Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00169 * 2 1 4 4 H 1.48496 * 109.46908 * 269.99755 * 3 2 1 5 5 H 1.48498 * 109.47160 * 30.00190 * 3 2 1 6 6 H 1.48504 * 109.47046 * 149.99800 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99836 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46945 * 59.99859 * 9 7 2 11 11 N 1.46894 * 109.47213 * 299.99431 * 9 7 2 12 12 C 1.50699 * 109.46770 * 179.97438 * 9 7 2 13 13 C 1.38682 * 120.78768 * 80.00468 * 12 9 7 14 14 C 1.38185 * 119.16016 * 179.97438 * 13 12 9 15 15 N 1.31880 * 120.76785 * 0.02562 * 14 13 12 16 16 C 1.31860 * 121.72574 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.61623 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.47079 * 4.99969 * 17 16 15 19 19 F 1.39895 * 109.47302 * 124.99980 * 17 16 15 20 20 F 1.39905 * 109.46881 * 244.99732 * 17 16 15 21 21 C 1.38220 * 120.76174 * 359.97438 * 16 15 14 22 22 H 0.97003 * 119.99967 * 359.97438 * 1 2 3 23 23 H 1.00896 * 111.00372 * 176.05070 * 11 9 7 24 24 H 1.00905 * 111.00251 * 300.00489 * 11 9 7 25 25 H 1.07995 * 120.41697 * 0.26627 * 13 12 9 26 26 H 1.08003 * 119.60983 * 179.97438 * 14 13 12 27 27 H 1.08004 * 120.41652 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8897 11 7 0.4060 -2.5768 1.1997 12 6 2.2302 -3.6446 0.0005 13 6 2.8487 -4.0497 1.1738 14 6 3.7407 -5.1044 1.1353 15 7 4.0061 -5.7224 0.0009 16 6 3.4370 -5.3644 -1.1334 17 6 3.7755 -6.1036 -2.4023 18 9 4.6143 -7.1827 -2.1038 19 9 2.5996 -6.5769 -2.9942 20 9 4.4268 -5.2373 -3.2870 21 6 2.5335 -4.3190 -1.1720 22 1 -0.4850 0.8401 0.0004 23 1 -0.1579 -3.4134 1.1912 24 1 0.9637 -2.5251 2.0390 25 1 2.6323 -3.5504 2.1066 26 1 4.2268 -5.4257 2.0446 27 1 2.0710 -4.0302 -2.1042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713768129.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = -115.250483 kcal Electronic energy + Delta-G solvation = -17566.635534 eV Core-core repulsion = 14102.435100 eV Total energy + Delta-G solvation = -3464.200434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.97972 -47.51362 -47.43820 -40.05300 -35.41267 -32.21488 -31.82502 -30.42636 -26.71078 -25.98484 -23.50238 -22.85136 -20.60643 -18.36682 -18.27087 -17.83265 -16.68432 -16.06122 -15.69816 -14.80721 -14.55886 -14.44225 -14.22244 -14.02619 -13.90410 -13.64120 -13.60904 -13.60408 -12.86512 -12.64002 -12.44676 -11.74617 -11.13585 -10.96323 -10.85374 -10.24199 -9.72703 -9.45074 -9.12723 -8.85859 -8.57860 -7.37523 -6.05387 -4.22696 1.04808 1.55291 2.68908 3.24920 3.32459 3.34733 3.71550 3.80002 4.15015 4.35871 4.59356 4.86130 5.17279 5.26750 5.28577 5.42989 5.60424 5.84384 6.05965 6.35041 6.51220 6.83996 7.20630 7.71500 7.89698 7.92548 8.37904 8.75657 8.91674 9.47646 10.98834 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.006456 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.439352 B = 4336.318548 C = 4588.197433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.087 3.913 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.253 3.747 10 H 0.055 0.945 11 N -0.806 5.806 12 C -0.030 4.030 13 C -0.144 4.144 14 C 0.095 3.905 15 N -0.466 5.466 16 C 0.025 3.975 17 C 0.523 3.477 18 F -0.168 7.168 19 F -0.175 7.175 20 F -0.174 7.174 21 C -0.120 4.120 22 H 0.259 0.741 23 H 0.301 0.699 24 H 0.320 0.680 25 H 0.140 0.860 26 H 0.160 0.840 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -9.665 -0.547 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.121 4.121 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.073 0.927 9 C 0.143 3.857 10 H 0.073 0.927 11 N -0.332 5.332 12 C -0.040 4.040 13 C -0.164 4.164 14 C -0.062 4.062 15 N -0.176 5.176 16 C -0.113 4.113 17 C 0.468 3.532 18 F -0.150 7.150 19 F -0.157 7.157 20 F -0.155 7.155 21 C -0.141 4.141 22 H 0.069 0.931 23 H 0.112 0.888 24 H 0.133 0.867 25 H 0.158 0.842 26 H 0.177 0.823 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.868 -9.575 -0.846 10.775 hybrid contribution 0.566 0.637 0.033 0.853 sum 5.434 -8.938 -0.814 10.492 Atomic orbital electron populations 1.70090 1.05733 1.26168 1.45604 1.24927 0.94697 0.98714 0.93782 0.86672 0.79938 0.83544 0.78217 1.20560 1.21087 1.19915 1.20727 0.92219 0.88998 1.55784 0.92670 1.18352 0.87313 0.88263 0.91746 0.92682 1.59167 1.27732 1.42207 1.04115 1.22453 0.95427 0.95046 0.91100 1.22217 0.96908 0.97114 1.00185 1.22614 0.95792 0.92878 0.94941 1.67085 1.23373 1.29144 0.97991 1.20780 0.99932 0.97948 0.92657 1.17971 0.74468 0.77228 0.83563 1.93193 1.71965 1.56592 1.93207 1.93205 1.48083 1.88945 1.85418 1.93223 1.81705 1.69811 1.70766 1.21769 0.97194 0.94359 1.00822 0.93116 0.88831 0.86729 0.84217 0.82269 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.12 12.77 55.43 0.71 -22.41 15 2 C 0.09 2.28 5.39 -17.82 -0.10 2.18 15 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.54 -13.72 8.71 -34.44 -0.30 -14.02 15 8 H 0.06 1.42 7.74 -52.48 -0.41 1.02 15 9 C 0.25 5.68 2.88 -70.02 -0.20 5.48 15 10 H 0.06 1.36 8.04 -51.93 -0.42 0.94 15 11 N -0.81 -16.98 8.37 -6.65 -0.06 -17.03 15 12 C -0.03 -0.56 4.91 -104.32 -0.51 -1.07 15 13 C -0.14 -2.37 9.39 -39.44 -0.37 -2.74 15 14 C 0.10 1.44 11.18 -17.55 -0.20 1.25 15 15 N -0.47 -7.97 9.74 -9.47 -0.09 -8.06 15 16 C 0.03 0.43 6.26 -82.59 -0.52 -0.08 15 17 C 0.52 8.30 3.32 36.01 0.12 8.42 15 18 F -0.17 -2.67 16.85 2.25 0.04 -2.64 15 19 F -0.18 -2.66 17.16 2.25 0.04 -2.62 15 20 F -0.17 -2.76 17.28 2.25 0.04 -2.72 15 21 C -0.12 -2.17 9.28 -39.44 -0.37 -2.53 15 22 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 23 H 0.30 5.62 9.06 -39.29 -0.36 5.26 15 24 H 0.32 6.26 7.43 -39.29 -0.29 5.97 15 25 H 0.14 2.08 6.78 -52.49 -0.36 1.73 15 26 H 0.16 1.82 8.06 -52.48 -0.42 1.40 15 27 H 0.14 2.40 8.06 -52.48 -0.42 1.97 15 LS Contribution 257.83 15.07 3.89 3.89 Total: -1.00 -27.86 257.83 -4.71 -32.57 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -1.81 Total: 6.83 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.44 Total: -3.12 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.56 Total: -47.50 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.12 Total: -7.98 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.86 -4.71 -32.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713768129.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.684 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds