Wall clock time and date at job start Mon Mar 30 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33198 * 125.36817 * 2 1 4 4 H 0.97007 * 124.40075 * 0.02562 * 3 2 1 5 5 C 1.38556 * 111.20151 * 180.02562 * 3 2 1 6 6 C 1.38984 * 132.68647 * 180.02562 * 5 3 2 7 7 C 1.38046 * 119.99155 * 179.97438 * 6 5 3 8 8 C 1.38503 * 120.61559 * 359.97438 * 7 6 5 9 9 N 1.48019 * 119.91728 * 180.02562 * 8 7 6 10 10 O 1.31697 * 119.99790 * 359.97438 * 9 8 7 11 11 O 1.31698 * 120.00339 * 179.97438 * 9 8 7 12 12 C 1.38083 * 120.17165 * 0.02562 * 8 7 6 13 13 C 1.38955 * 119.67741 * 359.68953 * 12 8 7 14 14 C 1.41080 * 125.36461 * 179.97438 * 2 1 3 15 15 C 1.38499 * 127.16857 * 359.97438 * 14 2 1 16 16 H 1.08008 * 119.99477 * 31.01907 * 15 14 2 17 17 C 1.46689 * 120.00158 * 211.01355 * 15 14 2 18 18 N 1.29460 * 120.00163 * 22.33246 * 17 15 14 19 19 Si 1.86796 * 119.99754 * 202.05454 * 17 15 14 20 20 H 1.48503 * 109.47520 * 60.00235 * 19 17 15 21 21 H 1.48497 * 109.46959 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47316 * 299.99900 * 19 17 15 23 23 H 1.08997 * 109.46996 * 267.07623 * 1 2 3 24 24 H 1.08999 * 109.47237 * 27.07297 * 1 2 3 25 25 H 1.09004 * 109.47117 * 147.07666 * 1 2 3 26 26 H 1.07994 * 120.00502 * 359.97438 * 6 5 3 27 27 H 1.08007 * 119.69210 * 180.02562 * 7 6 5 28 28 H 1.08003 * 120.16707 * 180.02562 * 12 8 7 29 29 H 0.97007 * 119.99962 * 5.14314 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0862 0.0000 4 1 1.9425 1.9964 0.0004 5 6 3.6214 0.7471 -0.0006 6 6 4.7851 1.5070 -0.0003 7 6 6.0166 0.8833 -0.0006 8 6 6.1073 -0.4988 -0.0005 9 7 7.4358 -1.1515 -0.0001 10 8 8.5297 -0.4181 -0.0004 11 8 7.5240 -2.4655 0.0005 12 6 4.9615 -1.2695 -0.0007 13 6 3.7169 -0.6517 0.0055 14 6 2.3236 -1.1505 0.0005 15 6 1.9078 -2.4716 0.0016 16 1 0.9809 -2.7464 -0.4799 17 6 2.7265 -3.4976 0.6566 18 7 3.5721 -3.1607 1.5771 19 14 2.5432 -5.2911 0.1677 20 1 2.8604 -5.4460 -1.2747 21 1 3.4757 -6.1211 0.9719 22 1 1.1474 -5.7323 0.4178 23 1 -0.3633 -0.0524 1.0263 24 1 -0.3634 0.9150 -0.4677 25 1 -0.3633 -0.8626 -0.5586 26 1 4.7259 2.5853 0.0000 27 1 6.9178 1.4785 0.0000 28 1 5.0323 -2.3472 -0.0002 29 1 3.6119 -2.2422 1.8865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687761466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:15 Heat of formation + Delta-G solvation = 41.925519 kcal Electronic energy + Delta-G solvation = -17279.511183 eV Core-core repulsion = 14363.983153 eV Total energy + Delta-G solvation = -2915.528031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18067 -39.89920 -37.64065 -36.21965 -35.18433 -32.77395 -31.93703 -31.13068 -28.95997 -26.72337 -26.18556 -23.15213 -22.41595 -21.71153 -19.58309 -18.96510 -18.64845 -18.34374 -16.77305 -16.50777 -15.83005 -15.77891 -15.50229 -15.02432 -14.90453 -14.15618 -13.94884 -13.70307 -13.22651 -12.95482 -12.71468 -12.48813 -12.23304 -12.16928 -11.98101 -11.94403 -11.71227 -11.64584 -11.10736 -10.67912 -9.53483 -9.42417 -8.83039 -6.08652 -1.61483 0.13727 0.50371 0.54583 1.36860 1.51360 1.77071 1.94802 2.24776 2.32129 2.58044 2.96426 3.56847 3.78171 4.11578 4.24684 4.29830 4.44462 4.58249 4.63398 4.89259 4.93348 5.04228 5.06273 5.18239 5.24704 5.29047 5.48649 5.71911 5.84688 6.04741 6.11880 6.54827 6.61190 6.91714 7.82486 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.011242 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.042164 B = 2489.989400 C = 4036.358419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.136 4.136 3 N -0.480 5.480 4 H 0.427 0.573 5 C 0.076 3.924 6 C -0.104 4.104 7 C -0.075 4.075 8 C -0.092 4.092 9 N 0.026 4.974 10 O -0.261 6.261 11 O -0.318 6.318 12 C 0.029 3.971 13 C -0.171 4.171 14 C 0.024 3.976 15 C -0.491 4.491 16 H 0.099 0.901 17 C 0.000 4.000 18 N -0.776 5.776 19 Si 1.110 2.890 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.240 1.240 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.178 0.822 27 H 0.158 0.842 28 H 0.118 0.882 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 7.648 -2.135 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.248 4.248 3 N -0.075 5.075 4 H 0.267 0.733 5 C -0.045 4.045 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.189 4.189 9 N 0.461 4.539 10 O -0.432 6.432 11 O -0.474 6.474 12 C 0.008 3.992 13 C -0.179 4.179 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.116 0.884 17 C -0.223 4.223 18 N -0.397 5.397 19 Si 0.926 3.074 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.163 1.163 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.195 0.805 27 H 0.176 0.824 28 H 0.136 0.864 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.553 6.357 -1.804 10.809 hybrid contribution 0.246 1.415 -0.114 1.441 sum -8.307 7.772 -1.919 11.537 Atomic orbital electron populations 1.19896 0.85935 1.02587 1.01691 1.20803 0.94113 0.84529 1.25308 1.40620 1.02921 1.09183 1.54764 0.73294 1.18350 0.85653 0.93161 1.07365 1.20050 0.86781 1.00556 1.05180 1.20460 0.99750 0.89587 0.99892 1.20043 0.78415 0.93884 1.26585 1.50356 1.04651 1.02241 0.96633 1.96071 1.24585 1.62140 1.60443 1.96195 1.96211 0.90815 1.64221 1.20435 0.89921 1.00002 0.88847 1.19302 0.93037 0.94068 1.11470 1.18381 0.87736 0.93488 0.98531 1.21223 1.08671 0.91633 1.30327 0.88354 1.29949 0.89751 1.10929 0.91687 1.70131 1.26626 1.24070 1.18852 0.83102 0.79113 0.67562 0.77577 1.18870 1.20523 1.16295 0.92282 0.90517 0.91624 0.80481 0.82397 0.86413 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.18 10.22 71.24 0.73 -0.45 15 2 C -0.14 -4.82 7.23 43.05 0.31 -4.51 15 3 N -0.48 -14.39 5.86 -173.15 -1.02 -15.41 15 4 H 0.43 8.60 8.96 -92.70 -0.83 7.77 15 5 C 0.08 2.72 7.22 38.74 0.28 3.00 15 6 C -0.10 -3.17 10.07 22.40 0.23 -2.94 15 7 C -0.08 -2.75 9.55 22.29 0.21 -2.54 15 8 C -0.09 -4.24 6.89 36.40 0.25 -3.99 15 9 N 0.03 1.32 4.98 -46.40 -0.23 1.09 15 10 O -0.26 -12.88 19.14 3.52 0.07 -12.82 15 11 O -0.32 -17.90 19.15 3.52 0.07 -17.83 15 12 C 0.03 1.43 8.06 22.40 0.18 1.61 15 13 C -0.17 -7.71 5.27 -20.04 -0.11 -7.82 15 14 C 0.02 1.05 5.46 -19.93 -0.11 0.94 15 15 C -0.49 -22.38 9.20 24.54 0.23 -22.15 15 16 H 0.10 4.17 7.72 -2.91 -0.02 4.14 15 17 C 0.00 0.01 4.91 87.25 0.43 0.44 15 18 N -0.78 -39.47 11.50 23.24 0.27 -39.20 15 19 Si 1.11 40.08 30.08 68.60 2.06 42.14 15 20 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 21 H -0.28 -10.63 7.11 99.48 0.71 -9.92 15 22 H -0.24 -7.41 7.11 99.48 0.71 -6.70 15 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.06 1.83 7.75 -2.39 -0.02 1.81 15 26 H 0.18 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.16 5.05 7.56 -2.91 -0.02 5.03 15 28 H 0.12 6.40 5.92 -2.91 -0.02 6.38 15 29 H 0.29 15.17 6.52 -92.70 -0.60 14.56 15 Total: -1.00 -63.79 264.90 4.39 -59.40 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.54 Total: 21.06 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 2.63 Total: -38.42 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.98 Total: -53.52 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: 0.13 Total: -30.65 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.06 Total: 42.14 kcal Total: -63.79 4.39 -59.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687761466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.321 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds