Wall clock time and date at job start Mon Mar 30 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38783 * 119.78657 * 2 1 4 4 F 1.35099 * 119.87896 * 0.25219 * 3 2 1 5 5 C 1.37862 * 120.24804 * 180.27211 * 3 2 1 6 6 C 1.40722 * 119.83568 * 0.02562 * 5 3 2 7 7 C 1.41399 * 120.20691 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00203 * 150.18220 * 7 6 5 9 9 C 1.39929 * 119.99899 * 330.18681 * 7 6 5 10 10 N 1.30835 * 120.00188 * 161.73532 * 9 7 6 11 11 Si 1.86798 * 120.00098 * 341.73000 * 9 7 6 12 12 H 1.48494 * 109.47253 * 95.41242 * 11 9 7 13 13 H 1.48502 * 109.47232 * 215.41848 * 11 9 7 14 14 H 1.48498 * 109.46890 * 335.41453 * 11 9 7 15 15 C 1.40620 * 119.59090 * 359.97087 * 6 5 3 16 16 C 1.38155 * 119.73825 * 0.02562 * 15 6 5 17 17 O 1.35901 * 119.91556 * 179.97438 * 16 15 6 18 18 C 1.42901 * 117.00153 * 0.02562 * 17 16 15 19 19 F 1.39901 * 109.47070 * 299.99685 * 18 17 16 20 20 F 1.39898 * 109.47207 * 59.99706 * 18 17 16 21 21 H 1.08999 * 109.47632 * 269.72627 * 1 2 3 22 22 H 1.08998 * 109.47109 * 29.72834 * 1 2 3 23 23 H 1.09008 * 109.47111 * 149.72620 * 1 2 3 24 24 H 1.08004 * 120.08193 * 179.97438 * 5 3 2 25 25 H 0.96998 * 120.00446 * 179.97438 * 10 9 7 26 26 H 1.07991 * 120.13043 * 180.02562 * 15 6 5 27 27 H 1.09001 * 109.47284 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2045 0.0000 4 9 1.5142 2.3705 0.0052 5 6 3.5750 1.2156 -0.0057 6 6 4.2849 0.0006 -0.0120 7 6 5.6989 0.0028 -0.0173 8 1 6.2420 -0.8092 0.4433 9 6 6.3946 1.0572 -0.6192 10 7 7.6543 1.2596 -0.3294 11 14 5.5249 2.1756 -1.8366 12 1 5.0299 3.3851 -1.1314 13 1 6.4750 2.5791 -2.9042 14 1 4.3784 1.4517 -2.4420 15 6 3.5794 -1.2159 -0.0119 16 6 2.1979 -1.2069 -0.0061 17 8 1.5125 -2.3803 -0.0065 18 6 2.2847 -3.5827 -0.0125 19 9 3.0872 -3.6159 -1.1579 20 9 3.0960 -3.6216 1.1266 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3634 -0.8876 -0.5181 24 1 4.1088 2.1545 -0.0061 25 1 8.1367 1.9903 -0.7469 26 1 4.1154 -2.1534 -0.0163 27 1 1.6163 -4.4438 -0.0126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661959.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:02 Heat of formation + Delta-G solvation = -201.609291 kcal Electronic energy + Delta-G solvation = -18029.338095 eV Core-core repulsion = 14529.100111 eV Total energy + Delta-G solvation = -3500.237984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.17484 -49.84285 -48.19318 -40.70557 -38.28634 -35.68005 -33.56883 -30.79911 -29.58729 -27.20351 -25.44012 -23.44407 -22.52047 -20.48571 -19.02861 -18.76451 -18.70874 -17.82417 -17.24154 -16.70196 -16.60756 -16.16912 -15.66708 -15.39776 -15.01833 -14.82051 -14.53448 -14.45450 -13.91931 -13.75473 -13.69999 -13.53473 -13.16357 -13.02370 -12.79745 -12.31165 -11.89645 -11.85550 -11.76138 -11.10965 -9.51850 -9.25938 -9.05812 -6.70719 0.40361 0.51367 1.20803 1.30742 1.41049 1.71962 2.03464 2.31421 2.69231 3.16589 3.57213 3.65690 3.80189 4.06865 4.12746 4.38171 4.40525 4.69114 4.81299 4.89008 5.08764 5.15280 5.35855 5.50677 5.62768 5.75126 6.04940 6.18968 6.48536 6.62142 8.01140 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.010736 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.588450 B = 2607.444197 C = 3601.888611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.257 4.257 3 C 0.153 3.847 4 F -0.144 7.144 5 C -0.302 4.302 6 C 0.118 3.882 7 C -0.468 4.468 8 H 0.068 0.932 9 C 0.057 3.943 10 N -0.826 5.826 11 Si 0.956 3.044 12 H -0.259 1.259 13 H -0.265 1.265 14 H -0.256 1.256 15 C -0.293 4.293 16 C 0.164 3.836 17 O -0.321 6.321 18 C 0.403 3.597 19 F -0.214 7.214 20 F -0.215 7.215 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.300 0.700 26 H 0.119 0.881 27 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 -5.854 -1.493 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.259 4.259 3 C 0.134 3.866 4 F -0.123 7.123 5 C -0.322 4.322 6 C 0.115 3.885 7 C -0.496 4.496 8 H 0.086 0.914 9 C -0.161 4.161 10 N -0.450 5.450 11 Si 0.779 3.221 12 H -0.185 1.185 13 H -0.191 1.191 14 H -0.180 1.180 15 C -0.313 4.313 16 C 0.121 3.879 17 O -0.238 6.238 18 C 0.315 3.685 19 F -0.196 7.196 20 F -0.197 7.197 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.129 0.871 25 H 0.111 0.889 26 H 0.137 0.863 27 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -10.969 -5.744 -1.492 12.472 hybrid contribution 0.792 0.655 -0.230 1.053 sum -10.178 -5.089 -1.723 11.509 Atomic orbital electron populations 1.20279 0.88193 1.02649 1.02165 1.18774 0.97788 0.88355 1.21009 1.17001 0.88927 0.80529 1.00173 1.91379 1.80232 1.46700 1.93965 1.21037 0.92409 0.98725 1.20068 1.17273 0.93146 0.90510 0.87575 1.19474 0.90396 1.06615 1.33141 0.91405 1.26767 0.95327 0.97008 0.97020 1.69682 1.11247 1.28245 1.35869 0.85610 0.79086 0.78809 0.78562 1.18456 1.19093 1.18001 1.21475 0.92163 0.98912 1.18767 1.18057 0.89531 0.84533 0.95814 1.86466 1.36292 1.12730 1.88348 1.24408 0.82731 0.90584 0.70819 1.93068 1.77317 1.96576 1.52672 1.93064 1.76879 1.96557 1.53179 0.91539 0.91995 0.90601 0.87070 0.88883 0.86294 0.74004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.40 9.60 71.24 0.68 -1.71 15 2 C -0.26 -10.53 5.92 -19.53 -0.12 -10.65 15 3 C 0.15 6.87 7.22 22.31 0.16 7.03 15 4 F -0.14 -5.97 16.44 44.97 0.74 -5.23 15 5 C -0.30 -14.96 7.15 22.79 0.16 -14.79 15 6 C 0.12 6.15 5.10 -21.31 -0.11 6.05 15 7 C -0.47 -26.14 9.57 23.46 0.22 -25.92 15 8 H 0.07 4.03 8.06 -2.91 -0.02 4.01 15 9 C 0.06 3.01 5.40 85.25 0.46 3.47 15 10 N -0.83 -44.02 13.93 21.82 0.30 -43.72 15 11 Si 0.96 42.75 24.52 68.60 1.68 44.43 15 12 H -0.26 -11.17 6.71 99.48 0.67 -10.50 15 13 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 14 H -0.26 -11.91 6.86 99.48 0.68 -11.23 15 15 C -0.29 -13.88 7.99 22.83 0.18 -13.70 15 16 C 0.16 6.84 6.45 22.45 0.14 6.98 15 17 O -0.32 -10.46 9.45 -92.43 -0.87 -11.33 15 18 C 0.40 10.45 5.98 113.37 0.68 11.13 15 19 F -0.21 -6.81 15.57 44.97 0.70 -6.11 15 20 F -0.21 -6.82 15.58 44.97 0.70 -6.12 15 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.06 1.84 7.62 -2.39 -0.02 1.82 15 23 H 0.08 2.12 7.52 -2.38 -0.02 2.10 15 24 H 0.11 5.49 4.72 -2.91 -0.01 5.48 15 25 H 0.30 14.23 8.30 -92.71 -0.77 13.46 15 26 H 0.12 5.56 5.07 -2.92 -0.01 5.54 15 27 H 0.24 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -61.98 244.11 6.89 -55.09 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.16 Total: 5.09 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 2.47 Total: -32.11 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.30 Total: -43.72 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.87 Total: -11.33 kcal Atomic # 9 Polarization: -19.60 SS G_CDS: 2.14 Total: -17.46 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.68 Total: 44.43 kcal Total: -61.98 6.89 -55.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661959.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.516 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds