Wall clock time and date at job start Mon Mar 30 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36606 * 120.10349 * 2 1 4 4 F 1.35101 * 119.93005 * 0.03281 * 3 2 1 5 5 C 1.39524 * 120.14039 * 180.27721 * 3 2 1 6 6 O 1.35722 * 119.82547 * 179.75909 * 5 3 2 7 7 C 1.42892 * 116.99924 * 179.72204 * 6 5 3 8 8 F 1.39896 * 109.47428 * 59.99986 * 7 6 5 9 9 F 1.39906 * 109.47287 * 300.00000 * 7 6 5 10 10 C 1.39252 * 120.34896 * 359.47950 * 5 3 2 11 11 C 1.36459 * 120.20414 * 0.23776 * 10 5 3 12 12 C 1.40807 * 120.10434 * 179.73918 * 2 1 3 13 13 C 1.41200 * 120.16850 * 359.95920 * 12 2 1 14 14 H 1.08001 * 120.00002 * 333.67880 * 13 12 2 15 15 C 1.39885 * 120.00278 * 153.68245 * 13 12 2 16 16 N 1.30883 * 119.99649 * 343.89796 * 15 13 12 17 17 Si 1.86801 * 120.00407 * 163.89724 * 15 13 12 18 18 H 1.48504 * 109.47164 * 89.99732 * 17 15 13 19 19 H 1.48500 * 109.47109 * 210.00113 * 17 15 13 20 20 H 1.48504 * 109.46743 * 329.99861 * 17 15 13 21 21 H 1.08999 * 109.47355 * 270.26419 * 1 2 3 22 22 H 1.09006 * 109.46796 * 30.26257 * 1 2 3 23 23 H 1.09000 * 109.47068 * 150.25923 * 1 2 3 24 24 H 1.09004 * 109.46964 * 179.97438 * 7 6 5 25 25 H 1.07997 * 119.90092 * 180.25308 * 10 5 3 26 26 H 1.08001 * 120.07302 * 180.02562 * 11 10 5 27 27 H 0.97003 * 120.00248 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1922 1.1818 0.0000 4 9 1.5173 2.3522 0.0007 5 6 3.5874 1.1827 -0.0058 6 8 4.2616 2.3606 -0.0108 7 6 5.6889 2.2911 -0.0104 8 9 6.1227 1.6049 -1.1498 9 9 6.1226 1.6145 1.1348 10 6 4.2918 -0.0185 -0.0008 11 6 3.6217 -1.2072 0.0050 12 6 2.2133 -1.2181 0.0055 13 6 1.5131 -2.4443 0.0120 14 1 0.5175 -2.4955 0.4276 15 6 2.1088 -3.5928 -0.5198 16 7 3.1577 -3.4865 -1.2954 17 14 1.4075 -5.2781 -0.1230 18 1 0.3851 -5.6401 -1.1374 19 1 2.4991 -6.2848 -0.1391 20 1 0.7808 -5.2489 1.2230 21 1 -0.3634 0.0047 1.0276 22 1 -0.3633 0.8877 -0.5179 23 1 -0.3633 -0.8923 -0.5098 24 1 6.1017 3.2999 -0.0151 25 1 5.3717 -0.0093 -0.0012 26 1 4.1702 -2.1376 0.0094 27 1 3.5707 -4.2829 -1.6646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661961.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:19 Heat of formation + Delta-G solvation = -182.820717 kcal Electronic energy + Delta-G solvation = -17919.545082 eV Core-core repulsion = 14420.121832 eV Total energy + Delta-G solvation = -3499.423250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.80781 -47.77314 -46.81198 -38.56110 -36.76631 -33.52728 -31.39402 -29.19861 -26.75614 -25.54925 -24.36798 -21.26508 -20.54719 -18.04099 -17.84607 -17.36831 -17.14992 -15.70415 -15.29790 -15.03260 -14.72880 -14.43568 -13.73944 -13.46634 -13.21094 -12.86153 -12.83174 -12.58683 -12.30537 -12.16042 -11.81201 -11.69370 -11.34787 -11.17163 -10.87894 -10.74751 -10.11035 -10.04601 -9.60433 -9.21716 -7.52123 -7.22758 -6.92842 -4.50173 2.50915 2.64075 2.99889 3.00872 3.07266 3.34326 3.81324 4.00062 4.37024 4.80420 5.13069 5.37393 5.46131 5.99607 6.25477 6.26505 6.48852 6.57971 6.76363 6.84102 7.00777 7.10053 7.39232 7.57964 7.74966 7.84037 8.07474 8.38969 8.67174 8.71205 10.01246 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.008088 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.579445 B = 3461.122036 C = 4264.205003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.214 4.214 3 C 0.120 3.880 4 F -0.156 7.156 5 C -0.072 4.072 6 O -0.324 6.324 7 C 0.412 3.588 8 F -0.206 7.206 9 F -0.207 7.207 10 C -0.137 4.137 11 C -0.139 4.139 12 C 0.119 3.881 13 C -0.446 4.446 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.786 5.786 17 Si 0.913 3.087 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.259 1.259 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.165 0.835 25 H 0.111 0.889 26 H 0.128 0.872 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 4.297 1.549 5.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.217 4.217 3 C 0.100 3.900 4 F -0.135 7.135 5 C -0.115 4.115 6 O -0.243 6.243 7 C 0.321 3.679 8 F -0.188 7.188 9 F -0.189 7.189 10 C -0.156 4.156 11 C -0.159 4.159 12 C 0.116 3.884 13 C -0.475 4.475 14 H 0.104 0.896 15 C -0.145 4.145 16 N -0.411 5.411 17 Si 0.737 3.263 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.183 1.183 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.182 0.818 25 H 0.129 0.871 26 H 0.146 0.854 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.754 4.334 1.397 5.321 hybrid contribution 0.087 -0.811 0.015 0.816 sum 2.841 3.523 1.412 4.741 Atomic orbital electron populations 1.20298 0.91835 1.01348 1.00316 1.19328 0.95559 0.91005 1.15764 1.16266 0.85843 0.80737 1.07149 1.91327 1.80389 1.47186 1.94642 1.18274 0.89569 0.83740 1.19916 1.86363 1.16388 1.31048 1.90526 1.23062 0.80899 0.92067 0.71851 1.93065 1.89789 1.83331 1.52583 1.93056 1.89818 1.83774 1.52264 1.20717 0.98518 0.91930 1.04394 1.20984 0.94481 0.96342 1.04044 1.17322 0.91533 0.91269 0.88303 1.19549 1.02265 0.91947 1.33722 0.89595 1.25993 0.94201 1.01774 0.92572 1.69827 1.17868 1.32224 1.21136 0.86228 0.79468 0.80330 0.80315 1.19302 1.19961 1.18251 0.93446 0.93705 0.91319 0.81808 0.87132 0.85400 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.20 36.01 0.33 -1.37 15 2 C -0.21 -5.25 5.91 -104.24 -0.62 -5.87 15 3 C 0.12 2.93 7.21 -39.69 -0.29 2.64 15 4 F -0.16 -3.64 16.27 2.25 0.04 -3.61 15 5 C -0.07 -1.73 6.52 -38.73 -0.25 -1.98 15 6 O -0.32 -6.74 10.28 -18.87 -0.19 -6.94 15 7 C 0.41 6.66 5.98 101.05 0.60 7.27 15 8 F -0.21 -3.68 15.56 2.25 0.04 -3.64 15 9 F -0.21 -3.61 15.56 2.25 0.04 -3.58 15 10 C -0.14 -3.29 8.18 -39.85 -0.33 -3.61 15 11 C -0.14 -3.56 8.63 -39.24 -0.34 -3.90 15 12 C 0.12 3.07 5.56 -106.81 -0.59 2.47 15 13 C -0.45 -11.13 8.10 -37.84 -0.31 -11.44 15 14 H 0.09 2.03 6.89 -52.49 -0.36 1.67 15 15 C 0.07 1.75 5.16 -17.34 -0.09 1.66 15 16 N -0.79 -19.39 10.97 55.54 0.61 -18.78 15 17 Si 0.91 17.66 29.59 -169.99 -5.03 12.63 15 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 22 H 0.04 0.88 7.62 -51.93 -0.40 0.48 15 23 H 0.07 1.41 6.78 -51.93 -0.35 1.06 15 24 H 0.17 1.66 8.14 -51.93 -0.42 1.24 15 25 H 0.11 2.48 5.06 -52.49 -0.27 2.22 15 26 H 0.13 3.31 6.22 -52.49 -0.33 2.99 15 27 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 LS Contribution 247.13 15.07 3.72 3.72 Total: -1.00 -27.93 247.13 -4.34 -32.26 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.68 Total: 2.06 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.87 Total: -14.13 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.61 Total: -18.78 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.19 Total: -6.94 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 0.11 Total: -10.83 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.93 -4.34 -32.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661961.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.557 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds