Wall clock time and date at job start Mon Mar 30 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38702 * 119.81726 * 2 1 4 4 C 1.38363 * 120.63156 * 180.02562 * 3 2 1 5 5 C 1.38334 * 120.24385 * 0.04494 * 4 3 2 6 6 O 1.35669 * 120.18870 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99704 * 359.97438 * 6 5 4 8 8 F 1.39905 * 109.47185 * 60.00599 * 7 6 5 9 9 F 1.39896 * 109.47241 * 300.00117 * 7 6 5 10 10 C 1.41284 * 119.62363 * 0.22928 * 5 4 3 11 11 C 1.41092 * 120.30531 * 179.75102 * 10 5 4 12 12 H 1.07992 * 120.00169 * 36.56467 * 11 10 5 13 13 C 1.39921 * 119.99669 * 216.56739 * 11 10 5 14 14 N 1.30892 * 120.00278 * 19.71738 * 13 11 10 15 15 Si 1.86799 * 120.00049 * 199.71828 * 13 11 10 16 16 H 1.48505 * 109.47032 * 60.00190 * 15 13 11 17 17 H 1.48499 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47145 * 300.00160 * 15 13 11 19 19 C 1.37798 * 119.81166 * 180.02562 * 2 1 3 20 20 F 1.35101 * 120.13257 * 359.97438 * 19 2 1 21 21 H 1.09002 * 109.47376 * 89.99776 * 1 2 3 22 22 H 1.09000 * 109.47385 * 210.00207 * 1 2 3 23 23 H 1.09007 * 109.46983 * 329.99803 * 1 2 3 24 24 H 1.07997 * 119.68411 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.87964 * 180.02562 * 4 3 2 26 26 H 1.09006 * 109.46642 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00617 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.2034 0.0000 4 6 3.5801 1.2231 -0.0005 5 6 4.2938 0.0380 -0.0020 6 8 5.6503 0.0586 -0.0031 7 6 6.2796 1.3416 -0.0031 8 9 5.8938 2.0503 1.1398 9 9 5.8920 2.0511 -1.1448 10 6 3.6020 -1.1938 -0.0079 11 6 4.3155 -2.4110 -0.0148 12 1 5.2370 -2.4999 0.5412 13 6 3.8290 -3.5029 -0.7420 14 7 2.9606 -3.3146 -1.7031 15 14 4.4189 -5.2295 -0.3414 16 1 4.0769 -5.5552 1.0666 17 1 3.7574 -6.2015 -1.2485 18 1 5.8908 -5.3043 -0.5233 19 6 2.1920 -1.1956 -0.0005 20 9 1.5154 -2.3650 -0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6485 2.1339 0.0004 25 1 4.1048 2.1670 -0.0001 26 1 7.3623 1.2151 -0.0045 27 1 2.6236 -4.0715 -2.2075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661963.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:05 Heat of formation + Delta-G solvation = -175.668940 kcal Electronic energy + Delta-G solvation = -18161.703562 eV Core-core repulsion = 14662.590436 eV Total energy + Delta-G solvation = -3499.113126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.74983 -47.03645 -46.75416 -38.55993 -36.18372 -33.81382 -31.04531 -29.59678 -26.31138 -25.51578 -24.36418 -21.43535 -20.29632 -18.12463 -17.53374 -17.29691 -17.12965 -15.63654 -15.13495 -14.62033 -14.07387 -13.98605 -13.75685 -13.68393 -13.16295 -12.84940 -12.83697 -12.65002 -12.38792 -11.99431 -11.73892 -11.65503 -11.24407 -11.10540 -10.96523 -10.60769 -10.24487 -9.96206 -9.64118 -9.05743 -7.35153 -7.08674 -6.79650 -4.40334 2.54604 2.63754 3.09782 3.11924 3.17091 3.47491 3.97087 4.08127 4.51585 4.89286 5.12445 5.35278 5.78050 5.90668 5.96262 6.13800 6.31567 6.36334 6.55214 6.73041 7.08289 7.16297 7.36951 7.41186 7.67487 7.98973 8.06174 8.38847 8.70017 8.82544 10.19880 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.010669 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.755616 B = 2623.736334 C = 3687.192808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.121 4.121 3 C -0.182 4.182 4 C -0.165 4.165 5 C 0.009 3.991 6 O -0.304 6.304 7 C 0.407 3.593 8 F -0.210 7.210 9 F -0.208 7.208 10 C 0.086 3.914 11 C -0.457 4.457 12 H 0.087 0.913 13 C 0.077 3.923 14 N -0.779 5.779 15 Si 0.912 3.088 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.266 1.266 19 C 0.059 3.941 20 F -0.135 7.135 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.166 0.834 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 4.697 1.930 5.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.202 4.202 4 C -0.184 4.184 5 C -0.034 4.034 6 O -0.222 6.222 7 C 0.315 3.685 8 F -0.192 7.192 9 F -0.190 7.190 10 C 0.082 3.918 11 C -0.486 4.486 12 H 0.105 0.895 13 C -0.143 4.143 14 N -0.403 5.403 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.190 1.190 19 C 0.038 3.962 20 F -0.113 7.113 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.182 0.818 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.616 4.392 1.728 5.396 hybrid contribution 0.049 -0.567 -0.037 0.570 sum 2.665 3.825 1.691 4.959 Atomic orbital electron populations 1.20528 0.92511 1.01316 1.01200 1.19452 0.95094 0.92497 1.05187 1.19826 0.92697 0.95470 1.12199 1.20908 0.95323 0.95477 1.06684 1.18636 0.79463 0.94025 1.11233 1.86485 1.20404 1.25904 1.89403 1.23209 0.97091 0.76542 0.71636 1.93042 1.93431 1.80187 1.52565 1.93046 1.93363 1.80083 1.52556 1.16778 0.89781 0.91017 0.94224 1.19162 1.08449 0.94238 1.26732 0.89530 1.25806 0.93848 1.01367 0.93237 1.69780 1.23030 1.34128 1.13329 0.86292 0.79592 0.80807 0.79654 1.18774 1.20347 1.19035 1.17144 0.88936 0.79906 1.10204 1.91322 1.79360 1.46759 1.93886 0.92339 0.92384 0.92666 0.87823 0.87352 0.81792 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.82 36.00 0.35 -1.53 15 2 C -0.12 -2.83 5.88 -104.61 -0.61 -3.44 15 3 C -0.18 -4.05 9.68 -39.36 -0.38 -4.44 15 4 C -0.16 -3.78 8.25 -39.50 -0.33 -4.10 15 5 C 0.01 0.23 6.51 -38.39 -0.25 -0.02 15 6 O -0.30 -6.72 9.86 -18.71 -0.18 -6.91 15 7 C 0.41 6.76 5.98 101.05 0.60 7.36 15 8 F -0.21 -3.64 15.58 2.25 0.04 -3.61 15 9 F -0.21 -3.73 15.59 2.25 0.04 -3.69 15 10 C 0.09 2.33 5.41 -106.61 -0.58 1.75 15 11 C -0.46 -12.42 8.48 -37.87 -0.32 -12.74 15 12 H 0.09 2.27 7.88 -52.49 -0.41 1.86 15 13 C 0.08 2.01 4.51 -17.32 -0.08 1.93 15 14 N -0.78 -20.97 11.13 55.55 0.62 -20.35 15 15 Si 0.91 19.39 29.60 -169.99 -5.03 14.36 15 16 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 17 H -0.28 -5.75 7.11 56.52 0.40 -5.34 15 18 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 19 C 0.06 1.56 6.62 -38.70 -0.26 1.30 15 20 F -0.13 -3.63 13.47 2.25 0.03 -3.60 15 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.06 1.09 7.62 -51.93 -0.40 0.70 15 23 H 0.05 0.90 8.08 -51.92 -0.42 0.48 15 24 H 0.10 1.99 8.06 -52.49 -0.42 1.57 15 25 H 0.11 2.27 5.08 -52.49 -0.27 2.01 15 26 H 0.17 1.79 8.14 -51.93 -0.42 1.37 15 27 H 0.28 7.01 8.30 -40.82 -0.34 6.67 15 LS Contribution 248.99 15.07 3.75 3.75 Total: -1.00 -29.77 248.99 -4.49 -34.26 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -1.90 Total: -0.30 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.85 Total: -13.92 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.62 Total: -20.35 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.18 Total: -6.91 kcal Atomic # 9 Polarization: -11.00 SS G_CDS: 0.10 Total: -10.90 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.77 -4.49 -34.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661963.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.404 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds