Wall clock time and date at job start Mon Mar 30 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47100 * 2 1 4 4 C 1.53003 * 109.46928 * 120.00159 * 2 1 3 5 5 H 1.08997 * 110.70360 * 61.88308 * 4 2 1 6 6 C 1.51426 * 110.78973 * 185.42034 * 4 2 1 7 7 C 1.28883 * 117.49411 * 134.55005 * 6 4 2 8 8 C 1.51424 * 117.49905 * 0.02562 * 7 6 4 9 9 Cl 1.80300 * 110.79611 * 101.97534 * 8 7 6 10 10 S 1.83827 * 110.79424 * 298.54340 * 4 2 1 11 11 N 1.46500 * 109.46923 * 240.00087 * 2 1 3 12 12 C 1.46499 * 119.99948 * 300.00302 * 11 2 1 13 13 C 1.36939 * 119.99901 * 119.99881 * 11 2 1 14 14 H 1.07995 * 120.00158 * 23.22573 * 13 11 2 15 15 C 1.38813 * 119.99962 * 203.22129 * 13 11 2 16 16 N 1.31624 * 120.00130 * 11.66738 * 15 13 11 17 17 Si 1.86801 * 120.00130 * 191.66760 * 15 13 11 18 18 H 1.48500 * 109.46888 * 90.00056 * 17 15 13 19 19 H 1.48493 * 109.47172 * 210.00506 * 17 15 13 20 20 H 1.48498 * 109.46974 * 330.00408 * 17 15 13 21 21 H 1.08995 * 109.46763 * 299.99912 * 1 2 3 22 22 H 1.08998 * 109.46914 * 59.99727 * 1 2 3 23 23 H 1.09002 * 109.47100 * 180.02562 * 1 2 3 24 24 H 1.07992 * 121.25590 * 314.57327 * 6 4 2 25 25 H 1.07994 * 121.24953 * 179.97438 * 7 6 4 26 26 H 1.08997 * 110.79626 * 225.45623 * 8 7 6 27 27 H 1.08998 * 109.47378 * 94.00040 * 12 11 2 28 28 H 1.09005 * 109.46798 * 213.99847 * 12 11 2 29 29 H 1.09006 * 109.47208 * 333.99596 * 12 11 2 30 30 H 0.96998 * 120.00078 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7154 -1.7618 1.2529 6 6 3.5479 -0.6240 1.3482 7 6 4.0506 -0.3202 2.4954 8 6 3.0881 -0.0885 3.6412 9 17 3.0291 -1.5257 4.7283 10 16 1.4834 0.1416 2.7740 11 7 2.0184 -0.6906 -1.1962 12 6 1.6644 -2.0931 -1.4281 13 6 2.8056 -0.0251 -2.0976 14 1 3.3717 0.8399 -1.7850 15 6 2.8761 -0.4622 -3.4132 16 7 2.0234 -1.3628 -3.8540 17 14 4.1811 0.2275 -4.5580 18 1 5.4047 -0.6098 -4.4754 19 1 3.6700 0.2210 -5.9522 20 1 4.5060 1.6198 -4.1564 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.1784 -0.8021 0.4897 25 1 5.1181 -0.2349 2.6345 26 1 3.3584 0.8086 4.1982 27 1 0.7771 -2.1444 -2.0592 28 1 2.4926 -2.5997 -1.9237 29 1 1.4601 -2.5789 -0.4738 30 1 2.0724 -1.6681 -4.7734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725560333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:45 Heat of formation + Delta-G solvation = 33.908380 kcal Electronic energy + Delta-G solvation = -14231.170077 eV Core-core repulsion = 11793.728851 eV Total energy + Delta-G solvation = -2437.441226 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 247.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.61812 -36.14401 -34.91858 -32.40948 -29.53496 -27.61565 -26.09400 -25.24914 -23.16219 -19.75181 -18.64920 -17.14048 -16.66062 -15.36486 -15.13154 -14.83059 -14.10600 -13.42130 -13.23568 -12.72271 -12.52105 -12.34404 -12.12412 -11.43534 -11.09157 -10.93584 -10.78865 -10.64984 -10.48029 -10.46440 -10.33447 -10.01787 -9.99568 -9.78926 -9.18954 -8.64141 -7.72800 -6.85693 -5.80709 -3.28489 1.51346 1.77227 2.24014 2.80363 3.32827 3.39760 3.40901 4.42182 4.45444 4.89786 4.96074 5.30666 5.40761 5.50766 5.66186 5.88895 6.14200 6.19351 6.41278 6.47576 6.61004 6.67743 6.81607 6.93166 7.30041 7.66572 7.73752 8.30362 9.14238 9.75978 10.24848 11.23885 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.036503 B = 0.006477 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.881940 B = 4321.861869 C = 4625.575153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.195 3.805 3 H 0.075 0.925 4 C -0.030 4.030 5 H 0.111 0.889 6 C -0.081 4.081 7 C -0.208 4.208 8 C 0.066 3.934 9 Cl -0.169 7.169 10 S -0.240 6.240 11 N -0.587 5.587 12 C 0.160 3.840 13 C -0.261 4.261 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.904 5.904 17 Si 0.905 3.095 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.152 0.848 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.032 0.968 28 H 0.045 0.955 29 H -0.003 1.003 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 1.426 12.164 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 H 0.093 0.907 4 C -0.161 4.161 5 H 0.129 0.871 6 C -0.101 4.101 7 C -0.227 4.227 8 C -0.088 4.088 9 Cl -0.143 7.143 10 S -0.014 6.014 11 N -0.309 5.309 12 C 0.015 3.985 13 C -0.390 4.390 14 H 0.088 0.912 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.735 3.265 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.204 1.204 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.170 0.830 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.785 1.777 12.389 12.540 hybrid contribution 1.729 -0.416 -0.935 2.009 sum 2.514 1.361 11.454 11.805 Atomic orbital electron populations 1.22311 0.97542 1.01393 1.00699 1.20192 0.92260 0.95151 0.83979 0.90650 1.24177 0.94307 1.03076 0.94504 0.87124 1.23058 0.95784 0.92989 0.98286 1.22542 0.99984 1.07920 0.92302 1.25571 0.96009 0.92261 0.94992 1.98752 1.98549 1.47809 1.69234 1.88104 1.20608 1.75427 1.17246 1.43995 1.58131 1.08265 1.20497 1.20814 1.00208 0.83312 0.94116 1.19219 1.19083 1.11681 0.89020 0.91189 1.25036 0.98364 0.99257 0.96618 1.70067 1.35693 1.33374 1.15718 0.86251 0.81236 0.78703 0.80317 1.21467 1.21687 1.20420 0.93633 0.91969 0.93177 0.83011 0.84243 0.84747 0.94998 0.93663 0.98408 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.00 37.16 0.33 -2.62 16 2 C 0.19 3.78 2.33 -67.92 -0.16 3.62 16 3 H 0.08 1.52 7.87 -51.93 -0.41 1.11 16 4 C -0.03 -0.51 2.75 -27.52 -0.08 -0.59 16 5 H 0.11 1.96 6.67 -51.93 -0.35 1.61 16 6 C -0.08 -1.28 9.39 -35.10 -0.33 -1.61 16 7 C -0.21 -2.79 9.74 -35.10 -0.34 -3.13 16 8 C 0.07 0.87 4.50 36.36 0.16 1.03 16 9 Cl -0.17 -2.29 28.80 -51.86 -1.49 -3.79 16 10 S -0.24 -3.68 21.34 -107.50 -2.29 -5.97 16 11 N -0.59 -13.59 2.58 -173.47 -0.45 -14.04 16 12 C 0.16 3.72 8.00 59.85 0.48 4.20 16 13 C -0.26 -6.68 9.59 -15.06 -0.14 -6.83 16 14 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 15 C 0.01 0.17 5.12 -17.43 -0.09 0.08 16 16 N -0.90 -25.35 10.66 55.49 0.59 -24.76 16 17 Si 0.91 21.00 29.57 -169.99 -5.03 15.98 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H 0.04 0.76 7.08 -51.93 -0.37 0.39 16 22 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 24 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 25 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 28 H 0.04 1.13 7.24 -51.93 -0.38 0.76 16 29 H 0.00 -0.05 6.44 -51.93 -0.33 -0.39 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 273.59 15.07 4.12 4.12 Total: -1.00 -26.88 273.59 -8.56 -35.45 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.85 Total: -1.14 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.16 Total: -5.84 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.14 Total: -38.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.29 Total: -5.97 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.49 Total: -3.79 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.88 -8.56 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.355 kcal (2) G-P(sol) polarization free energy of solvation -26.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds