Wall clock time and date at job start Mon Mar 30 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30493 * 121.03620 * 2 1 4 4 S 1.69961 * 105.75610 * 180.27288 * 3 2 1 5 5 C 1.72309 * 94.54453 * 0.02562 * 4 3 2 6 6 C 1.47433 * 127.51661 * 179.97438 * 5 4 3 7 7 C 1.40149 * 119.90150 * 179.74501 * 6 5 4 8 8 C 1.36175 * 120.09888 * 179.75902 * 7 6 5 9 9 C 1.40972 * 119.89747 * 0.49427 * 8 7 6 10 10 C 1.40937 * 120.09971 * 179.73774 * 9 8 7 11 11 H 1.07998 * 120.00160 * 204.73944 * 10 9 8 12 12 C 1.40063 * 119.99666 * 24.74029 * 10 9 8 13 13 N 1.30760 * 120.00166 * 17.94250 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 197.94355 * 12 10 9 15 15 H 1.48507 * 109.47272 * 89.99805 * 14 12 10 16 16 H 1.48500 * 109.47483 * 210.00031 * 14 12 10 17 17 H 1.48499 * 109.47088 * 330.00474 * 14 12 10 18 18 C 1.40983 * 119.80330 * 359.76414 * 9 8 7 19 19 C 1.36172 * 119.89958 * 359.97438 * 18 9 8 20 20 N 1.30742 * 121.03759 * 180.28360 * 2 1 3 21 21 H 1.08998 * 109.46848 * 269.71699 * 1 2 3 22 22 H 1.08993 * 109.47012 * 29.71435 * 1 2 3 23 23 H 1.08999 * 109.47193 * 149.71997 * 1 2 3 24 24 H 1.08000 * 119.94766 * 0.02562 * 7 6 5 25 25 H 1.08000 * 120.04432 * 180.23384 * 8 7 6 26 26 H 0.96996 * 120.00119 * 179.97438 * 13 12 10 27 27 H 1.08008 * 120.05143 * 179.97438 * 18 9 8 28 28 H 1.07998 * 119.94932 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1799 1.1181 0.0000 4 16 3.8194 0.6702 -0.0078 5 6 3.4984 -1.0227 -0.0114 6 6 4.4801 -2.1227 -0.0190 7 6 4.0389 -3.4529 -0.0156 8 6 4.9420 -4.4720 -0.0275 9 6 6.3227 -4.1873 -0.0328 10 6 7.2612 -5.2387 -0.0396 11 1 8.2562 -5.0769 0.3480 12 6 6.9034 -6.4934 -0.5489 13 7 5.8567 -6.6102 -1.3239 14 14 7.9214 -8.0000 -0.1210 15 1 7.3854 -8.6251 1.1148 16 1 7.8550 -8.9760 -1.2383 17 1 9.3333 -7.5967 0.1007 18 6 6.7619 -2.8476 -0.0307 19 6 5.8517 -1.8348 -0.0241 20 7 2.1812 -1.1202 -0.0055 21 1 -0.3633 -0.0051 1.0276 22 1 -0.3633 0.8925 -0.5094 23 1 -0.3633 -0.8874 -0.5182 24 1 2.9810 -3.6700 -0.0078 25 1 4.6010 -5.4967 -0.0287 26 1 5.6091 -7.4790 -1.6769 27 1 7.8188 -2.6249 -0.0343 28 1 6.1872 -0.8083 -0.0229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669380920.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:59 Heat of formation + Delta-G solvation = 43.003166 kcal Electronic energy + Delta-G solvation = -14334.787977 eV Core-core repulsion = 11862.059548 eV Total energy + Delta-G solvation = -2472.728429 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05593 -39.50055 -36.02748 -33.92736 -31.65032 -31.51393 -30.55833 -28.11235 -24.98912 -23.11949 -22.40048 -20.31041 -19.59669 -19.37763 -17.53518 -16.94191 -16.41753 -15.82626 -15.36077 -15.13397 -14.48733 -14.04976 -13.92762 -13.70302 -13.46936 -13.14794 -12.95477 -12.76803 -12.70598 -12.54237 -12.21309 -11.72805 -11.49898 -11.41642 -11.05171 -10.60661 -10.26733 -9.64062 -9.19713 -8.85996 -6.48094 -0.78072 0.33063 0.83302 0.87083 1.14562 1.41001 1.47948 1.56135 1.85514 2.14433 2.63094 2.96208 3.60831 4.02796 4.30259 4.34212 4.41486 4.65284 4.71294 4.84236 4.93253 4.99627 5.13866 5.18193 5.24495 5.54226 5.75947 5.93242 6.00130 6.11767 6.47853 6.67257 6.76519 6.81748 8.06023 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.051191 B = 0.005072 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.835820 B = 5519.180667 C = 5985.203915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.266 3.734 3 N -0.537 5.537 4 S 0.171 5.829 5 C 0.180 3.820 6 C -0.209 4.209 7 C -0.037 4.037 8 C -0.197 4.197 9 C 0.101 3.899 10 C -0.440 4.440 11 H 0.100 0.900 12 C 0.033 3.967 13 N -0.786 5.786 14 Si 0.991 3.009 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.250 1.250 18 C -0.233 4.233 19 C -0.038 4.038 20 N -0.579 5.579 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.300 0.700 27 H 0.122 0.878 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 2.560 1.644 3.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 N -0.369 5.369 4 S 0.318 5.682 5 C -0.094 4.094 6 C -0.218 4.218 7 C -0.059 4.059 8 C -0.217 4.217 9 C 0.097 3.903 10 C -0.467 4.467 11 H 0.118 0.882 12 C -0.188 4.188 13 N -0.409 5.409 14 Si 0.810 3.190 15 H -0.185 1.185 16 H -0.191 1.191 17 H -0.174 1.174 18 C -0.253 4.253 19 C -0.059 4.059 20 N -0.305 5.305 21 H 0.119 0.881 22 H 0.116 0.884 23 H 0.112 0.888 24 H 0.121 0.879 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.831 3.844 1.480 4.508 hybrid contribution -0.264 -1.421 -0.050 1.446 sum -2.096 2.423 1.430 3.508 Atomic orbital electron populations 1.20513 0.81418 1.05038 1.05111 1.24273 1.01801 0.82477 0.93700 1.77528 0.98559 1.26645 1.34211 1.84297 1.12838 1.01746 1.69366 1.26926 0.92332 0.98608 0.91514 1.17211 0.90230 0.89448 1.24942 1.20593 0.98391 0.91568 0.95361 1.20977 0.93220 0.98105 1.09373 1.18193 0.93009 0.93021 0.86102 1.20310 1.00063 0.94765 1.31611 0.88194 1.27065 0.96231 1.03784 0.91734 1.69823 1.22973 1.28717 1.19351 0.85037 0.79315 0.75479 0.79128 1.18501 1.19133 1.17357 1.20900 0.98838 0.92104 1.13460 1.20602 0.90997 0.98755 0.95525 1.67588 1.05148 1.30157 1.27605 0.88125 0.88402 0.88774 0.87887 0.87071 0.88829 0.85986 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.41 71.24 0.74 -0.72 15 2 C 0.27 9.62 7.56 139.45 1.05 10.68 15 3 N -0.54 -20.12 12.17 -59.87 -0.73 -20.85 15 4 S 0.17 6.32 22.92 -56.49 -1.29 5.02 15 5 C 0.18 7.57 7.37 87.08 0.64 8.21 15 6 C -0.21 -9.30 5.89 -19.93 -0.12 -9.42 15 7 C -0.04 -1.73 9.64 22.25 0.21 -1.51 15 8 C -0.20 -9.60 8.63 22.46 0.19 -9.41 15 9 C 0.10 4.87 5.57 -21.28 -0.12 4.75 15 10 C -0.44 -20.22 9.03 23.37 0.21 -20.01 15 11 H 0.10 4.25 7.91 -2.91 -0.02 4.22 15 12 C 0.03 1.41 5.13 85.30 0.44 1.85 15 13 N -0.79 -35.93 10.96 21.85 0.24 -35.69 15 14 Si 0.99 32.13 29.60 68.60 2.03 34.16 15 15 H -0.26 -8.33 7.11 99.48 0.71 -7.62 15 16 H -0.27 -8.32 7.11 99.48 0.71 -7.61 15 17 H -0.25 -7.79 7.11 99.48 0.71 -7.08 15 18 C -0.23 -10.14 9.73 22.46 0.22 -9.92 15 19 C -0.04 -1.56 9.56 22.25 0.21 -1.35 15 20 N -0.58 -23.90 10.32 -191.13 -1.97 -25.87 15 21 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.10 4.70 7.90 -2.91 -0.02 4.67 15 25 H 0.11 5.58 6.16 -2.91 -0.02 5.56 15 26 H 0.30 12.21 8.29 -92.71 -0.77 11.44 15 27 H 0.12 4.74 8.06 -2.91 -0.02 4.72 15 28 H 0.12 4.34 7.42 -2.91 -0.02 4.32 15 Total: -1.00 -54.36 265.97 3.15 -51.21 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.18 Total: 18.88 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.69 Total: -26.86 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.46 Total: -82.42 kcal Atomic # 14 Polarization: 32.13 SS G_CDS: 2.03 Total: 34.16 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.29 Total: 5.02 kcal Total: -54.36 3.15 -51.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669380920.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.215 kcal (2) G-P(sol) polarization free energy of solvation -54.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds