Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36445 * 120.02558 * 2 1 4 4 C 1.39072 * 120.50407 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.73815 * 179.97438 * 4 3 2 6 6 C 1.38649 * 120.53079 * 359.97438 * 4 3 2 7 7 C 1.38270 * 120.02518 * 0.02562 * 6 4 3 8 8 O 1.35655 * 120.24807 * 180.02562 * 7 6 4 9 9 C 1.42894 * 116.99760 * 359.97438 * 8 7 6 10 10 F 1.39905 * 109.47258 * 300.00150 * 9 8 7 11 11 F 1.39906 * 109.47150 * 59.99766 * 9 8 7 12 12 C 1.40734 * 120.02109 * 180.02562 * 2 1 3 13 13 C 1.41100 * 120.25990 * 0.02562 * 12 2 1 14 14 H 1.07993 * 119.99960 * 38.87131 * 13 12 2 15 15 C 1.39896 * 119.99697 * 218.88076 * 13 12 2 16 16 N 1.30892 * 120.00452 * 20.12967 * 15 13 12 17 17 Si 1.86807 * 119.99749 * 200.13277 * 15 13 12 18 18 H 1.48498 * 109.46927 * 59.99651 * 17 15 13 19 19 H 1.48501 * 109.47181 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47103 * 299.99456 * 17 15 13 21 21 H 1.08998 * 109.47223 * 90.00225 * 1 2 3 22 22 H 1.09004 * 109.47063 * 210.00404 * 1 2 3 23 23 H 1.09002 * 109.47118 * 329.99937 * 1 2 3 24 24 H 1.08002 * 119.74084 * 359.73971 * 3 2 1 25 25 H 1.07997 * 119.98415 * 180.02562 * 6 4 3 26 26 H 1.09002 * 109.47452 * 179.97438 * 9 8 7 27 27 H 0.97000 * 120.00279 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.1813 0.0000 4 6 3.5804 1.1930 -0.0005 5 9 4.2408 2.3716 -0.0011 6 6 4.2947 0.0046 -0.0005 7 6 3.6251 -1.2051 -0.0006 8 8 4.3194 -2.3705 0.0000 9 6 5.7453 -2.2761 -0.0001 10 9 6.1670 -1.5877 -1.1427 11 9 6.1670 -1.5866 1.1419 12 6 2.2111 -1.2185 -0.0005 13 6 1.5116 -2.4439 -0.0016 14 1 0.6118 -2.5515 -0.5890 15 6 1.9837 -3.5194 0.7583 16 7 2.8083 -3.3065 1.7523 17 14 1.4372 -5.2595 0.3545 18 1 1.8425 -5.5959 -1.0339 19 1 2.0748 -6.2106 1.3000 20 1 -0.0397 -5.3553 0.4761 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6460 2.1145 -0.0043 25 1 5.3745 0.0239 -0.0005 26 1 6.1758 -3.2775 0.0008 27 1 3.1359 -4.0523 2.2790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575662010.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = -178.632467 kcal Electronic energy + Delta-G solvation = -18341.920226 eV Core-core repulsion = 14842.678592 eV Total energy + Delta-G solvation = -3499.241634 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.59297 -47.60081 -46.59201 -38.61793 -36.23667 -33.55405 -31.15493 -29.41597 -26.34264 -25.52689 -24.39019 -21.25269 -20.38902 -18.05772 -17.56644 -17.12394 -16.80612 -15.53044 -15.47111 -14.70863 -14.41364 -14.36207 -13.66947 -13.57345 -13.01769 -12.87286 -12.75109 -12.43455 -12.30299 -12.07599 -11.71013 -11.63753 -11.23217 -11.19808 -10.78472 -10.71276 -10.13537 -9.91963 -9.70080 -9.04889 -7.49658 -7.10744 -6.78894 -4.40453 2.50101 2.63039 3.06283 3.06715 3.12696 3.66097 3.94001 4.24502 4.48865 5.03195 5.19530 5.47471 5.58645 5.91803 6.02209 6.26708 6.45157 6.55072 6.61152 6.78230 7.09183 7.15754 7.34296 7.48159 7.63741 7.92666 8.15302 8.32007 8.76204 8.81282 10.18798 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.012530 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.604193 B = 2234.179750 C = 3370.705664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.143 4.143 3 C -0.136 4.136 4 C -0.005 4.005 5 F -0.168 7.168 6 C -0.199 4.199 7 C 0.069 3.931 8 O -0.273 6.273 9 C 0.400 3.600 10 F -0.214 7.214 11 F -0.207 7.207 12 C 0.108 3.892 13 C -0.463 4.463 14 H 0.085 0.915 15 C 0.087 3.913 16 N -0.771 5.771 17 Si 0.904 3.096 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.267 1.267 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.159 0.841 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -1.394 -1.864 2.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.145 4.145 3 C -0.155 4.155 4 C -0.025 4.025 5 F -0.147 7.147 6 C -0.219 4.219 7 C 0.025 3.975 8 O -0.189 6.189 9 C 0.308 3.692 10 F -0.196 7.196 11 F -0.189 7.189 12 C 0.105 3.895 13 C -0.492 4.492 14 H 0.103 0.897 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.728 3.272 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.192 1.192 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.176 0.824 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.894 -1.627 -1.655 2.995 hybrid contribution 0.437 -0.353 0.001 0.562 sum 2.331 -1.979 -1.654 3.477 Atomic orbital electron populations 1.20416 0.91961 1.01391 1.00293 1.19176 0.95076 0.91277 1.08930 1.20173 0.91699 0.97959 1.05677 1.16875 0.89728 0.79666 1.16208 1.91302 1.81635 1.46234 1.95526 1.20899 0.99094 0.91834 1.10048 1.18718 0.91524 0.81865 1.05414 1.86729 1.13846 1.30167 1.88149 1.23239 0.82902 0.91516 0.71564 1.93034 1.90455 1.83363 1.52774 1.93044 1.90326 1.83076 1.52465 1.16808 0.87376 0.93180 0.92144 1.19171 1.10118 0.94735 1.25126 0.89730 1.25719 0.93535 1.00853 0.93236 1.69765 1.23772 1.34232 1.11750 0.86439 0.79682 0.81514 0.79530 1.18863 1.20499 1.19158 0.93317 0.91176 0.93774 0.87653 0.86695 0.82408 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.46 36.01 0.34 -1.29 15 2 C -0.14 -3.34 5.90 -104.33 -0.62 -3.95 15 3 C -0.14 -3.10 9.58 -39.92 -0.38 -3.48 15 4 C 0.00 -0.12 7.31 -39.12 -0.29 -0.40 15 5 F -0.17 -3.88 17.26 2.25 0.04 -3.84 15 6 C -0.20 -4.88 8.23 -39.42 -0.32 -5.21 15 7 C 0.07 1.74 5.97 -38.37 -0.23 1.51 15 8 O -0.27 -6.39 7.33 -18.66 -0.14 -6.52 15 9 C 0.40 7.52 5.98 101.05 0.60 8.13 15 10 F -0.21 -4.12 15.59 2.25 0.04 -4.08 15 11 F -0.21 -4.21 15.59 2.25 0.04 -4.17 15 12 C 0.11 2.75 5.37 -106.66 -0.57 2.18 15 13 C -0.46 -11.54 7.59 -37.88 -0.29 -11.83 15 14 H 0.08 2.01 7.48 -52.49 -0.39 1.61 15 15 C 0.09 2.08 4.41 -17.33 -0.08 2.00 15 16 N -0.77 -19.18 11.25 55.55 0.62 -18.56 15 17 Si 0.90 17.99 29.60 -169.99 -5.03 12.96 15 18 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 19 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.07 1.40 7.00 -51.93 -0.36 1.03 15 23 H 0.04 0.76 8.08 -51.93 -0.42 0.34 15 24 H 0.11 2.12 8.06 -52.49 -0.42 1.69 15 25 H 0.12 2.71 5.10 -52.49 -0.27 2.45 15 26 H 0.16 2.16 8.14 -51.93 -0.42 1.74 15 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 LS Contribution 248.04 15.07 3.74 3.74 Total: -1.00 -27.81 248.04 -4.37 -32.18 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -1.85 Total: 0.65 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.83 Total: -12.35 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.62 Total: -18.56 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.14 Total: -6.52 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.10 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.81 -4.37 -32.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575662010.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.451 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds