979 -38.38795 -35.72063 -33.39745 -30.87637 -29.62006 -26.90570 -25.41808 -23.32966 -22.42719 -20.34114 -19.14847 -18.79088 -18.56802 -17.93486 -17.50981 -16.79948 -16.30862 -16.02872 -15.35948 -15.04177 -14.88170 -14.63790 -14.49832 -14.39495 -13.98580 -13.72849 -13.58205 -13.32995 -13.01872 -12.90232 -12.72180 -12.38272 -11.91607 -11.73389 -11.57312 -11.08838 -9.54005 -9.46632 -9.02849 -6.63777 0.20785 0.48093 1.21239 1.36272 1.44607 1.99118 2.09847 2.47102 2.71490 3.18279 3.60278 3.74634 3.79406 4.14397 4.26961 4.53687 4.66650 4.71403 4.85692 4.96409 5.18948 5.21104 5.41720 5.54856 5.70161 5.72727 6.02668 6.23806 6.50614 6.60359 8.05527 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.009502 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.075857 B = 2946.048629 C = 3331.270137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.181 4.181 3 C -0.070 4.070 4 C -0.215 4.215 5 C 0.048 3.952 6 C -0.476 4.476 7 H 0.052 0.948 8 C 0.050 3.950 9 N -0.834 5.834 10 Si 0.964 3.036 11 H -0.237 1.237 12 H -0.271 1.271 13 H -0.256 1.256 14 C -0.043 4.043 15 F -0.159 7.159 16 C 0.067 3.933 17 O -0.337 6.337 18 C 0.396 3.604 19 F -0.209 7.209 20 F -0.223 7.223 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.154 0.846 25 H 0.121 0.879 26 H 0.300 0.700 27 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 -1.032 -2.913 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.183 4.183 3 C -0.088 4.088 4 C -0.234 4.234 5 C 0.045 3.955 6 C -0.505 4.505 7 H 0.070 0.930 8 C -0.167 4.167 9 N -0.459 5.459 10 Si 0.785 3.215 11 H -0.161 1.161 12 H -0.197 1.197 13 H -0.180 1.180 14 C -0.063 4.063 15 F -0.138 7.138 16 C 0.024 3.976 17 O -0.257 6.257 18 C 0.308 3.692 19 F -0.190 7.190 20 F -0.205 7.205 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.172 0.828 25 H 0.138 0.862 26 H 0.111 0.889 27 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.689 -1.066 -2.789 14.011 hybrid contribution 0.986 -0.105 -0.480 1.102 sum -12.703 -1.172 -3.269 13.169 Atomic orbital electron populations 1.20524 0.88265 1.03129 1.02221 1.19864 0.97799 0.90336 1.10267 1.20703 0.93051 0.97895 0.97138 1.20929 0.95040 0.96206 1.11220 1.17807 0.93755 0.90900 0.93035 1.19314 0.90619 1.06899 1.33640 0.93017 1.26906 0.95497 0.97151 0.97145 1.69703 1.11776 1.28161 1.36242 0.85514 0.78932 0.78966 0.78045 1.16071 1.19718 1.17967 1.18420 0.89207 0.81551 1.17171 1.91277 1.81045 1.46466 1.94997 1.18311 0.87247 0.85749 1.06288 1.86516 1.73227 1.36898 1.29079 1.24475 0.77784 0.92001 0.74944 1.93033 1.73790 1.72392 1.79830 1.93065 1.52949 1.94443 1.80073 0.91415 0.91848 0.89915 0.82806 0.86185 0.88884 0.75352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.36 8.79 71.24 0.63 -1.74 15 2 C -0.18 -6.86 5.76 -19.60 -0.11 -6.97 15 3 C -0.07 -2.65 9.61 21.98 0.21 -2.44 15 4 C -0.21 -9.71 7.12 22.49 0.16 -9.55 15 5 C 0.05 2.56 5.11 -21.26 -0.11 2.45 15 6 C -0.48 -27.66 9.26 23.43 0.22 -27.44 15 7 H 0.05 3.33 7.97 -2.91 -0.02 3.30 15 8 C 0.05 2.64 5.40 85.25 0.46 3.10 15 9 N -0.83 -45.23 13.93 21.82 0.30 -44.92 15 10 Si 0.96 40.99 24.52 68.60 1.68 42.67 15 11 H -0.24 -8.90 6.71 99.48 0.67 -8.23 15 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 13 H -0.26 -11.32 6.86 99.48 0.68 -10.64 15 14 C -0.04 -2.21 7.03 22.97 0.16 -2.05 15 15 F -0.16 -8.57 16.28 44.97 0.73 -7.84 15 16 C 0.07 2.93 5.31 22.49 0.12 3.05 15 17 O -0.34 -12.45 9.25 -93.21 -0.86 -13.31 15 18 C 0.40 11.49 6.35 113.37 0.72 12.21 15 19 F -0.21 -6.18 15.17 44.97 0.68 -5.49 15 20 F -0.22 -8.23 16.64 44.97 0.75 -7.48 15 21 H 0.07 1.79 7.28 -2.39 -0.02 1.77 15 22 H 0.06 1.70 7.51 -2.39 -0.02 1.68 15 23 H 0.08 1.88 8.08 -2.39 -0.02 1.86 15 24 H 0.15 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.12 5.17 4.73 -2.91 -0.01 5.16 15 26 H 0.30 14.35 8.30 -92.70 -0.77 13.58 15 27 H 0.23 3.53 8.14 -2.39 -0.02 3.51 15 Total: -1.00 -66.32 246.29 6.89 -59.43 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.15 Total: 6.32 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.46 Total: -29.36 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.30 Total: -44.92 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.86 Total: -13.31 kcal Atomic # 9 Polarization: -22.98 SS G_CDS: 2.16 Total: -20.82 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.68 Total: 42.67 kcal Total: -66.32 6.89 -59.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661663.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.281 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds