Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00488 * 3 2 1 5 5 H 1.48498 * 109.46721 * 29.99904 * 3 2 1 6 6 H 1.48497 * 109.47362 * 149.99848 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.50703 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38673 * 120.79081 * 279.71972 * 12 9 7 14 14 C 1.38181 * 119.16208 * 179.75652 * 13 12 9 15 15 N 1.31886 * 120.76298 * 0.52903 * 14 13 12 16 16 C 1.31850 * 121.72849 * 359.74456 * 15 14 13 17 17 C 1.50699 * 119.62109 * 179.97438 * 16 15 14 18 18 F 1.39904 * 109.46970 * 269.97916 * 17 16 15 19 19 F 1.39901 * 109.47012 * 29.97367 * 17 16 15 20 20 F 1.39899 * 109.47126 * 149.97459 * 17 16 15 21 21 C 1.38235 * 120.76434 * 359.97438 * 16 15 14 22 22 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 23 23 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 24 24 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 25 25 H 1.08002 * 120.41709 * 0.02562 * 13 12 9 26 26 H 1.08000 * 119.61397 * 180.25310 * 14 13 12 27 27 H 1.07993 * 120.41959 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.8444 -4.0535 -1.1736 14 6 3.7408 -5.1044 -1.1341 15 7 4.0060 -5.7225 0.0004 16 6 3.4368 -5.3645 1.1346 17 6 3.7743 -6.1043 2.4034 18 9 2.8907 -7.1767 2.5669 19 9 5.0849 -6.5876 2.3269 20 9 3.6604 -5.2357 3.4941 21 6 2.5341 -4.3183 1.1734 22 1 -0.4850 0.8401 0.0004 23 1 -0.3005 -1.8576 -1.1911 24 1 0.9651 -2.5260 -2.0381 25 1 2.6282 -3.5540 -2.1065 26 1 4.2264 -5.4262 -2.0435 27 1 2.0715 -4.0295 2.1055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713768128.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -124.558838 kcal Electronic energy + Delta-G solvation = -17569.511347 eV Core-core repulsion = 14104.907272 eV Total energy + Delta-G solvation = -3464.604074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.93313 -47.46967 -47.39232 -39.94004 -35.44078 -32.35894 -31.73326 -30.30312 -26.64472 -25.96001 -23.60360 -22.77123 -20.56765 -18.31402 -18.22443 -17.77059 -16.74445 -15.98101 -15.77219 -15.02282 -14.52695 -14.35438 -14.17006 -13.85368 -13.62450 -13.61724 -13.56638 -13.54443 -12.93112 -12.47686 -12.35082 -11.59780 -11.21365 -11.11210 -10.91814 -10.29530 -10.17387 -9.28577 -9.13711 -9.01352 -8.77261 -7.45486 -6.30022 -4.47753 1.16548 1.66739 2.75235 3.11404 3.20071 3.23779 3.77835 3.90947 4.17179 4.22232 4.66263 4.92203 4.97201 5.32803 5.37636 5.54161 5.71507 5.93683 6.24134 6.56332 6.62636 6.91689 7.37360 7.54309 7.80800 7.99245 8.41378 8.67841 8.86945 9.25228 10.68764 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.006441 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.105714 B = 4345.943048 C = 4595.294153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.056 0.944 11 N -0.849 5.849 12 C 0.019 3.981 13 C -0.131 4.131 14 C 0.093 3.907 15 N -0.468 5.468 16 C 0.024 3.976 17 C 0.525 3.475 18 F -0.176 7.176 19 F -0.170 7.170 20 F -0.173 7.173 21 C -0.125 4.125 22 H 0.269 0.731 23 H 0.361 0.639 24 H 0.313 0.687 25 H 0.141 0.859 26 H 0.160 0.840 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.825 -7.720 0.446 9.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.076 0.924 9 C 0.128 3.872 10 H 0.074 0.926 11 N -0.380 5.380 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.065 4.065 15 N -0.177 5.177 16 C -0.114 4.114 17 C 0.469 3.531 18 F -0.158 7.158 19 F -0.152 7.152 20 F -0.154 7.154 21 C -0.146 4.146 22 H 0.079 0.921 23 H 0.178 0.822 24 H 0.122 0.878 25 H 0.158 0.842 26 H 0.177 0.823 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.029 -9.036 0.779 10.371 hybrid contribution 0.333 2.544 0.028 2.566 sum 5.361 -6.492 0.807 8.458 Atomic orbital electron populations 1.69727 1.05911 1.27681 1.49405 1.25008 0.94989 0.99502 0.93841 0.86435 0.79893 0.82487 0.78330 1.20431 1.20880 1.19713 1.21696 0.93657 0.90561 1.53279 0.92406 1.18078 0.88929 0.87571 0.92611 0.92647 1.59535 1.18332 1.56420 1.03673 1.21002 0.93613 0.93385 0.90998 1.22168 0.96019 0.96900 1.00056 1.22607 0.95900 0.93096 0.94857 1.67035 1.23597 1.29089 0.98019 1.20683 1.00178 0.97853 0.92677 1.17947 0.74627 0.76980 0.83503 1.93206 1.69021 1.57479 1.96051 1.93191 1.36930 1.88631 1.96424 1.93200 1.95762 1.69612 1.56862 1.21724 0.97442 0.94628 1.00766 0.92114 0.82247 0.87754 0.84164 0.82299 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 11.54 55.43 0.64 -22.33 15 2 C 0.07 1.77 5.38 -17.82 -0.10 1.68 15 3 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.55 -13.78 8.71 -34.44 -0.30 -14.08 15 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 15 9 C 0.24 5.44 2.98 -70.01 -0.21 5.23 15 10 H 0.06 1.39 8.04 -51.93 -0.42 0.97 15 11 N -0.85 -18.41 9.02 -6.65 -0.06 -18.47 15 12 C 0.02 0.37 4.92 -104.32 -0.51 -0.14 15 13 C -0.13 -2.27 9.39 -39.44 -0.37 -2.64 15 14 C 0.09 1.46 11.18 -17.55 -0.20 1.27 15 15 N -0.47 -8.24 9.96 -9.47 -0.09 -8.34 15 16 C 0.02 0.43 6.29 -82.59 -0.52 -0.09 15 17 C 0.52 8.54 3.43 36.01 0.12 8.66 15 18 F -0.18 -2.80 17.30 2.25 0.04 -2.76 15 19 F -0.17 -2.78 17.04 2.25 0.04 -2.74 15 20 F -0.17 -2.74 16.44 2.25 0.04 -2.70 15 21 C -0.12 -2.33 9.11 -39.44 -0.36 -2.69 15 22 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 23 H 0.36 8.47 7.08 -39.29 -0.28 8.19 15 24 H 0.31 6.28 7.42 -39.29 -0.29 5.99 15 25 H 0.14 2.21 6.77 -52.49 -0.36 1.85 15 26 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.14 2.50 7.60 -52.49 -0.40 2.10 15 LS Contribution 254.58 15.07 3.84 3.84 Total: -1.00 -25.95 254.58 -4.73 -30.68 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -1.71 Total: 10.78 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.44 Total: -2.80 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.49 Total: -49.14 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.95 -4.73 -30.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713768128.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.877 kcal (2) G-P(sol) polarization free energy of solvation -25.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds