Wall clock time and date at job start Mon Mar 30 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38831 * 119.72516 * 2 1 4 4 C 1.38457 * 120.56831 * 179.97438 * 3 2 1 5 5 F 1.35098 * 119.99152 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.00865 * 359.71988 * 4 3 2 7 7 O 1.35694 * 120.27348 * 180.29904 * 6 4 3 8 8 C 1.42902 * 117.00298 * 270.27825 * 7 6 4 9 9 F 1.39905 * 109.46913 * 299.99986 * 8 7 6 10 10 F 1.39901 * 109.47096 * 59.99659 * 8 7 6 11 11 C 1.41241 * 119.45010 * 0.57354 * 6 4 3 12 12 C 1.41163 * 120.27539 * 179.70079 * 11 6 4 13 13 H 1.08007 * 120.00302 * 28.46644 * 12 11 6 14 14 C 1.39927 * 120.00402 * 208.46912 * 12 11 6 15 15 N 1.30866 * 120.00390 * 197.71039 * 14 12 11 16 16 Si 1.86799 * 119.99624 * 17.70471 * 14 12 11 17 17 H 1.48500 * 109.47203 * 270.00123 * 16 14 12 18 18 H 1.48504 * 109.47139 * 30.00409 * 16 14 12 19 19 H 1.48499 * 109.47189 * 150.00403 * 16 14 12 20 20 C 1.36472 * 119.71902 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47489 * 269.97887 * 1 2 3 22 22 H 1.09000 * 109.47119 * 29.97686 * 1 2 3 23 23 H 1.09000 * 109.47420 * 149.97747 * 1 2 3 24 24 H 1.08004 * 119.71245 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.47135 * 179.97438 * 8 7 6 26 26 H 0.97002 * 119.99557 * 355.43390 * 15 14 12 27 27 H 1.07997 * 120.01514 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.2056 0.0000 4 6 3.5797 1.2260 0.0005 5 9 4.2378 2.4059 0.0000 6 6 4.2908 0.0356 0.0069 7 8 5.6477 0.0493 0.0136 8 6 6.3027 0.0590 -1.2564 9 9 5.9419 -1.0854 -1.9759 10 9 5.9187 1.1991 -1.9705 11 6 3.5911 -1.1913 0.0006 12 6 4.2976 -2.4134 0.0006 13 1 5.2777 -2.4707 0.4507 14 6 3.7281 -3.5508 -0.5826 15 7 4.1957 -4.7384 -0.2933 16 14 2.3003 -3.3740 -1.7740 17 1 1.0200 -3.4225 -1.0230 18 1 2.4076 -2.0752 -2.4860 19 1 2.3380 -4.4837 -2.7600 20 6 2.1835 -1.1852 -0.0005 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6462 2.1356 -0.0004 25 1 7.3825 0.0700 -1.1082 26 1 4.9784 -4.8267 0.2729 27 1 1.6392 -2.1180 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661933.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:17 Heat of formation + Delta-G solvation = -207.862443 kcal Electronic energy + Delta-G solvation = -18438.125916 eV Core-core repulsion = 14937.616775 eV Total energy + Delta-G solvation = -3500.509141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.94743 -49.72231 -48.02615 -40.35610 -38.24552 -35.90160 -32.91476 -31.77967 -27.96166 -27.18739 -25.79907 -23.50174 -21.88073 -20.25123 -19.67222 -18.98396 -18.65017 -17.51461 -17.38766 -16.90777 -16.37069 -15.80270 -15.42594 -14.93677 -14.71304 -14.65288 -14.44096 -14.30366 -14.15633 -14.06542 -13.63945 -13.13426 -12.97252 -12.57272 -12.49141 -12.17764 -11.82908 -11.60613 -11.44548 -10.91508 -9.77908 -9.39198 -9.30499 -6.72046 0.27728 0.54975 1.32342 1.51509 1.72547 2.09692 2.24436 2.55152 2.81227 3.25395 3.44704 3.80653 3.91773 4.09013 4.30995 4.53048 4.62181 4.79500 4.92444 5.02948 5.14145 5.31047 5.43755 5.46632 5.69897 5.90919 5.98685 6.23706 6.52221 6.69104 7.85436 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.014087 C = 0.009327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.722133 B = 1987.103911 C = 3001.250799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.013 4.013 3 C -0.266 4.266 4 C 0.127 3.873 5 F -0.149 7.149 6 C -0.119 4.119 7 O -0.327 6.327 8 C 0.383 3.617 9 F -0.215 7.215 10 F -0.221 7.221 11 C 0.094 3.906 12 C -0.495 4.495 13 H 0.055 0.945 14 C 0.018 3.982 15 N -0.818 5.818 16 Si 1.093 2.907 17 H -0.239 1.239 18 H -0.269 1.269 19 H -0.278 1.278 20 C -0.255 4.255 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.145 0.855 25 H 0.210 0.790 26 H 0.283 0.717 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 6.463 -1.995 7.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.013 4.013 3 C -0.286 4.286 4 C 0.107 3.893 5 F -0.128 7.128 6 C -0.164 4.164 7 O -0.246 6.246 8 C 0.295 3.705 9 F -0.197 7.197 10 F -0.203 7.203 11 C 0.090 3.910 12 C -0.523 4.523 13 H 0.073 0.927 14 C -0.199 4.199 15 N -0.440 5.440 16 Si 0.913 3.087 17 H -0.163 1.163 18 H -0.193 1.193 19 H -0.204 1.204 20 C -0.274 4.274 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.091 0.909 24 H 0.163 0.837 25 H 0.225 0.775 26 H 0.094 0.906 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.209 5.538 -2.725 7.471 hybrid contribution 2.043 0.819 0.912 2.383 sum -2.166 6.357 -1.813 6.956 Atomic orbital electron populations 1.20899 0.88293 1.03846 1.03699 1.19600 0.97656 0.91208 0.92854 1.20565 0.90223 0.99521 1.18292 1.18111 0.91420 0.79043 1.00706 1.91374 1.81887 1.45609 1.93901 1.18597 0.81733 0.92039 1.24056 1.86535 1.18171 1.92384 1.27550 1.24413 0.98867 0.70766 0.76503 1.93063 1.94188 1.52643 1.79845 1.92998 1.93839 1.53249 1.80250 1.17947 0.92878 0.91744 0.88399 1.20454 1.03991 0.94699 1.33173 0.92716 1.28329 1.03634 0.90520 0.97455 1.70602 1.19685 1.25138 1.28567 0.83400 0.73609 0.76880 0.74830 1.16349 1.19347 1.20442 1.20972 0.92912 0.98472 1.15038 0.89365 0.89519 0.90887 0.83696 0.77451 0.90581 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.98 9.99 71.23 0.71 -2.27 15 2 C -0.01 -0.49 5.84 -20.14 -0.12 -0.61 15 3 C -0.27 -10.50 9.66 22.46 0.22 -10.29 15 4 C 0.13 5.76 7.02 22.42 0.16 5.91 15 5 F -0.15 -6.51 16.75 44.97 0.75 -5.75 15 6 C -0.12 -5.92 5.37 23.11 0.12 -5.79 15 7 O -0.33 -15.36 9.57 -90.13 -0.86 -16.22 15 8 C 0.38 15.04 6.35 113.37 0.72 15.76 15 9 F -0.22 -9.75 15.83 44.97 0.71 -9.03 15 10 F -0.22 -8.94 16.61 44.97 0.75 -8.19 15 11 C 0.09 4.79 5.03 -21.21 -0.11 4.69 15 12 C -0.50 -26.70 7.80 23.40 0.18 -26.51 15 13 H 0.05 3.18 7.87 -2.91 -0.02 3.15 15 14 C 0.02 0.90 5.42 85.25 0.46 1.37 15 15 N -0.82 -43.14 13.66 21.83 0.30 -42.84 15 16 Si 1.09 46.48 24.90 68.60 1.71 48.19 15 17 H -0.24 -8.80 6.43 99.48 0.64 -8.16 15 18 H -0.27 -11.70 7.03 99.48 0.70 -11.00 15 19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 15 20 C -0.26 -11.43 6.84 22.47 0.15 -11.28 15 21 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.09 1.91 8.08 -2.39 -0.02 1.89 15 23 H 0.07 1.84 8.07 -2.39 -0.02 1.82 15 24 H 0.15 4.72 8.06 -2.91 -0.02 4.70 15 25 H 0.21 5.58 8.14 -2.39 -0.02 5.56 15 26 H 0.28 14.80 8.73 -92.71 -0.81 13.99 15 27 H 0.12 5.25 4.38 -2.91 -0.01 5.24 15 Total: -1.00 -61.27 248.68 6.96 -54.31 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.10 Total: 8.58 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 2.50 Total: -29.03 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.30 Total: -42.84 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.86 Total: -16.22 kcal Atomic # 9 Polarization: -25.19 SS G_CDS: 2.21 Total: -22.98 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.71 Total: 48.19 kcal Total: -61.27 6.96 -54.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661933.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.555 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds