Wall clock time and date at job start Mon Mar 30 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36606 * 120.10349 * 2 1 4 4 F 1.35101 * 119.93005 * 0.03281 * 3 2 1 5 5 C 1.39524 * 120.14039 * 180.27721 * 3 2 1 6 6 O 1.35722 * 119.82547 * 179.75909 * 5 3 2 7 7 C 1.42892 * 116.99924 * 179.72204 * 6 5 3 8 8 F 1.39896 * 109.47428 * 59.99986 * 7 6 5 9 9 F 1.39906 * 109.47287 * 300.00000 * 7 6 5 10 10 C 1.39252 * 120.34896 * 359.47950 * 5 3 2 11 11 C 1.36459 * 120.20414 * 0.23776 * 10 5 3 12 12 C 1.40807 * 120.10434 * 179.73918 * 2 1 3 13 13 C 1.41200 * 120.16850 * 359.95920 * 12 2 1 14 14 H 1.08001 * 120.00002 * 333.67880 * 13 12 2 15 15 C 1.39885 * 120.00278 * 153.68245 * 13 12 2 16 16 N 1.30883 * 119.99649 * 343.89796 * 15 13 12 17 17 Si 1.86801 * 120.00407 * 163.89724 * 15 13 12 18 18 H 1.48504 * 109.47164 * 89.99732 * 17 15 13 19 19 H 1.48500 * 109.47109 * 210.00113 * 17 15 13 20 20 H 1.48504 * 109.46743 * 329.99861 * 17 15 13 21 21 H 1.08999 * 109.47355 * 270.26419 * 1 2 3 22 22 H 1.09006 * 109.46796 * 30.26257 * 1 2 3 23 23 H 1.09000 * 109.47068 * 150.25923 * 1 2 3 24 24 H 1.09004 * 109.46964 * 179.97438 * 7 6 5 25 25 H 1.07997 * 119.90092 * 180.25308 * 10 5 3 26 26 H 1.08001 * 120.07302 * 180.02562 * 11 10 5 27 27 H 0.97003 * 120.00248 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1922 1.1818 0.0000 4 9 1.5173 2.3522 0.0007 5 6 3.5874 1.1827 -0.0058 6 8 4.2616 2.3606 -0.0108 7 6 5.6889 2.2911 -0.0104 8 9 6.1227 1.6049 -1.1498 9 9 6.1226 1.6145 1.1348 10 6 4.2918 -0.0185 -0.0008 11 6 3.6217 -1.2072 0.0050 12 6 2.2133 -1.2181 0.0055 13 6 1.5131 -2.4443 0.0120 14 1 0.5175 -2.4955 0.4276 15 6 2.1088 -3.5928 -0.5198 16 7 3.1577 -3.4865 -1.2954 17 14 1.4075 -5.2781 -0.1230 18 1 0.3851 -5.6401 -1.1374 19 1 2.4991 -6.2848 -0.1391 20 1 0.7808 -5.2489 1.2230 21 1 -0.3634 0.0047 1.0276 22 1 -0.3633 0.8877 -0.5179 23 1 -0.3633 -0.8923 -0.5098 24 1 6.1017 3.2999 -0.0151 25 1 5.3717 -0.0093 -0.0012 26 1 4.1702 -2.1376 0.0094 27 1 3.5707 -4.2829 -1.6646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661961.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:19 Heat of formation + Delta-G solvation = -198.412270 kcal Electronic energy + Delta-G solvation = -17920.221182 eV Core-core repulsion = 14420.121832 eV Total energy + Delta-G solvation = -3500.099351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.16866 -49.63073 -48.18025 -40.31234 -38.50122 -35.34272 -33.20015 -31.04375 -28.49121 -27.15701 -26.03555 -23.11037 -22.29050 -19.65527 -19.56840 -18.75504 -18.74241 -17.38565 -17.15378 -16.70807 -16.54791 -16.13768 -15.18021 -15.16543 -14.62310 -14.49716 -14.42401 -14.28891 -14.00573 -13.84484 -13.52662 -13.23902 -13.00048 -12.76230 -12.67081 -12.31850 -11.92505 -11.79742 -11.40156 -11.00304 -9.40068 -9.10892 -8.71641 -6.38727 0.67747 0.72164 1.42033 1.48304 1.57265 1.94840 2.19726 2.55621 2.68563 3.44726 3.58320 3.66425 3.83827 4.15464 4.46120 4.54944 4.66270 4.90103 4.96508 5.09841 5.23158 5.28426 5.53032 5.70218 5.90116 5.95217 6.24289 6.51891 6.80757 6.83327 8.25373 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.008088 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.579445 B = 3461.122036 C = 4264.205003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.226 4.226 3 C 0.101 3.899 4 F -0.151 7.151 5 C -0.072 4.072 6 O -0.335 6.335 7 C 0.404 3.596 8 F -0.217 7.217 9 F -0.216 7.216 10 C -0.140 4.140 11 C -0.160 4.160 12 C 0.091 3.909 13 C -0.470 4.470 14 H 0.093 0.907 15 C 0.035 3.965 16 N -0.818 5.818 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.255 1.255 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.235 0.765 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 4.322 1.784 5.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.228 4.228 3 C 0.081 3.919 4 F -0.130 7.130 5 C -0.115 4.115 6 O -0.254 6.254 7 C 0.315 3.685 8 F -0.199 7.199 9 F -0.198 7.198 10 C -0.158 4.158 11 C -0.180 4.180 12 C 0.088 3.912 13 C -0.498 4.498 14 H 0.111 0.889 15 C -0.181 4.181 16 N -0.443 5.443 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.179 1.179 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.251 0.749 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.562 4.383 1.631 5.332 hybrid contribution 0.227 -0.721 -0.075 0.760 sum 2.789 3.661 1.555 4.858 Atomic orbital electron populations 1.20311 0.89670 1.01896 1.01464 1.19738 0.97411 0.90710 1.14935 1.16471 0.86504 0.81041 1.07834 1.91326 1.80280 1.46756 1.94659 1.18364 0.89871 0.84663 1.18604 1.86350 1.19047 1.29612 1.90357 1.24198 0.78788 0.94649 0.70859 1.93040 1.89629 1.83961 1.53275 1.93036 1.89618 1.84337 1.52761 1.20825 0.99071 0.91755 1.04194 1.20995 0.94843 0.96478 1.05644 1.17658 0.91920 0.92351 0.89228 1.19826 1.02886 0.92521 1.34529 0.88888 1.26867 0.94279 1.05289 0.91713 1.69877 1.18966 1.33733 1.21683 0.85117 0.78811 0.75230 0.80129 1.18546 1.19314 1.17872 0.91886 0.92549 0.91274 0.74937 0.86067 0.86544 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.16 9.20 71.24 0.66 -2.50 15 2 C -0.23 -11.07 5.91 -19.62 -0.12 -11.19 15 3 C 0.10 4.93 7.21 22.20 0.16 5.09 15 4 F -0.15 -6.91 16.27 44.97 0.73 -6.18 15 5 C -0.07 -3.41 6.52 22.82 0.15 -3.26 15 6 O -0.33 -13.40 10.28 -90.45 -0.93 -14.33 15 7 C 0.40 12.11 5.98 113.37 0.68 12.78 15 8 F -0.22 -7.43 15.56 44.97 0.70 -6.73 15 9 F -0.22 -7.17 15.56 44.97 0.70 -6.47 15 10 C -0.14 -6.76 8.18 22.10 0.18 -6.58 15 11 C -0.16 -8.37 8.63 22.49 0.19 -8.18 15 12 C 0.09 4.79 5.56 -21.28 -0.12 4.67 15 13 C -0.47 -23.52 8.10 23.40 0.19 -23.33 15 14 H 0.09 4.37 6.89 -2.91 -0.02 4.35 15 15 C 0.03 1.65 5.16 85.23 0.44 2.09 15 16 N -0.82 -40.66 10.97 21.82 0.24 -40.42 15 17 Si 0.99 35.58 29.59 68.60 2.03 37.61 15 18 H -0.26 -9.07 7.11 99.48 0.71 -8.36 15 19 H -0.27 -9.33 7.11 99.48 0.71 -8.63 15 20 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 21 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.06 2.14 7.62 -2.38 -0.02 2.12 15 23 H 0.07 2.80 6.78 -2.39 -0.02 2.78 15 24 H 0.24 3.68 8.14 -2.38 -0.02 3.66 15 25 H 0.12 5.46 5.06 -2.91 -0.01 5.45 15 26 H 0.12 6.24 6.22 -2.91 -0.02 6.22 15 27 H 0.29 13.10 8.30 -92.71 -0.77 12.33 15 Total: -1.00 -60.06 247.13 7.11 -52.95 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.23 Total: 13.99 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 2.41 Total: -30.41 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.24 Total: -40.42 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.93 Total: -14.33 kcal Atomic # 9 Polarization: -21.52 SS G_CDS: 2.13 Total: -19.39 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -60.06 7.11 -52.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661961.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.464 kcal (2) G-P(sol) polarization free energy of solvation -60.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds