Wall clock time and date at job start Mon Mar 30 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38702 * 119.81726 * 2 1 4 4 C 1.38363 * 120.63156 * 180.02562 * 3 2 1 5 5 C 1.38334 * 120.24385 * 0.04494 * 4 3 2 6 6 O 1.35669 * 120.18870 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99704 * 359.97438 * 6 5 4 8 8 F 1.39905 * 109.47185 * 60.00599 * 7 6 5 9 9 F 1.39896 * 109.47241 * 300.00117 * 7 6 5 10 10 C 1.41284 * 119.62363 * 0.22928 * 5 4 3 11 11 C 1.41092 * 120.30531 * 179.75102 * 10 5 4 12 12 H 1.07992 * 120.00169 * 36.56467 * 11 10 5 13 13 C 1.39921 * 119.99669 * 216.56739 * 11 10 5 14 14 N 1.30892 * 120.00278 * 19.71738 * 13 11 10 15 15 Si 1.86799 * 120.00049 * 199.71828 * 13 11 10 16 16 H 1.48505 * 109.47032 * 60.00190 * 15 13 11 17 17 H 1.48499 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47145 * 300.00160 * 15 13 11 19 19 C 1.37798 * 119.81166 * 180.02562 * 2 1 3 20 20 F 1.35101 * 120.13257 * 359.97438 * 19 2 1 21 21 H 1.09002 * 109.47376 * 89.99776 * 1 2 3 22 22 H 1.09000 * 109.47385 * 210.00207 * 1 2 3 23 23 H 1.09007 * 109.46983 * 329.99803 * 1 2 3 24 24 H 1.07997 * 119.68411 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.87964 * 180.02562 * 4 3 2 26 26 H 1.09006 * 109.46642 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00617 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.2034 0.0000 4 6 3.5801 1.2231 -0.0005 5 6 4.2938 0.0380 -0.0020 6 8 5.6503 0.0586 -0.0031 7 6 6.2796 1.3416 -0.0031 8 9 5.8938 2.0503 1.1398 9 9 5.8920 2.0511 -1.1448 10 6 3.6020 -1.1938 -0.0079 11 6 4.3155 -2.4110 -0.0148 12 1 5.2370 -2.4999 0.5412 13 6 3.8290 -3.5029 -0.7420 14 7 2.9606 -3.3146 -1.7031 15 14 4.4189 -5.2295 -0.3414 16 1 4.0769 -5.5552 1.0666 17 1 3.7574 -6.2015 -1.2485 18 1 5.8908 -5.3043 -0.5233 19 6 2.1920 -1.1956 -0.0005 20 9 1.5154 -2.3650 -0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6485 2.1339 0.0004 25 1 4.1048 2.1670 -0.0001 26 1 7.3623 1.2151 -0.0045 27 1 2.6236 -4.0715 -2.2075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661963.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:05 Heat of formation + Delta-G solvation = -193.390183 kcal Electronic energy + Delta-G solvation = -18162.472013 eV Core-core repulsion = 14662.590436 eV Total energy + Delta-G solvation = -3499.881577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.12764 -49.03228 -48.13247 -40.31597 -37.92115 -35.70015 -32.79931 -31.44827 -27.86583 -27.39079 -25.93344 -23.27836 -22.04007 -19.80296 -19.18809 -18.87469 -18.69463 -17.35052 -16.94736 -16.44976 -15.95286 -15.69572 -15.47172 -15.18550 -14.61442 -14.59206 -14.43334 -14.28897 -13.95742 -13.57288 -13.44231 -13.29879 -13.04819 -12.81755 -12.67603 -12.24922 -11.97198 -11.72059 -11.47717 -10.94477 -9.28168 -8.91788 -8.68352 -6.39056 0.68929 0.76774 1.36192 1.46528 1.49433 2.05082 2.21228 2.64391 2.70826 3.30546 3.70584 3.90201 4.04943 4.14147 4.28894 4.46405 4.65845 4.84456 4.88181 5.10530 5.20666 5.35227 5.53359 5.56428 5.82842 6.11581 6.24037 6.44372 6.78502 6.90945 8.32722 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.010669 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.755616 B = 2623.736334 C = 3687.192808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.130 4.130 3 C -0.173 4.173 4 C -0.171 4.171 5 C 0.003 3.997 6 O -0.326 6.326 7 C 0.402 3.598 8 F -0.214 7.214 9 F -0.216 7.216 10 C 0.046 3.954 11 C -0.493 4.493 12 H 0.081 0.919 13 C 0.036 3.964 14 N -0.818 5.818 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.255 1.255 19 C 0.026 3.974 20 F -0.147 7.147 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.142 0.858 25 H 0.129 0.871 26 H 0.228 0.772 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 5.697 2.186 6.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.192 4.192 4 C -0.190 4.190 5 C -0.040 4.040 6 O -0.244 6.244 7 C 0.312 3.688 8 F -0.196 7.196 9 F -0.198 7.198 10 C 0.042 3.958 11 C -0.522 4.522 12 H 0.099 0.901 13 C -0.180 4.180 14 N -0.443 5.443 15 Si 0.800 3.200 16 H -0.188 1.188 17 H -0.192 1.192 18 H -0.179 1.179 19 C 0.005 3.995 20 F -0.126 7.126 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.107 0.893 24 H 0.160 0.840 25 H 0.146 0.854 26 H 0.244 0.756 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.866 5.421 1.988 6.446 hybrid contribution -0.009 -0.649 -0.098 0.656 sum 2.856 4.772 1.890 5.873 Atomic orbital electron populations 1.20575 0.89513 1.02821 1.02219 1.19949 0.97506 0.91729 1.03931 1.20358 0.92748 0.96581 1.09554 1.21231 0.95949 0.95633 1.06214 1.18841 0.80946 0.93960 1.10258 1.86448 1.19114 1.29561 1.89300 1.24186 0.99089 0.74593 0.70916 1.93028 1.93664 1.80081 1.52793 1.93026 1.93625 1.80071 1.53043 1.17237 0.90765 0.92298 0.95461 1.19327 1.09046 0.95579 1.28230 0.90143 1.26643 0.93803 1.05042 0.92487 1.69832 1.24715 1.35300 1.14443 0.85280 0.79601 0.75793 0.79299 1.18778 1.19239 1.17885 1.17586 0.89277 0.80664 1.11983 1.91269 1.79496 1.47625 1.94189 0.91425 0.92800 0.89265 0.84009 0.85376 0.75604 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 9.82 71.23 0.70 -2.71 15 2 C -0.13 -5.94 5.88 -19.86 -0.12 -6.06 15 3 C -0.17 -7.30 9.68 22.41 0.22 -7.09 15 4 C -0.17 -7.59 8.25 22.32 0.18 -7.41 15 5 C 0.00 0.16 6.51 23.04 0.15 0.31 15 6 O -0.33 -14.26 9.86 -89.85 -0.89 -15.14 15 7 C 0.40 12.44 5.98 113.37 0.68 13.12 15 8 F -0.21 -6.92 15.58 44.97 0.70 -6.22 15 9 F -0.22 -7.26 15.59 44.97 0.70 -6.56 15 10 C 0.05 2.55 5.41 -21.15 -0.11 2.43 15 11 C -0.49 -27.65 8.48 23.38 0.20 -27.45 15 12 H 0.08 4.40 7.88 -2.91 -0.02 4.37 15 13 C 0.04 1.92 4.51 85.24 0.38 2.31 15 14 N -0.82 -45.26 11.13 21.83 0.24 -45.02 15 15 Si 0.98 40.38 29.60 68.60 2.03 42.41 15 16 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 17 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 18 H -0.25 -9.93 7.11 99.48 0.71 -9.23 15 19 C 0.03 1.38 6.62 22.84 0.15 1.53 15 20 F -0.15 -8.17 13.47 44.97 0.61 -7.57 15 21 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.05 1.97 7.62 -2.39 -0.02 1.95 15 23 H 0.09 2.58 8.08 -2.38 -0.02 2.56 15 24 H 0.14 4.84 8.06 -2.91 -0.02 4.81 15 25 H 0.13 5.07 5.08 -2.91 -0.01 5.06 15 26 H 0.23 4.09 8.14 -2.38 -0.02 4.07 15 27 H 0.29 14.60 8.30 -92.71 -0.77 13.83 15 Total: -1.00 -66.19 248.99 7.04 -59.15 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.21 Total: 9.96 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 2.43 Total: -31.01 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.24 Total: -45.02 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.89 Total: -15.14 kcal Atomic # 9 Polarization: -22.36 SS G_CDS: 2.01 Total: -20.35 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -66.19 7.04 -59.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661963.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.241 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds