Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00169 * 2 1 4 4 H 1.48496 * 109.46908 * 269.99755 * 3 2 1 5 5 H 1.48498 * 109.47160 * 30.00190 * 3 2 1 6 6 H 1.48504 * 109.47046 * 149.99800 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99836 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46945 * 59.99859 * 9 7 2 11 11 N 1.46894 * 109.47213 * 299.99431 * 9 7 2 12 12 C 1.50699 * 109.46770 * 179.97438 * 9 7 2 13 13 C 1.38682 * 120.78768 * 80.00468 * 12 9 7 14 14 C 1.38185 * 119.16016 * 179.97438 * 13 12 9 15 15 N 1.31880 * 120.76785 * 0.02562 * 14 13 12 16 16 C 1.31860 * 121.72574 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.61623 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.47079 * 4.99969 * 17 16 15 19 19 F 1.39895 * 109.47302 * 124.99980 * 17 16 15 20 20 F 1.39905 * 109.46881 * 244.99732 * 17 16 15 21 21 C 1.38220 * 120.76174 * 359.97438 * 16 15 14 22 22 H 0.97003 * 119.99967 * 359.97438 * 1 2 3 23 23 H 1.00896 * 111.00372 * 176.05070 * 11 9 7 24 24 H 1.00905 * 111.00251 * 300.00489 * 11 9 7 25 25 H 1.07995 * 120.41697 * 0.26627 * 13 12 9 26 26 H 1.08003 * 119.60983 * 179.97438 * 14 13 12 27 27 H 1.08004 * 120.41652 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8897 11 7 0.4060 -2.5768 1.1997 12 6 2.2302 -3.6446 0.0005 13 6 2.8487 -4.0497 1.1738 14 6 3.7407 -5.1044 1.1353 15 7 4.0061 -5.7224 0.0009 16 6 3.4370 -5.3644 -1.1334 17 6 3.7755 -6.1036 -2.4023 18 9 4.6143 -7.1827 -2.1038 19 9 2.5996 -6.5769 -2.9942 20 9 4.4268 -5.2373 -3.2870 21 6 2.5335 -4.3190 -1.1720 22 1 -0.4850 0.8401 0.0004 23 1 -0.1579 -3.4134 1.1912 24 1 0.9637 -2.5251 2.0390 25 1 2.6323 -3.5504 2.1066 26 1 4.2268 -5.4257 2.0446 27 1 2.0710 -4.0302 -2.1042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713768129.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = -133.469054 kcal Electronic energy + Delta-G solvation = -17567.425551 eV Core-core repulsion = 14102.435100 eV Total energy + Delta-G solvation = -3464.990450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.24054 -48.76808 -48.69994 -41.40323 -37.06252 -34.05055 -33.13911 -32.00577 -28.34286 -27.53120 -25.07335 -24.21772 -22.12973 -19.62708 -19.54577 -19.22106 -18.54784 -17.42594 -17.12958 -16.56124 -16.05109 -15.71284 -15.60301 -15.48595 -15.16011 -15.00308 -14.86716 -14.86462 -14.45448 -14.29821 -13.88323 -13.39594 -12.81043 -12.75145 -12.50179 -12.03738 -11.51612 -10.82677 -10.60529 -10.43156 -10.41994 -9.01821 -8.03500 -6.25641 -0.28255 0.18115 1.40956 1.43686 1.46588 1.54231 2.40277 2.44562 2.53572 2.87309 3.22050 3.31762 3.64422 3.87615 3.93789 4.08874 4.25589 4.39536 4.59058 4.93228 5.02854 5.47466 5.54004 5.70900 6.05932 6.57151 6.60377 7.04361 7.19681 7.47897 9.00047 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.006456 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.439352 B = 4336.318548 C = 4588.197433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.048 0.952 9 C 0.259 3.741 10 H 0.022 0.978 11 N -0.817 5.817 12 C -0.049 4.049 13 C -0.138 4.138 14 C 0.107 3.893 15 N -0.475 5.475 16 C 0.020 3.980 17 C 0.529 3.471 18 F -0.166 7.166 19 F -0.171 7.171 20 F -0.174 7.174 21 C -0.129 4.129 22 H 0.258 0.742 23 H 0.315 0.685 24 H 0.329 0.671 25 H 0.156 0.844 26 H 0.204 0.796 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -10.223 0.374 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.066 0.934 9 C 0.149 3.851 10 H 0.040 0.960 11 N -0.344 5.344 12 C -0.059 4.059 13 C -0.158 4.158 14 C -0.051 4.051 15 N -0.184 5.184 16 C -0.118 4.118 17 C 0.474 3.526 18 F -0.148 7.148 19 F -0.153 7.153 20 F -0.156 7.156 21 C -0.151 4.151 22 H 0.067 0.933 23 H 0.127 0.873 24 H 0.143 0.857 25 H 0.174 0.826 26 H 0.220 0.780 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.052 -10.144 0.070 11.812 hybrid contribution 0.221 0.736 -0.234 0.803 sum 6.273 -9.408 -0.164 11.309 Atomic orbital electron populations 1.70199 1.06953 1.26656 1.47172 1.25593 0.95360 1.01617 0.93735 0.85765 0.78841 0.80111 0.78014 1.20544 1.21000 1.19467 1.21016 0.92067 0.90587 1.54865 0.93388 1.17940 0.87484 0.88678 0.90987 0.95998 1.58937 1.28122 1.43393 1.03997 1.22096 0.96099 0.94984 0.92734 1.22405 0.96400 0.97287 0.99727 1.23271 0.94597 0.91489 0.95708 1.67198 1.23404 1.29439 0.98394 1.20882 0.99735 0.97787 0.93380 1.17792 0.74555 0.77132 0.83167 1.93196 1.71921 1.56446 1.93198 1.93214 1.47898 1.88870 1.85301 1.93223 1.81731 1.69888 1.70719 1.21770 0.97734 0.94892 1.00664 0.93337 0.87296 0.85703 0.82628 0.77955 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.43 12.77 21.45 0.27 -48.15 15 2 C 0.04 2.19 5.39 84.65 0.46 2.64 15 3 Si 0.95 41.66 29.54 68.60 2.03 43.69 15 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.55 -27.85 8.71 25.60 0.22 -27.62 15 8 H 0.05 2.46 7.74 -2.91 -0.02 2.44 15 9 C 0.26 11.71 2.88 43.43 0.13 11.83 15 10 H 0.02 1.13 8.04 -2.39 -0.02 1.11 15 11 N -0.82 -34.07 8.37 -174.96 -1.47 -35.54 15 12 C -0.05 -1.81 4.91 -19.67 -0.10 -1.91 15 13 C -0.14 -4.22 9.39 22.36 0.21 -4.01 15 14 C 0.11 2.87 11.18 84.67 0.95 3.82 15 15 N -0.47 -15.01 9.74 -183.89 -1.79 -16.80 15 16 C 0.02 0.66 6.26 42.55 0.27 0.93 15 17 C 0.53 16.11 3.32 71.24 0.24 16.35 15 18 F -0.17 -5.00 16.85 44.97 0.76 -4.24 15 19 F -0.17 -5.04 17.16 44.97 0.77 -4.26 15 20 F -0.17 -5.35 17.28 44.97 0.78 -4.58 15 21 C -0.13 -4.60 9.28 22.36 0.21 -4.40 15 22 H 0.26 13.70 8.31 -92.71 -0.77 12.93 15 23 H 0.32 11.60 9.06 -89.70 -0.81 10.79 15 24 H 0.33 12.51 7.43 -89.69 -0.67 11.85 15 25 H 0.16 4.20 6.78 -2.91 -0.02 4.18 15 26 H 0.20 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.14 4.84 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -58.28 257.83 3.69 -54.60 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.24 Total: 17.65 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 2.57 Total: -2.36 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.98 Total: -100.49 kcal Atomic # 9 Polarization: -15.39 SS G_CDS: 2.31 Total: -13.08 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -58.28 3.69 -54.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713768129.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.873 kcal (2) G-P(sol) polarization free energy of solvation -58.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds