Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47174 * 2 1 4 4 C 1.36940 * 120.00113 * 84.12637 * 3 2 1 5 5 H 1.08001 * 119.99912 * 321.22312 * 4 3 2 6 6 C 1.38817 * 119.99788 * 141.22241 * 4 3 2 7 7 N 1.31614 * 120.00275 * 341.58285 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 161.58634 * 6 4 3 9 9 H 1.48489 * 109.47427 * 59.99458 * 8 6 4 10 10 H 1.48494 * 109.46893 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46705 * 299.99364 * 8 6 4 12 12 C 1.46498 * 119.99969 * 264.12557 * 3 2 1 13 13 C 1.50702 * 109.47053 * 90.00015 * 12 3 2 14 14 S 1.76189 * 126.03779 * 270.02248 * 13 12 3 15 15 C 1.70972 * 90.29575 * 180.02562 * 14 13 12 16 16 N 1.29053 * 110.18288 * 0.02562 * 15 14 13 17 17 C 1.31821 * 117.11467 * 359.70738 * 16 15 14 18 18 Cl 1.73599 * 122.75993 * 180.30900 * 17 16 15 19 19 H 1.09000 * 109.47239 * 300.00018 * 1 2 3 20 20 H 1.09003 * 109.46887 * 60.00379 * 1 2 3 21 21 H 1.09003 * 109.47233 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47097 * 239.99452 * 2 1 3 23 23 H 1.09009 * 109.46662 * 119.99998 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.47072 * 210.00041 * 12 3 2 26 26 H 1.08998 * 109.47019 * 330.00059 * 12 3 2 27 27 H 1.08004 * 124.91192 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1322 2.0672 1.1797 5 1 1.3820 1.9490 1.9476 6 6 3.2118 2.9144 1.3885 7 7 4.2927 2.7982 0.6466 8 14 3.1305 4.2195 2.7226 9 1 2.9258 3.5676 4.0409 10 1 4.4012 4.9877 2.7415 11 1 1.9996 5.1411 2.4451 12 6 2.3850 2.0284 -1.2620 13 6 1.1781 2.7215 -1.8402 14 16 0.0052 2.0105 -2.9461 15 6 -0.8653 3.4816 -2.9826 16 7 -0.2885 4.3590 -2.2324 17 6 0.8060 3.9834 -1.6011 18 17 1.6940 5.0415 -0.5496 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8901 24 1 5.0472 3.3900 0.7927 25 1 3.1718 2.7605 -1.0798 26 1 2.7438 1.2768 -1.9651 27 1 -1.7671 3.6522 -3.5519 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721138173.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = 41.262979 kcal Electronic energy + Delta-G solvation = -14250.060350 eV Core-core repulsion = 11774.823611 eV Total energy + Delta-G solvation = -2475.236739 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58721 -37.83302 -37.23311 -33.81261 -32.57157 -30.16646 -27.76732 -26.04391 -24.54006 -22.26443 -20.90720 -19.37936 -18.40139 -17.16847 -16.39149 -16.02778 -15.54483 -15.35570 -15.19546 -14.58732 -14.16646 -13.54082 -13.27322 -13.03652 -12.89540 -12.64214 -12.45303 -12.30558 -12.06366 -11.77837 -11.76039 -11.60599 -10.69167 -10.45044 -10.06124 -9.55037 -8.57788 -7.85032 -5.45167 -0.19611 0.26082 0.69559 1.33180 1.42618 1.47696 1.61542 1.73647 2.48697 3.29742 3.67733 3.77233 4.20926 4.41606 4.45245 4.77424 4.85408 4.91391 4.98494 5.09755 5.30293 5.56933 5.60706 5.73985 6.48038 6.61554 7.16934 7.82562 8.34784 9.12537 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.012642 C = 0.009457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.508418 B = 2214.233087 C = 2960.075015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 N -0.582 5.582 4 C -0.259 4.259 5 H 0.044 0.956 6 C 0.009 3.991 7 N -0.900 5.900 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.291 1.291 11 H -0.274 1.274 12 C 0.207 3.793 13 C -0.201 4.201 14 S 0.186 5.814 15 C 0.016 3.984 16 N -0.498 5.498 17 C 0.076 3.924 18 Cl -0.026 7.026 19 H 0.028 0.972 20 H 0.052 0.948 21 H 0.070 0.930 22 H 0.054 0.946 23 H 0.038 0.962 24 H 0.253 0.747 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -2.755 -8.451 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 N -0.302 5.302 4 C -0.389 4.389 5 H 0.062 0.938 6 C -0.190 4.190 7 N -0.543 5.543 8 Si 0.735 3.265 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.200 1.200 12 C 0.078 3.922 13 C -0.326 4.326 14 S 0.436 5.564 15 C -0.282 4.282 16 N -0.214 5.214 17 C -0.081 4.081 18 Cl 0.002 6.998 19 H 0.047 0.953 20 H 0.071 0.929 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.409 -3.018 -8.756 12.510 hybrid contribution 0.598 1.795 1.649 2.510 sum -7.811 -1.223 -7.107 10.631 Atomic orbital electron populations 1.22276 0.97991 1.01101 1.00725 1.21053 0.93254 0.85075 0.99511 1.43877 1.75758 1.09147 1.01389 1.18846 1.02865 1.22726 0.94446 0.93840 1.25305 0.94051 1.01217 0.98471 1.69925 1.03697 1.38516 1.42192 0.86274 0.77072 0.81695 0.81493 1.20110 1.21653 1.20037 1.19508 0.90323 0.96660 0.85759 1.27380 1.06363 0.96482 1.02420 1.83477 1.16878 1.16201 1.39841 1.28710 1.05571 0.92075 1.01877 1.65719 1.08636 1.36774 1.10237 1.20429 0.95285 0.91119 1.01273 1.98372 1.72209 1.66087 1.63117 0.95315 0.92917 0.91070 0.92726 0.94326 0.93719 0.88565 0.92926 0.74065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 10.20 71.98 0.73 -4.68 15 2 C 0.14 5.31 6.44 86.38 0.56 5.87 15 3 N -0.58 -27.34 2.41 -706.32 -1.70 -29.04 15 4 C -0.26 -13.66 9.46 84.03 0.79 -12.86 15 5 H 0.04 2.39 7.90 -2.91 -0.02 2.37 15 6 C 0.01 0.48 4.02 84.86 0.34 0.82 15 7 N -0.90 -49.78 11.37 21.65 0.25 -49.53 15 8 Si 0.91 44.11 28.57 68.60 1.96 46.07 15 9 H -0.28 -13.10 7.11 99.48 0.71 -12.40 15 10 H -0.29 -14.14 7.11 99.48 0.71 -13.44 15 11 H -0.27 -13.35 7.11 99.48 0.71 -12.64 15 12 C 0.21 9.22 5.56 85.63 0.48 9.69 15 13 C -0.20 -7.94 6.09 24.66 0.15 -7.79 15 14 S 0.19 5.13 21.37 -56.49 -1.21 3.92 15 15 C 0.02 0.42 12.23 130.65 1.60 2.02 15 16 N -0.50 -18.41 10.55 -194.50 -2.05 -20.46 15 17 C 0.08 3.18 7.30 83.67 0.61 3.79 15 18 Cl -0.03 -1.18 26.36 -2.72 -0.07 -1.25 15 19 H 0.03 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.05 1.70 6.05 -2.39 -0.01 1.68 15 21 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.05 1.91 7.83 -2.39 -0.02 1.89 15 23 H 0.04 1.57 8.09 -2.38 -0.02 1.55 15 24 H 0.25 13.79 8.31 -92.71 -0.77 13.02 15 25 H 0.10 4.95 4.96 -2.38 -0.01 4.94 15 26 H 0.05 2.16 7.85 -2.39 -0.02 2.14 15 27 H 0.24 3.92 8.06 -2.91 -0.02 3.90 15 Total: -1.00 -61.09 258.58 3.61 -57.48 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.18 Total: -4.05 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.26 Total: -3.13 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -3.51 Total: -99.03 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.21 Total: 3.92 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -61.09 3.61 -57.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721138173.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.741 kcal (2) G-P(sol) polarization free energy of solvation -61.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds