Wall clock time and date at job start Mon Mar 30 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38452 * 119.75673 * 2 1 4 4 C 1.37950 * 120.26883 * 180.02562 * 3 2 1 5 5 F 1.35096 * 120.10606 * 179.97438 * 4 3 2 6 6 C 1.41030 * 119.78419 * 0.27348 * 4 3 2 7 7 C 1.41285 * 120.23375 * 179.69821 * 6 4 3 8 8 H 1.07997 * 120.00199 * 24.52114 * 7 6 4 9 9 C 1.39930 * 120.00049 * 204.51263 * 7 6 4 10 10 N 1.30846 * 119.99562 * 17.78109 * 9 7 6 11 11 Si 1.86797 * 120.00055 * 197.77871 * 9 7 6 12 12 H 1.48498 * 109.47172 * 60.00292 * 11 9 7 13 13 H 1.48502 * 109.47106 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.46970 * 299.99992 * 11 9 7 15 15 C 1.40639 * 119.52386 * 359.44650 * 6 4 3 16 16 C 1.38026 * 119.72864 * 0.55347 * 15 6 4 17 17 O 1.35931 * 119.89626 * 179.74100 * 16 15 6 18 18 C 1.42898 * 117.00489 * 359.97438 * 17 16 15 19 19 F 1.39901 * 109.47020 * 300.00170 * 18 17 16 20 20 F 1.39904 * 109.46806 * 59.99567 * 18 17 16 21 21 H 1.08996 * 109.47208 * 90.00730 * 1 2 3 22 22 H 1.08999 * 109.46943 * 210.00595 * 1 2 3 23 23 H 1.09002 * 109.47055 * 330.00596 * 1 2 3 24 24 H 1.07994 * 119.86748 * 0.03307 * 3 2 1 25 25 H 0.97003 * 120.00194 * 179.97438 * 10 9 7 26 26 H 1.08000 * 120.13514 * 180.27483 * 15 6 4 27 27 H 1.08991 * 109.47488 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2020 0.0000 4 6 3.5736 1.2143 -0.0005 5 9 4.2407 2.3890 -0.0011 6 6 4.2850 -0.0034 -0.0069 7 6 5.6979 -0.0018 -0.0140 8 1 6.2389 0.8488 0.3735 9 6 6.3962 -1.1025 -0.5228 10 7 5.7859 -1.9641 -1.2955 11 14 8.1997 -1.3416 -0.0989 12 1 8.3493 -1.4710 1.3728 13 1 8.7042 -2.5728 -0.7584 14 1 8.9794 -0.1708 -0.5747 15 6 3.5781 -1.2192 -0.0009 16 6 2.1978 -1.2084 -0.0003 17 8 1.5111 -2.3814 0.0002 18 6 2.2821 -3.5846 -0.0004 19 9 3.0881 -3.6214 -1.1433 20 9 3.0899 -3.6213 1.1412 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6480 2.1337 0.0005 25 1 6.2700 -2.7269 -1.6486 26 1 4.1129 -2.1574 -0.0012 27 1 1.6129 -4.4449 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661710.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:26 Heat of formation + Delta-G solvation = -202.715874 kcal Electronic energy + Delta-G solvation = -18245.201038 eV Core-core repulsion = 14744.915069 eV Total energy + Delta-G solvation = -3500.285969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.04363 -49.21509 -48.06724 -40.48176 -37.95321 -35.87335 -32.93526 -30.41387 -29.34574 -26.95850 -25.59748 -23.19252 -22.23019 -20.05392 -19.20704 -18.62897 -18.36373 -17.65613 -16.88492 -16.83355 -16.08493 -15.92291 -15.26940 -14.72431 -14.69386 -14.51646 -14.41485 -14.36063 -13.90356 -13.65597 -13.53588 -13.35334 -13.02672 -12.81193 -12.48282 -12.33826 -11.99989 -11.78490 -11.38107 -11.03102 -9.49031 -8.97336 -8.68555 -6.47989 0.70749 0.78218 1.33466 1.44301 1.47672 1.93602 2.14903 2.53392 2.80995 3.37808 3.71703 3.90540 3.96426 4.24206 4.40404 4.64526 4.75554 4.98139 5.01230 5.02763 5.16475 5.32646 5.56029 5.71047 5.94851 5.98137 6.15874 6.48164 6.70192 6.80364 8.19287 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.012197 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.038581 B = 2295.125068 C = 3511.440803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.206 4.206 3 C -0.091 4.091 4 C -0.077 4.077 5 F -0.168 7.168 6 C 0.074 3.926 7 C -0.491 4.491 8 H 0.074 0.926 9 C 0.037 3.963 10 N -0.798 5.798 11 Si 0.984 3.016 12 H -0.260 1.260 13 H -0.260 1.260 14 H -0.259 1.259 15 C -0.240 4.240 16 C 0.105 3.895 17 O -0.328 6.328 18 C 0.399 3.601 19 F -0.209 7.209 20 F -0.220 7.220 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.142 0.858 25 H 0.293 0.707 26 H 0.140 0.860 27 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -5.190 1.612 8.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C -0.110 4.110 4 C -0.097 4.097 5 F -0.148 7.148 6 C 0.071 3.929 7 C -0.519 4.519 8 H 0.093 0.907 9 C -0.181 4.181 10 N -0.422 5.422 11 Si 0.803 3.197 12 H -0.184 1.184 13 H -0.183 1.183 14 H -0.184 1.184 15 C -0.260 4.260 16 C 0.062 3.938 17 O -0.245 6.245 18 C 0.310 3.690 19 F -0.190 7.190 20 F -0.202 7.202 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.159 0.841 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.217 -5.394 1.449 8.357 hybrid contribution 1.503 0.182 -0.004 1.514 sum -4.714 -5.212 1.445 7.175 Atomic orbital electron populations 1.20329 0.88550 1.02468 1.01708 1.18847 0.97199 0.88504 1.16267 1.20537 0.91038 0.98333 1.01045 1.18150 0.90692 0.80721 1.20130 1.91232 1.81771 1.46166 1.95593 1.17746 0.94537 0.90199 0.90452 1.19684 0.91510 1.03625 1.37040 0.90739 1.26790 1.05854 0.93688 0.91754 1.69852 1.40716 1.10762 1.20843 0.85226 0.75488 0.79107 0.79833 1.18407 1.18336 1.18369 1.21629 0.91577 0.99893 1.12919 1.18732 0.90458 0.84835 0.99803 1.86413 1.36271 1.12958 1.88907 1.24263 0.82691 0.90928 0.71121 1.93115 1.76927 1.96558 1.52444 1.93034 1.77239 1.96648 1.53243 0.92034 0.91762 0.90936 0.84071 0.89618 0.84309 0.74824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 9.78 71.23 0.70 -1.66 15 2 C -0.21 -8.86 5.91 -19.59 -0.12 -8.98 15 3 C -0.09 -4.09 9.64 22.25 0.21 -3.88 15 4 C -0.08 -4.08 7.31 22.89 0.17 -3.91 15 5 F -0.17 -8.86 16.71 44.97 0.75 -8.11 15 6 C 0.07 4.20 5.57 -21.26 -0.12 4.08 15 7 C -0.49 -27.77 8.78 23.43 0.21 -27.56 15 8 H 0.07 4.19 7.73 -2.91 -0.02 4.16 15 9 C 0.04 1.90 5.14 85.25 0.44 2.34 15 10 N -0.80 -41.78 10.97 21.82 0.24 -41.54 15 11 Si 0.98 38.95 29.60 68.60 2.03 40.98 15 12 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 13 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 14 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 15 C -0.24 -12.77 6.89 22.81 0.16 -12.61 15 16 C 0.10 4.88 6.45 22.45 0.14 5.03 15 17 O -0.33 -12.57 9.45 -92.77 -0.88 -13.44 15 18 C 0.40 13.02 5.98 113.37 0.68 13.70 15 19 F -0.21 -8.32 15.58 44.97 0.70 -7.62 15 20 F -0.22 -8.34 15.57 44.97 0.70 -7.64 15 21 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.06 1.93 7.51 -2.39 -0.02 1.91 15 23 H 0.07 1.98 8.08 -2.39 -0.02 1.96 15 24 H 0.14 5.34 8.06 -2.91 -0.02 5.31 15 25 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 26 H 0.14 7.48 3.19 -2.91 -0.01 7.47 15 27 H 0.24 4.07 8.14 -2.39 -0.02 4.05 15 Total: -1.00 -65.81 249.78 7.23 -58.57 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.22 Total: 12.26 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 2.47 Total: -33.46 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.24 Total: -41.54 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.88 Total: -13.44 kcal Atomic # 9 Polarization: -25.52 SS G_CDS: 2.15 Total: -23.37 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -65.81 7.23 -58.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661710.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.143 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds