Wall clock time and date at job start Mon Mar 30 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47100 * 2 1 4 4 C 1.53003 * 109.46928 * 120.00159 * 2 1 3 5 5 H 1.08997 * 110.70360 * 61.88308 * 4 2 1 6 6 C 1.51426 * 110.78973 * 185.42034 * 4 2 1 7 7 C 1.28883 * 117.49411 * 134.55005 * 6 4 2 8 8 C 1.51424 * 117.49905 * 0.02562 * 7 6 4 9 9 Cl 1.80300 * 110.79611 * 101.97534 * 8 7 6 10 10 S 1.83827 * 110.79424 * 298.54340 * 4 2 1 11 11 N 1.46500 * 109.46923 * 240.00087 * 2 1 3 12 12 C 1.46499 * 119.99948 * 300.00302 * 11 2 1 13 13 C 1.36939 * 119.99901 * 119.99881 * 11 2 1 14 14 H 1.07995 * 120.00158 * 23.22573 * 13 11 2 15 15 C 1.38813 * 119.99962 * 203.22129 * 13 11 2 16 16 N 1.31624 * 120.00130 * 11.66738 * 15 13 11 17 17 Si 1.86801 * 120.00130 * 191.66760 * 15 13 11 18 18 H 1.48500 * 109.46888 * 90.00056 * 17 15 13 19 19 H 1.48493 * 109.47172 * 210.00506 * 17 15 13 20 20 H 1.48498 * 109.46974 * 330.00408 * 17 15 13 21 21 H 1.08995 * 109.46763 * 299.99912 * 1 2 3 22 22 H 1.08998 * 109.46914 * 59.99727 * 1 2 3 23 23 H 1.09002 * 109.47100 * 180.02562 * 1 2 3 24 24 H 1.07992 * 121.25590 * 314.57327 * 6 4 2 25 25 H 1.07994 * 121.24953 * 179.97438 * 7 6 4 26 26 H 1.08997 * 110.79626 * 225.45623 * 8 7 6 27 27 H 1.08998 * 109.47378 * 94.00040 * 12 11 2 28 28 H 1.09005 * 109.46798 * 213.99847 * 12 11 2 29 29 H 1.09006 * 109.47208 * 333.99596 * 12 11 2 30 30 H 0.96998 * 120.00078 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7154 -1.7618 1.2529 6 6 3.5479 -0.6240 1.3482 7 6 4.0506 -0.3202 2.4954 8 6 3.0881 -0.0885 3.6412 9 17 3.0291 -1.5257 4.7283 10 16 1.4834 0.1416 2.7740 11 7 2.0184 -0.6906 -1.1962 12 6 1.6644 -2.0931 -1.4281 13 6 2.8056 -0.0251 -2.0976 14 1 3.3717 0.8399 -1.7850 15 6 2.8761 -0.4622 -3.4132 16 7 2.0234 -1.3628 -3.8540 17 14 4.1811 0.2275 -4.5580 18 1 5.4047 -0.6098 -4.4754 19 1 3.6700 0.2210 -5.9522 20 1 4.5060 1.6198 -4.1564 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.1784 -0.8021 0.4897 25 1 5.1181 -0.2349 2.6345 26 1 3.3584 0.8086 4.1982 27 1 0.7771 -2.1444 -2.0592 28 1 2.4926 -2.5997 -1.9237 29 1 1.4601 -2.5789 -0.4738 30 1 2.0724 -1.6681 -4.7734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725560333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:44 Heat of formation + Delta-G solvation = 20.747118 kcal Electronic energy + Delta-G solvation = -14231.740792 eV Core-core repulsion = 11793.728851 eV Total energy + Delta-G solvation = -2438.011941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 247.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.08189 -37.42502 -36.25438 -34.17652 -31.33113 -28.89206 -28.03949 -26.50731 -24.99545 -21.31741 -19.91587 -18.93228 -18.04253 -17.07013 -16.37803 -16.13925 -15.75967 -15.07812 -14.70309 -14.27808 -14.03616 -13.88693 -13.40418 -13.06086 -12.87942 -12.70011 -12.38437 -12.19252 -12.12750 -12.09916 -11.79771 -11.60410 -11.53759 -11.06496 -10.64037 -10.38659 -9.01940 -8.72417 -7.81060 -5.30307 0.36729 0.63101 0.96425 1.48893 1.50011 1.58156 1.68382 2.52263 3.29037 3.34093 3.63984 3.77365 3.94846 3.99012 4.23609 4.59028 4.60841 4.77426 4.85128 4.94881 5.14358 5.27419 5.34189 5.38489 5.51059 5.66647 5.74087 6.33479 7.15820 7.85510 8.30391 9.22095 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.036503 B = 0.006477 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.881940 B = 4321.861869 C = 4625.575153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.195 3.805 3 H 0.068 0.932 4 C -0.024 4.024 5 H 0.100 0.900 6 C -0.110 4.110 7 C -0.179 4.179 8 C 0.070 3.930 9 Cl -0.166 7.166 10 S -0.246 6.246 11 N -0.598 5.598 12 C 0.179 3.821 13 C -0.258 4.258 14 H 0.075 0.925 15 C -0.049 4.049 16 N -0.938 5.938 17 Si 0.966 3.034 18 H -0.286 1.286 19 H -0.299 1.299 20 H -0.268 1.268 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.137 0.863 25 H 0.169 0.831 26 H 0.166 0.834 27 H 0.003 0.997 28 H 0.019 0.981 29 H 0.025 0.975 30 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 2.317 14.200 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.087 3.913 3 H 0.086 0.914 4 C -0.154 4.154 5 H 0.118 0.882 6 C -0.130 4.130 7 C -0.198 4.198 8 C -0.084 4.084 9 Cl -0.140 7.140 10 S -0.019 6.019 11 N -0.321 5.321 12 C 0.034 3.966 13 C -0.388 4.388 14 H 0.093 0.907 15 C -0.245 4.245 16 N -0.585 5.585 17 Si 0.794 3.206 18 H -0.213 1.213 19 H -0.226 1.226 20 H -0.192 1.192 21 H 0.084 0.916 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.155 0.845 25 H 0.186 0.814 26 H 0.183 0.817 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.858 2.689 14.472 14.836 hybrid contribution 1.392 -0.656 -1.391 2.074 sum 3.250 2.032 13.081 13.631 Atomic orbital electron populations 1.22186 0.96867 1.01220 1.00748 1.20258 0.92640 0.94738 0.83713 0.91374 1.23753 0.95325 1.02049 0.94313 0.88205 1.22882 0.94828 0.96273 0.99011 1.22806 1.01378 1.04352 0.91233 1.25772 0.94117 0.93406 0.95096 1.98763 1.98464 1.47854 1.68913 1.88094 1.22362 1.75151 1.16317 1.44108 1.58258 1.08282 1.21461 1.20491 0.97792 0.83764 0.94591 1.19533 1.18589 1.11294 0.89369 0.90738 1.25748 1.00373 1.00160 0.98176 1.70232 1.37539 1.35149 1.15560 0.85287 0.78845 0.78519 0.77913 1.21326 1.22629 1.19240 0.91574 0.93855 0.93444 0.84548 0.81379 0.81665 0.97899 0.96191 0.95648 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 9.00 71.98 0.65 -4.87 16 2 C 0.20 7.50 2.33 44.99 0.10 7.61 16 3 H 0.07 2.70 7.87 -2.39 -0.02 2.68 16 4 C -0.02 -0.79 2.75 30.08 0.08 -0.70 16 5 H 0.10 3.43 6.67 -2.39 -0.02 3.41 16 6 C -0.11 -3.27 9.39 27.99 0.26 -3.00 16 7 C -0.18 -4.18 9.74 27.99 0.27 -3.91 16 8 C 0.07 1.58 4.50 71.47 0.32 1.90 16 9 Cl -0.17 -3.97 28.80 -2.72 -0.08 -4.05 16 10 S -0.25 -6.91 21.34 -56.49 -1.21 -8.12 16 11 N -0.60 -27.99 2.58 -702.75 -1.82 -29.81 16 12 C 0.18 8.49 8.00 127.77 1.02 9.52 16 13 C -0.26 -13.29 9.59 84.03 0.81 -12.49 16 14 H 0.07 3.71 7.82 -2.91 -0.02 3.68 16 15 C -0.05 -2.66 5.12 84.86 0.43 -2.22 16 16 N -0.94 -54.10 10.66 21.65 0.23 -53.87 16 17 Si 0.97 43.59 29.57 68.60 2.03 45.62 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H 0.07 2.12 7.08 -2.39 -0.02 2.10 16 22 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.73 7.67 -2.39 -0.02 1.71 16 24 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 25 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 26 H 0.17 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.00 0.14 7.41 -2.39 -0.02 0.13 16 28 H 0.02 1.01 7.24 -2.38 -0.02 1.00 16 29 H 0.03 1.04 6.44 -2.38 -0.02 1.02 16 30 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -57.60 273.59 4.24 -53.36 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.12 Total: 5.03 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 3.96 Total: -8.17 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.58 Total: -83.68 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -6.91 SS G_CDS: -1.21 Total: -8.12 kcal Atomic # 17 Polarization: -3.97 SS G_CDS: -0.08 Total: -4.05 kcal Total: -57.60 4.24 -53.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.109 kcal (2) G-P(sol) polarization free energy of solvation -57.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds