Wall clock time and date at job start Mon Mar 30 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36490 * 120.07604 * 2 1 4 4 C 1.39221 * 120.20822 * 179.97438 * 3 2 1 5 5 O 1.35706 * 119.82995 * 180.02562 * 4 3 2 6 6 C 1.42906 * 116.99924 * 0.02562 * 5 4 3 7 7 F 1.39903 * 109.47161 * 59.99721 * 6 5 4 8 8 F 1.39892 * 109.46803 * 299.99354 * 6 5 4 9 9 C 1.39567 * 120.34058 * 0.29543 * 4 3 2 10 10 F 1.35109 * 119.92396 * 179.72555 * 9 4 3 11 11 C 1.36568 * 120.14352 * 359.44580 * 9 4 3 12 12 C 1.40819 * 120.07218 * 180.02562 * 2 1 3 13 13 C 1.41207 * 120.17061 * 359.97438 * 12 2 1 14 14 H 1.08001 * 119.99805 * 25.94825 * 13 12 2 15 15 C 1.39882 * 120.00134 * 205.94664 * 13 12 2 16 16 N 1.30885 * 119.99985 * 17.33888 * 15 13 12 17 17 Si 1.86799 * 119.99708 * 197.34347 * 15 13 12 18 18 H 1.48495 * 109.47242 * 94.50585 * 17 15 13 19 19 H 1.48507 * 109.46764 * 214.50141 * 17 15 13 20 20 H 1.48499 * 109.47352 * 334.49926 * 17 15 13 21 21 H 1.09002 * 109.47321 * 89.99924 * 1 2 3 22 22 H 1.08995 * 109.47836 * 210.00167 * 1 2 3 23 23 H 1.09003 * 109.47269 * 330.00447 * 1 2 3 24 24 H 1.07995 * 119.89814 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.46800 * 179.97438 * 6 5 4 26 26 H 1.08005 * 120.10296 * 180.25022 * 11 9 4 27 27 H 0.96997 * 119.99677 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1811 0.0000 4 6 3.5832 1.1843 0.0005 5 8 4.2555 2.3632 0.0011 6 6 3.4708 3.5575 0.0016 7 9 2.6635 3.5846 1.1439 8 9 2.6638 3.5857 -1.1407 9 6 4.2910 -0.0185 -0.0051 10 9 5.6420 -0.0056 -0.0102 11 6 3.6209 -1.2085 0.0002 12 6 2.2126 -1.2186 -0.0005 13 6 1.5117 -2.4445 -0.0005 14 1 0.5134 -2.4958 -0.4094 15 6 2.1104 -3.5925 0.5290 16 7 3.1498 -3.4843 1.3171 17 14 1.4265 -5.2798 0.1113 18 1 2.1698 -5.8430 -1.0444 19 1 1.5783 -6.1794 1.2831 20 1 -0.0120 -5.1587 -0.2367 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6506 2.1162 0.0004 25 1 4.1303 4.4254 0.0024 26 1 4.1693 -2.1390 -0.0001 27 1 3.5652 -4.2804 1.6839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:36 Heat of formation + Delta-G solvation = -199.770645 kcal Electronic energy + Delta-G solvation = -17913.062244 eV Core-core repulsion = 14412.903989 eV Total energy + Delta-G solvation = -3500.158254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.15936 -49.61400 -48.16462 -40.36386 -38.50314 -35.41308 -32.94072 -31.33365 -28.07800 -27.60686 -25.74750 -23.37570 -22.12325 -19.80753 -19.48512 -18.74404 -18.60946 -17.74171 -17.07596 -16.53493 -16.40502 -16.06730 -15.18404 -14.93972 -14.65931 -14.62937 -14.47219 -14.42700 -14.05043 -13.91058 -13.63137 -13.27618 -12.87923 -12.83111 -12.51228 -12.25437 -11.84901 -11.67987 -11.53071 -11.02656 -9.47848 -9.09462 -8.70251 -6.38934 0.63830 0.76032 1.41095 1.48819 1.55562 1.95959 2.19065 2.54003 2.68347 3.43863 3.59204 3.67043 3.85257 4.13038 4.42930 4.58535 4.86242 4.96212 4.99046 5.04110 5.19044 5.27536 5.57873 5.65025 5.78620 6.06680 6.24172 6.51784 6.80675 6.82646 8.24932 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.033965 B = 0.007468 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.187542 B = 3748.245792 C = 4321.385466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.184 4.184 3 C -0.124 4.124 4 C -0.071 4.071 5 O -0.337 6.337 6 C 0.405 3.595 7 F -0.215 7.215 8 F -0.214 7.214 9 C 0.085 3.915 10 F -0.160 7.160 11 C -0.202 4.202 12 C 0.091 3.909 13 C -0.470 4.470 14 H 0.097 0.903 15 C 0.033 3.967 16 N -0.820 5.820 17 Si 0.987 3.013 18 H -0.265 1.265 19 H -0.270 1.270 20 H -0.250 1.250 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.132 0.868 25 H 0.233 0.767 26 H 0.120 0.880 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 7.004 -1.903 7.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.186 4.186 3 C -0.143 4.143 4 C -0.114 4.114 5 O -0.256 6.256 6 C 0.316 3.684 7 F -0.197 7.197 8 F -0.195 7.195 9 C 0.065 3.935 10 F -0.139 7.139 11 C -0.222 4.222 12 C 0.088 3.912 13 C -0.498 4.498 14 H 0.115 0.885 15 C -0.183 4.183 16 N -0.445 5.445 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.173 1.173 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.149 0.851 25 H 0.249 0.751 26 H 0.138 0.862 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.682 6.903 -1.743 7.315 hybrid contribution 0.140 -0.689 0.066 0.706 sum -1.542 6.214 -1.677 6.618 Atomic orbital electron populations 1.20433 0.89973 1.01897 1.01474 1.19892 0.97189 0.91759 1.09716 1.20674 0.90826 0.99194 1.03563 1.18353 0.91258 0.83227 1.18585 1.86370 1.36129 1.12741 1.90363 1.24166 0.82255 0.91083 0.70943 1.93039 1.76966 1.96720 1.52966 1.93033 1.76945 1.96712 1.52856 1.16893 0.75574 0.92778 1.08214 1.91326 1.30227 1.97533 1.94820 1.20848 0.95872 0.94645 1.10860 1.17632 0.90604 0.93609 0.89326 1.19865 1.02695 0.92551 1.34672 0.88508 1.26910 0.94207 1.05512 0.91685 1.69894 1.19318 1.33757 1.21545 0.85108 0.80095 0.75347 0.78754 1.18949 1.19505 1.17306 0.91754 0.91881 0.91933 0.85059 0.75142 0.86239 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.11 9.39 71.23 0.67 -2.44 15 2 C -0.18 -8.67 5.90 -19.64 -0.12 -8.79 15 3 C -0.12 -5.60 7.82 22.10 0.17 -5.43 15 4 C -0.07 -3.36 6.52 22.83 0.15 -3.21 15 5 O -0.34 -13.47 10.28 -90.27 -0.93 -14.40 15 6 C 0.40 11.59 5.98 113.37 0.68 12.27 15 7 F -0.21 -6.86 15.56 44.97 0.70 -6.16 15 8 F -0.21 -6.67 15.56 44.97 0.70 -5.97 15 9 C 0.08 4.41 7.26 22.20 0.16 4.57 15 10 F -0.16 -8.06 17.10 44.97 0.77 -7.29 15 11 C -0.20 -10.94 8.60 22.52 0.19 -10.75 15 12 C 0.09 4.78 5.56 -21.28 -0.12 4.66 15 13 C -0.47 -23.54 8.10 23.40 0.19 -23.35 15 14 H 0.10 4.51 6.88 -2.91 -0.02 4.49 15 15 C 0.03 1.59 5.13 85.23 0.44 2.02 15 16 N -0.82 -41.84 11.02 21.82 0.24 -41.60 15 17 Si 0.99 36.03 29.59 68.60 2.03 38.06 15 18 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 19 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 20 H -0.25 -8.65 7.11 99.48 0.71 -7.95 15 21 H 0.06 2.23 8.14 -2.39 -0.02 2.22 15 22 H 0.06 2.45 6.77 -2.39 -0.02 2.43 15 23 H 0.06 2.11 8.08 -2.39 -0.02 2.09 15 24 H 0.13 5.31 5.06 -2.91 -0.01 5.29 15 25 H 0.23 3.47 8.14 -2.39 -0.02 3.45 15 26 H 0.12 6.74 6.24 -2.91 -0.02 6.72 15 27 H 0.29 13.46 8.30 -92.71 -0.77 12.69 15 Total: -1.00 -61.17 248.31 7.15 -54.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.22 Total: 13.79 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 2.42 Total: -30.45 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.24 Total: -41.60 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.93 Total: -14.40 kcal Atomic # 9 Polarization: -21.59 SS G_CDS: 2.17 Total: -19.42 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -61.17 7.15 -54.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.752 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds