Wall clock time and date at job start Mon Mar 30 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36498 * 120.01624 * 2 1 4 4 C 1.38787 * 120.55871 * 180.02562 * 3 2 1 5 5 C 1.38492 * 120.56450 * 359.97438 * 4 3 2 6 6 F 1.35106 * 119.99541 * 180.02562 * 5 4 3 7 7 C 1.38616 * 120.01079 * 359.74691 * 5 4 3 8 8 O 1.35705 * 120.27594 * 180.25464 * 7 5 4 9 9 C 1.42896 * 116.99750 * 275.73623 * 8 7 5 10 10 F 1.39902 * 109.46862 * 299.99694 * 9 8 7 11 11 F 1.39897 * 109.47401 * 59.99471 * 9 8 7 12 12 C 1.40725 * 120.01494 * 180.02562 * 2 1 3 13 13 C 1.41169 * 120.27866 * 359.95702 * 12 2 1 14 14 H 1.07993 * 120.00368 * 42.99711 * 13 12 2 15 15 C 1.39929 * 119.99788 * 222.99807 * 13 12 2 16 16 N 1.30866 * 119.99926 * 22.83117 * 15 13 12 17 17 Si 1.86801 * 119.99960 * 202.55544 * 15 13 12 18 18 H 1.48496 * 109.47400 * 180.27549 * 17 15 13 19 19 H 1.48506 * 109.46968 * 300.27664 * 17 15 13 20 20 H 1.48497 * 109.47302 * 60.27389 * 17 15 13 21 21 H 1.09001 * 109.47212 * 269.97487 * 1 2 3 22 22 H 1.09005 * 109.47358 * 29.97761 * 1 2 3 23 23 H 1.08998 * 109.47091 * 149.97413 * 1 2 3 24 24 H 1.08002 * 119.72018 * 0.02562 * 3 2 1 25 25 H 1.08007 * 119.71954 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47429 * 179.97438 * 9 8 7 27 27 H 0.97001 * 120.00137 * 5.52672 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.1819 0.0000 4 6 3.5776 1.1951 -0.0005 5 6 4.2931 0.0093 -0.0005 6 9 5.6439 0.0355 -0.0005 7 6 3.6236 -1.2045 0.0053 8 8 4.3193 -2.3696 0.0105 9 6 4.7608 -2.8672 -1.2542 10 9 3.6533 -3.0943 -2.0782 11 9 5.6050 -1.9279 -1.8560 12 6 2.2109 -1.2185 -0.0005 13 6 1.5113 -2.4447 -0.0002 14 1 0.6492 -2.5747 -0.6374 15 6 1.9350 -3.4916 0.8259 16 7 2.6531 -3.2362 1.8897 17 14 1.4691 -5.2532 0.4145 18 1 2.0310 -6.1667 1.4415 19 1 -0.0103 -5.3819 0.3937 20 1 2.0158 -5.6113 -0.9189 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6455 2.1148 0.0004 25 1 4.1041 2.1381 -0.0001 26 1 5.3030 -3.8014 -1.1079 27 1 2.8243 -2.3176 2.1503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661995.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:48 Heat of formation + Delta-G solvation = -203.796217 kcal Electronic energy + Delta-G solvation = -18752.885484 eV Core-core repulsion = 15252.552668 eV Total energy + Delta-G solvation = -3500.332816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.93644 -49.66803 -48.00194 -40.34539 -38.03133 -35.58119 -32.84691 -31.07175 -27.93971 -26.83817 -26.19241 -23.18843 -22.08281 -19.97670 -19.22493 -18.90600 -18.64586 -17.64561 -17.26804 -16.49227 -16.09243 -15.72620 -15.34291 -14.99248 -14.88545 -14.49869 -14.44021 -14.36863 -13.98739 -13.65889 -13.30044 -13.15376 -12.75714 -12.46033 -12.34277 -12.08648 -11.97952 -11.79830 -11.16091 -10.70290 -9.49035 -9.30812 -9.05130 -6.46922 0.39103 0.65629 1.53195 1.61063 1.79988 2.33369 2.37533 2.71897 2.83875 3.29604 3.55729 3.81812 3.94789 4.19354 4.42846 4.56035 4.62535 4.95877 4.99642 5.05311 5.34676 5.46611 5.50831 5.77371 5.80321 5.99489 6.14388 6.36064 6.75363 6.94468 8.16034 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.014133 C = 0.009946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.128411 B = 1980.639698 C = 2814.461120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.192 4.192 3 C -0.061 4.061 4 C -0.264 4.264 5 C 0.094 3.906 6 F -0.156 7.156 7 C -0.093 4.093 8 O -0.312 6.312 9 C 0.383 3.617 10 F -0.212 7.212 11 F -0.223 7.223 12 C 0.092 3.908 13 C -0.526 4.526 14 H 0.082 0.918 15 C 0.019 3.981 16 N -0.795 5.795 17 Si 1.096 2.904 18 H -0.273 1.273 19 H -0.257 1.257 20 H -0.264 1.264 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.146 0.854 25 H 0.136 0.864 26 H 0.199 0.801 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 0.419 -3.682 3.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.193 4.193 3 C -0.079 4.079 4 C -0.284 4.284 5 C 0.075 3.925 6 F -0.134 7.134 7 C -0.138 4.138 8 O -0.230 6.230 9 C 0.294 3.706 10 F -0.194 7.194 11 F -0.205 7.205 12 C 0.088 3.912 13 C -0.553 4.553 14 H 0.100 0.900 15 C -0.200 4.200 16 N -0.416 5.416 17 Si 0.914 3.086 18 H -0.198 1.198 19 H -0.181 1.181 20 H -0.188 1.188 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.164 0.836 25 H 0.153 0.847 26 H 0.215 0.785 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.524 -1.225 -3.029 3.309 hybrid contribution 0.453 1.876 -0.677 2.045 sum -0.071 0.651 -3.707 3.764 Atomic orbital electron populations 1.20409 0.90013 1.01840 1.01258 1.20222 0.97352 0.92266 1.09437 1.20581 0.92548 0.98016 0.96779 1.20668 0.95144 0.95332 1.17236 1.18309 0.75851 0.95217 1.03153 1.91355 1.30346 1.97576 1.94172 1.18768 0.91267 0.82654 1.21138 1.86692 1.71062 1.38439 1.26841 1.24262 0.78416 0.91218 0.76740 1.93026 1.57036 1.94808 1.74523 1.92998 1.71920 1.70581 1.85028 1.17913 0.89393 0.94741 0.89133 1.20390 1.13943 0.97531 1.23482 0.89998 1.27952 0.91337 1.08965 0.91702 1.70493 1.25997 1.24913 1.20214 0.83284 0.78229 0.69703 0.77393 1.19786 1.18133 1.18831 0.92487 0.90778 0.92725 0.83612 0.84651 0.78455 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.86 9.61 71.23 0.68 -2.18 15 2 C -0.19 -8.44 5.90 -19.66 -0.12 -8.55 15 3 C -0.06 -2.42 9.60 21.99 0.21 -2.21 15 4 C -0.26 -11.17 10.02 22.46 0.23 -10.94 15 5 C 0.09 4.57 6.91 22.42 0.15 4.73 15 6 F -0.16 -7.44 16.15 44.97 0.73 -6.72 15 7 C -0.09 -4.77 4.39 23.11 0.10 -4.67 15 8 O -0.31 -15.51 7.64 -90.25 -0.69 -16.20 15 9 C 0.38 15.93 6.35 113.37 0.72 16.65 15 10 F -0.21 -9.45 16.61 44.97 0.75 -8.70 15 11 F -0.22 -9.53 15.93 44.97 0.72 -8.82 15 12 C 0.09 4.63 4.83 -21.21 -0.10 4.53 15 13 C -0.53 -26.41 7.30 23.40 0.17 -26.24 15 14 H 0.08 4.02 6.87 -2.91 -0.02 4.00 15 15 C 0.02 0.94 4.31 85.25 0.37 1.31 15 16 N -0.79 -42.19 12.29 21.83 0.27 -41.92 15 17 Si 1.10 42.19 29.99 68.60 2.06 44.25 15 18 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 20 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.07 2.19 8.08 -2.38 -0.02 2.17 15 23 H 0.05 2.06 6.51 -2.39 -0.02 2.05 15 24 H 0.15 4.51 8.06 -2.91 -0.02 4.49 15 25 H 0.14 4.91 8.06 -2.91 -0.02 4.89 15 26 H 0.20 6.12 8.14 -2.39 -0.02 6.10 15 27 H 0.28 15.55 7.20 -92.71 -0.67 14.89 15 Total: -1.00 -59.72 250.22 7.56 -52.16 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.31 Total: 13.52 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 2.42 Total: -27.58 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.27 Total: -41.92 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.69 Total: -16.20 kcal Atomic # 9 Polarization: -26.42 SS G_CDS: 2.19 Total: -24.23 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.06 Total: 44.25 kcal Total: -59.72 7.56 -52.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661995.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.633 kcal (2) G-P(sol) polarization free energy of solvation -59.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds