Wall clock time and date at job start Mon Mar 30 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36490 * 120.07604 * 2 1 4 4 C 1.39221 * 120.20822 * 179.97438 * 3 2 1 5 5 O 1.35706 * 119.82995 * 180.02562 * 4 3 2 6 6 C 1.42906 * 116.99924 * 0.02562 * 5 4 3 7 7 F 1.39903 * 109.47161 * 59.99721 * 6 5 4 8 8 F 1.39892 * 109.46803 * 299.99354 * 6 5 4 9 9 C 1.39567 * 120.34058 * 0.29543 * 4 3 2 10 10 F 1.35109 * 119.92396 * 179.72555 * 9 4 3 11 11 C 1.36568 * 120.14352 * 359.44580 * 9 4 3 12 12 C 1.40819 * 120.07218 * 180.02562 * 2 1 3 13 13 C 1.41207 * 120.17061 * 359.97438 * 12 2 1 14 14 H 1.08001 * 119.99805 * 25.94825 * 13 12 2 15 15 C 1.39882 * 120.00134 * 205.94664 * 13 12 2 16 16 N 1.30885 * 119.99985 * 17.33888 * 15 13 12 17 17 Si 1.86799 * 119.99708 * 197.34347 * 15 13 12 18 18 H 1.48495 * 109.47242 * 94.50585 * 17 15 13 19 19 H 1.48507 * 109.46764 * 214.50141 * 17 15 13 20 20 H 1.48499 * 109.47352 * 334.49926 * 17 15 13 21 21 H 1.09002 * 109.47321 * 89.99924 * 1 2 3 22 22 H 1.08995 * 109.47836 * 210.00167 * 1 2 3 23 23 H 1.09003 * 109.47269 * 330.00447 * 1 2 3 24 24 H 1.07995 * 119.89814 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.46800 * 179.97438 * 6 5 4 26 26 H 1.08005 * 120.10296 * 180.25022 * 11 9 4 27 27 H 0.96997 * 119.99677 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1811 0.0000 4 6 3.5832 1.1843 0.0005 5 8 4.2555 2.3632 0.0011 6 6 3.4708 3.5575 0.0016 7 9 2.6635 3.5846 1.1439 8 9 2.6638 3.5857 -1.1407 9 6 4.2910 -0.0185 -0.0051 10 9 5.6420 -0.0056 -0.0102 11 6 3.6209 -1.2085 0.0002 12 6 2.2126 -1.2186 -0.0005 13 6 1.5117 -2.4445 -0.0005 14 1 0.5134 -2.4958 -0.4094 15 6 2.1104 -3.5925 0.5290 16 7 3.1498 -3.4843 1.3171 17 14 1.4265 -5.2798 0.1113 18 1 2.1698 -5.8430 -1.0444 19 1 1.5783 -6.1794 1.2831 20 1 -0.0120 -5.1587 -0.2367 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6506 2.1162 0.0004 25 1 4.1303 4.4254 0.0024 26 1 4.1693 -2.1390 -0.0001 27 1 3.5652 -4.2804 1.6839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:36 Heat of formation + Delta-G solvation = -183.944392 kcal Electronic energy + Delta-G solvation = -17912.375966 eV Core-core repulsion = 14412.903989 eV Total energy + Delta-G solvation = -3499.471976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.84408 -47.66915 -46.84702 -38.61847 -36.78248 -33.59870 -31.14362 -29.49016 -26.34508 -26.04672 -24.09401 -21.57899 -20.34946 -18.10506 -17.86815 -17.40094 -17.07869 -15.88086 -15.37786 -14.74898 -14.58759 -14.40380 -13.76340 -13.24615 -13.20249 -12.93394 -12.89528 -12.74941 -12.44310 -12.29181 -11.95785 -11.72340 -11.24803 -11.19865 -10.80911 -10.69167 -10.06956 -9.88139 -9.76386 -9.23602 -7.59007 -7.22089 -6.90006 -4.50186 2.49167 2.65508 3.00221 3.04179 3.05134 3.33707 3.81847 3.97649 4.35330 4.77907 5.10574 5.35874 5.48002 5.90083 6.23948 6.26248 6.56223 6.61629 6.72270 6.86162 6.97000 7.05182 7.41230 7.51047 7.63395 7.92787 8.07861 8.38610 8.66546 8.70463 10.01536 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.033965 B = 0.007468 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.187542 B = 3748.245792 C = 4321.385466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.176 4.176 3 C -0.120 4.120 4 C -0.075 4.075 5 O -0.323 6.323 6 C 0.412 3.588 7 F -0.207 7.207 8 F -0.207 7.207 9 C 0.109 3.891 10 F -0.158 7.158 11 C -0.180 4.180 12 C 0.119 3.881 13 C -0.448 4.448 14 H 0.088 0.912 15 C 0.074 3.926 16 N -0.784 5.784 17 Si 0.913 3.087 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.260 1.260 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.112 0.888 25 H 0.166 0.834 26 H 0.137 0.863 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 6.360 -1.616 6.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.178 4.178 3 C -0.139 4.139 4 C -0.118 4.118 5 O -0.242 6.242 6 C 0.320 3.680 7 F -0.189 7.189 8 F -0.189 7.189 9 C 0.089 3.911 10 F -0.137 7.137 11 C -0.200 4.200 12 C 0.116 3.884 13 C -0.476 4.476 14 H 0.106 0.894 15 C -0.146 4.146 16 N -0.409 5.409 17 Si 0.737 3.263 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.184 1.184 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.130 0.870 25 H 0.182 0.818 26 H 0.155 0.845 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.534 6.230 -1.456 6.420 hybrid contribution -0.240 -0.626 -0.037 0.672 sum -0.774 5.603 -1.493 5.850 Atomic orbital electron populations 1.20411 0.92588 1.01045 1.00131 1.19393 0.95078 0.92175 1.11146 1.20428 0.90973 0.98558 1.03904 1.18277 0.90953 0.82347 1.20178 1.86388 1.34775 1.12476 1.90529 1.23080 0.81695 0.91408 0.71793 1.93058 1.76546 1.96835 1.52441 1.93049 1.76580 1.96837 1.52471 1.16684 0.75435 0.91932 1.07027 1.91351 1.30196 1.97472 1.94696 1.20904 0.95274 0.94865 1.08983 1.17269 0.90530 0.92167 0.88386 1.19576 1.02052 0.92010 1.33967 0.89434 1.26008 0.94204 1.01842 0.92524 1.69830 1.18047 1.32302 1.20705 0.86218 0.80523 0.80542 0.79058 1.19153 1.20141 1.18351 0.93492 0.91544 0.94009 0.87046 0.81795 0.84503 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.39 36.00 0.34 -1.37 15 2 C -0.18 -4.20 5.90 -104.28 -0.62 -4.82 15 3 C -0.12 -2.77 7.82 -39.85 -0.31 -3.08 15 4 C -0.07 -1.79 6.52 -38.72 -0.25 -2.04 15 5 O -0.32 -6.71 10.28 -18.82 -0.19 -6.90 15 6 C 0.41 6.51 5.98 101.05 0.60 7.11 15 7 F -0.21 -3.57 15.56 2.25 0.04 -3.53 15 8 F -0.21 -3.52 15.56 2.25 0.04 -3.48 15 9 C 0.11 2.76 7.26 -39.69 -0.29 2.47 15 10 F -0.16 -3.89 17.10 2.25 0.04 -3.85 15 11 C -0.18 -4.71 8.60 -39.20 -0.34 -5.05 15 12 C 0.12 3.08 5.56 -106.81 -0.59 2.49 15 13 C -0.45 -11.15 8.10 -37.84 -0.31 -11.46 15 14 H 0.09 2.06 6.88 -52.49 -0.36 1.70 15 15 C 0.07 1.76 5.13 -17.34 -0.09 1.67 15 16 N -0.78 -19.60 11.02 55.54 0.61 -18.98 15 17 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 15 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 20 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.07 1.34 6.77 -51.93 -0.35 0.98 15 23 H 0.04 0.76 8.08 -51.93 -0.42 0.34 15 24 H 0.11 2.37 5.06 -52.49 -0.27 2.11 15 25 H 0.17 1.63 8.14 -51.93 -0.42 1.21 15 26 H 0.14 3.66 6.24 -52.48 -0.33 3.34 15 27 H 0.28 6.45 8.30 -40.82 -0.34 6.12 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -28.03 248.31 -4.32 -32.34 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -1.70 Total: 2.02 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -1.85 Total: -14.08 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.19 Total: -6.90 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 0.11 Total: -10.87 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.03 -4.32 -32.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.601 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds