Wall clock time and date at job start Mon Mar 30 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38414 * 119.88005 * 2 1 4 4 C 1.38654 * 120.62621 * 180.02562 * 3 2 1 5 5 C 1.37827 * 120.37495 * 0.24888 * 4 3 2 6 6 F 1.35098 * 120.13323 * 179.72446 * 5 4 3 7 7 C 1.40968 * 119.73940 * 359.52383 * 5 4 3 8 8 C 1.41087 * 120.30331 * 180.22915 * 7 5 4 9 9 H 1.08006 * 119.99739 * 136.55181 * 8 7 5 10 10 C 1.39919 * 120.00357 * 316.55175 * 8 7 5 11 11 N 1.30889 * 119.99914 * 160.48244 * 10 8 7 12 12 Si 1.86797 * 119.99715 * 340.48434 * 10 8 7 13 13 H 1.48504 * 109.47099 * 95.27719 * 12 10 8 14 14 H 1.48500 * 109.46871 * 215.27606 * 12 10 8 15 15 H 1.48493 * 109.47573 * 335.27493 * 12 10 8 16 16 C 1.38289 * 119.87377 * 180.02562 * 2 1 3 17 17 O 1.35673 * 120.18866 * 0.02562 * 16 2 1 18 18 C 1.42896 * 116.99713 * 90.00341 * 17 16 2 19 19 F 1.39893 * 109.47358 * 299.99614 * 18 17 16 20 20 F 1.39901 * 109.47457 * 60.00245 * 18 17 16 21 21 H 1.08999 * 109.47139 * 89.99839 * 1 2 3 22 22 H 1.08999 * 109.47275 * 210.00203 * 1 2 3 23 23 H 1.09000 * 109.47010 * 330.00018 * 1 2 3 24 24 H 1.08000 * 119.68175 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.81050 * 179.97438 * 4 3 2 26 26 H 0.97007 * 119.99595 * 180.02562 * 11 10 8 27 27 H 1.09006 * 109.46642 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2001 0.0000 4 6 3.5830 1.2182 -0.0005 5 6 4.2953 0.0383 -0.0062 6 9 5.6461 0.0616 -0.0124 7 6 3.6089 -1.1930 -0.0014 8 6 4.3263 -2.4079 -0.0023 9 1 4.0186 -3.2171 0.6436 10 6 5.4361 -2.5645 -0.8398 11 7 6.3185 -3.4982 -0.5892 12 14 5.6584 -1.4411 -2.3155 13 1 6.5484 -0.3106 -1.9474 14 1 6.2669 -2.2065 -3.4331 15 1 4.3368 -0.9129 -2.7392 16 6 2.1958 -1.1991 -0.0005 17 8 1.5187 -2.3748 -0.0016 18 6 1.1955 -2.9361 -1.2753 19 9 0.3936 -2.0400 -1.9900 20 9 2.3733 -3.1800 -1.9899 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6494 2.1313 0.0004 25 1 4.1076 2.1622 -0.0009 26 1 7.0881 -3.6066 -1.1697 27 1 0.6566 -3.8729 -1.1333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575662009.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:28 Heat of formation + Delta-G solvation = -193.637909 kcal Electronic energy + Delta-G solvation = -18712.410700 eV Core-core repulsion = 15212.518381 eV Total energy + Delta-G solvation = -3499.892319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.79297 -49.63026 -47.92838 -40.44375 -37.67297 -35.71376 -33.25175 -31.73628 -27.98981 -26.87897 -26.21808 -22.81395 -22.32851 -19.71308 -19.44814 -18.87323 -18.56718 -17.47752 -17.32987 -17.09807 -16.25507 -15.63068 -15.43423 -14.97952 -14.86479 -14.53732 -14.39854 -14.33525 -13.89092 -13.76090 -13.36507 -13.24573 -12.94656 -12.78578 -12.62393 -12.14121 -11.97172 -11.77391 -11.44539 -11.08496 -9.54779 -9.21020 -8.94397 -6.57851 0.28089 0.51045 1.20819 1.25513 1.33687 2.05322 2.25185 2.60676 2.90790 3.15763 3.78002 3.92699 4.02436 4.12411 4.28413 4.45256 4.60080 4.84741 4.92297 5.00249 5.13735 5.33390 5.51187 5.57465 5.72757 5.97193 6.05707 6.29470 6.64026 6.74364 8.12808 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022784 B = 0.014072 C = 0.010330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.627367 B = 1989.342233 C = 2709.937366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.065 4.065 3 C -0.181 4.181 4 C -0.109 4.109 5 C -0.046 4.046 6 F -0.156 7.156 7 C 0.040 3.960 8 C -0.464 4.464 9 H 0.065 0.935 10 C 0.068 3.932 11 N -0.840 5.840 12 Si 0.941 3.059 13 H -0.257 1.257 14 H -0.275 1.275 15 H -0.263 1.263 16 C -0.024 4.024 17 O -0.325 6.325 18 C 0.390 3.610 19 F -0.215 7.215 20 F -0.220 7.220 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.160 0.840 25 H 0.145 0.855 26 H 0.292 0.708 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 5.240 -2.360 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.127 4.127 5 C -0.066 4.066 6 F -0.135 7.135 7 C 0.036 3.964 8 C -0.493 4.493 9 H 0.083 0.917 10 C -0.148 4.148 11 N -0.466 5.466 12 Si 0.765 3.235 13 H -0.182 1.182 14 H -0.201 1.201 15 H -0.188 1.188 16 C -0.068 4.068 17 O -0.244 6.244 18 C 0.301 3.699 19 F -0.197 7.197 20 F -0.202 7.202 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.108 0.892 24 H 0.177 0.823 25 H 0.163 0.837 26 H 0.102 0.898 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.119 4.960 -2.271 11.496 hybrid contribution 1.090 -0.099 -0.741 1.321 sum -9.030 4.860 -3.011 10.688 Atomic orbital electron populations 1.20755 0.88723 1.03568 1.02810 1.20333 0.97865 0.91598 0.96761 1.20685 0.92154 0.97674 1.09491 1.21174 0.95567 0.96050 0.99934 1.18213 0.76441 0.95281 1.16664 1.91192 1.30427 1.97067 1.94828 1.18112 0.92643 0.92547 0.93091 1.18867 1.09091 0.99443 1.21949 0.91721 1.26468 0.92572 0.95756 0.99998 1.69726 1.09017 1.31437 1.36405 0.85980 0.80126 0.79538 0.77824 1.18205 1.20109 1.18754 1.18365 0.88885 0.84589 1.14979 1.86445 1.72969 1.37388 1.27573 1.24339 0.77795 0.91727 0.75990 1.92989 1.73785 1.72831 1.80125 1.93069 1.52435 1.94558 1.80115 0.90642 0.91642 0.89181 0.82280 0.83685 0.89769 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 8.80 71.24 0.63 -2.25 15 2 C -0.06 -2.45 5.73 -19.81 -0.11 -2.56 15 3 C -0.18 -6.30 9.69 22.41 0.22 -6.09 15 4 C -0.11 -4.28 10.00 22.27 0.22 -4.06 15 5 C -0.05 -2.25 5.66 22.84 0.13 -2.12 15 6 F -0.16 -8.07 12.89 44.97 0.58 -7.49 15 7 C 0.04 2.07 4.57 -21.15 -0.10 1.97 15 8 C -0.46 -26.69 7.65 23.38 0.18 -26.51 15 9 H 0.06 4.02 8.06 -2.91 -0.02 4.00 15 10 C 0.07 3.84 4.97 85.24 0.42 4.27 15 11 N -0.84 -48.11 13.93 21.83 0.30 -47.81 15 12 Si 0.94 46.75 24.73 68.60 1.70 48.44 15 13 H -0.26 -12.50 6.28 99.48 0.63 -11.88 15 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 15 15 H -0.26 -13.36 7.11 99.48 0.71 -12.66 15 16 C -0.02 -1.10 5.34 23.04 0.12 -0.98 15 17 O -0.32 -13.57 8.86 -89.90 -0.80 -14.37 15 18 C 0.39 13.68 6.35 113.37 0.72 14.40 15 19 F -0.22 -7.24 15.18 44.97 0.68 -6.56 15 20 F -0.22 -9.69 15.82 44.97 0.71 -8.98 15 21 H 0.08 2.03 7.28 -2.39 -0.02 2.01 15 22 H 0.06 1.84 7.52 -2.39 -0.02 1.82 15 23 H 0.09 1.98 8.08 -2.39 -0.02 1.96 15 24 H 0.16 4.08 8.06 -2.91 -0.02 4.06 15 25 H 0.15 4.71 8.06 -2.91 -0.02 4.68 15 26 H 0.29 15.20 8.30 -92.70 -0.77 14.43 15 27 H 0.21 4.81 8.14 -2.38 -0.02 4.79 15 Total: -1.00 -66.21 244.16 6.73 -59.48 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 1.13 Total: 1.20 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 2.43 Total: -23.92 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.30 Total: -47.81 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.80 Total: -14.37 kcal Atomic # 9 Polarization: -25.00 SS G_CDS: 1.97 Total: -23.03 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.70 Total: 48.44 kcal Total: -66.21 6.73 -59.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575662009.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.160 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds