Wall clock time and date at job start Mon Mar 30 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47022 * 2 1 4 4 C 1.52997 * 109.47364 * 120.00030 * 2 1 3 5 5 H 1.08999 * 110.70490 * 58.12238 * 4 2 1 6 6 C 1.51425 * 110.79535 * 294.57534 * 4 2 1 7 7 C 1.28874 * 117.49805 * 258.02335 * 6 4 2 8 8 C 1.51424 * 117.49880 * 359.97438 * 7 6 4 9 9 Cl 1.80300 * 110.79066 * 225.45200 * 8 7 6 10 10 S 1.83827 * 102.54139 * 343.71208 * 8 7 6 11 11 N 1.46497 * 109.47157 * 240.00175 * 2 1 3 12 12 C 1.46494 * 120.00022 * 300.00080 * 11 2 1 13 13 C 1.36942 * 120.00071 * 119.99794 * 11 2 1 14 14 H 1.07995 * 119.99928 * 23.11420 * 13 11 2 15 15 C 1.38814 * 119.99956 * 203.12148 * 13 11 2 16 16 N 1.31618 * 120.00030 * 13.07781 * 15 13 11 17 17 Si 1.86799 * 119.99900 * 193.07870 * 15 13 11 18 18 H 1.48500 * 109.47342 * 59.99511 * 17 15 13 19 19 H 1.48503 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47155 * 299.99895 * 17 15 13 21 21 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47508 * 299.99689 * 1 2 3 23 23 H 1.09003 * 109.47564 * 59.99771 * 1 2 3 24 24 H 1.08003 * 121.25161 * 77.99472 * 6 4 2 25 25 H 1.08007 * 121.24772 * 180.02562 * 7 6 4 26 26 H 1.08996 * 110.79313 * 101.97965 * 8 7 6 27 27 H 1.09002 * 109.47744 * 95.12902 * 12 11 2 28 28 H 1.09001 * 109.47299 * 335.12863 * 12 11 2 29 29 H 1.09004 * 109.47351 * 215.13132 * 12 11 2 30 30 H 0.97003 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6608 -1.7425 1.2864 6 6 1.6642 0.0421 2.5018 7 6 2.5822 0.7493 3.0656 8 6 3.9543 0.7529 2.4251 9 17 5.2419 0.5395 3.6691 10 16 3.8775 -0.7056 1.3087 11 7 2.0183 -0.6906 -1.1962 12 6 1.6644 -2.0931 -1.4280 13 6 2.8056 -0.0250 -2.0976 14 1 3.3702 0.8410 -1.7853 15 6 2.8777 -0.4634 -3.4127 16 7 2.0091 -1.3448 -3.8611 17 14 4.2075 0.1975 -4.5459 18 1 5.5432 -0.1291 -3.9850 19 1 4.0689 -0.4245 -5.8873 20 1 4.0681 1.6710 -4.6662 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.6642 -0.0040 2.9072 25 1 2.3807 1.3174 3.9618 26 1 4.1131 1.6684 1.8554 27 1 0.7891 -2.1448 -2.0756 28 1 1.4406 -2.5736 -0.4756 29 1 2.5002 -2.6046 -1.9055 30 1 2.0598 -1.6515 -4.7800 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725560336.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:47 Heat of formation + Delta-G solvation = 38.349586 kcal Electronic energy + Delta-G solvation = -14285.544822 eV Core-core repulsion = 11848.296182 eV Total energy + Delta-G solvation = -2437.248641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 247.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.72019 -36.13068 -35.05446 -32.17669 -29.43708 -27.45145 -25.99817 -25.51766 -23.08872 -19.82152 -18.59161 -17.13461 -16.67856 -15.34696 -14.91001 -14.73335 -13.94513 -13.68997 -13.13272 -12.84278 -12.54328 -12.20941 -11.81974 -11.45632 -11.31155 -10.84514 -10.72414 -10.56506 -10.49659 -10.39417 -10.27147 -10.14038 -9.85346 -9.68569 -9.18148 -8.50135 -7.28625 -6.74839 -5.68443 -3.13971 1.52300 2.00998 2.28376 2.74874 3.42931 3.48245 3.50773 4.36563 4.52537 4.82223 5.13188 5.37253 5.44252 5.53212 5.60158 5.70466 6.08371 6.14059 6.17926 6.33117 6.44984 6.69250 6.77898 6.89428 7.37161 7.73127 7.86658 8.42422 9.26183 9.88300 10.36598 11.36778 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.007905 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.332804 B = 3541.212851 C = 4222.346773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.192 3.808 3 H 0.068 0.932 4 C -0.040 4.040 5 H 0.111 0.889 6 C -0.116 4.116 7 C -0.183 4.183 8 C 0.053 3.947 9 Cl -0.154 7.154 10 S -0.196 6.196 11 N -0.583 5.583 12 C 0.162 3.838 13 C -0.243 4.243 14 H 0.068 0.932 15 C 0.001 3.999 16 N -0.910 5.910 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.284 1.284 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.061 0.939 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.033 0.967 28 H -0.005 1.005 29 H 0.041 0.959 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 3.294 13.216 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.081 3.919 3 H 0.087 0.913 4 C -0.171 4.171 5 H 0.129 0.871 6 C -0.137 4.137 7 C -0.202 4.202 8 C -0.101 4.101 9 Cl -0.128 7.128 10 S 0.033 5.967 11 N -0.303 5.303 12 C 0.017 3.983 13 C -0.372 4.372 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.555 5.555 17 Si 0.733 3.267 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.210 1.210 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.157 0.843 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.060 0.940 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.075 2.450 12.566 12.803 hybrid contribution -0.159 0.931 -0.075 0.948 sum -0.234 3.381 12.491 12.943 Atomic orbital electron populations 1.22308 0.97460 1.01336 1.00647 1.20297 0.91926 0.94919 0.84782 0.91343 1.24202 0.91718 1.03809 0.97419 0.87077 1.22860 1.00270 0.96102 0.94469 1.22700 0.92568 1.02979 1.01993 1.25598 0.89821 1.02887 0.91827 1.98727 1.56445 1.97885 1.59712 1.88621 1.10286 1.38620 1.59216 1.43853 1.57724 1.07977 1.20768 1.20777 1.00069 0.83509 0.93927 1.19116 1.18252 1.11265 0.88591 0.91392 1.24970 0.98398 0.99681 0.96586 1.70050 1.35235 1.34744 1.15493 0.86360 0.82121 0.78338 0.79900 1.20999 1.21792 1.21027 0.93136 0.94043 0.92017 0.84276 0.84368 0.85007 0.94878 0.98701 0.94009 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.02 37.16 0.34 -2.29 16 2 C 0.19 3.65 2.33 -67.93 -0.16 3.49 16 3 H 0.07 1.35 7.87 -51.92 -0.41 0.94 16 4 C -0.04 -0.66 2.68 -27.53 -0.07 -0.74 16 5 H 0.11 1.85 6.81 -51.93 -0.35 1.50 16 6 C -0.12 -1.48 8.74 -35.10 -0.31 -1.79 16 7 C -0.18 -2.24 9.74 -35.10 -0.34 -2.58 16 8 C 0.05 0.76 4.50 36.36 0.16 0.92 16 9 Cl -0.15 -2.15 28.80 -51.86 -1.49 -3.64 16 10 S -0.20 -3.56 22.31 -107.50 -2.40 -5.95 16 11 N -0.58 -13.89 2.48 -173.49 -0.43 -14.32 16 12 C 0.16 3.88 8.01 59.84 0.48 4.36 16 13 C -0.24 -6.50 9.58 -15.06 -0.14 -6.64 16 14 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 15 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 16 N -0.91 -26.31 10.72 55.49 0.59 -25.72 16 17 Si 0.90 22.06 29.57 -169.99 -5.03 17.03 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 22 H 0.04 0.55 7.38 -51.93 -0.38 0.17 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.14 1.40 7.94 -52.48 -0.42 0.98 16 25 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 26 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 28 H -0.01 -0.12 6.51 -51.93 -0.34 -0.45 16 29 H 0.04 1.11 7.35 -51.93 -0.38 0.72 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -28.89 274.24 -8.63 -37.52 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -3.87 Total: -3.75 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.14 Total: -5.30 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.16 Total: -40.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.40 Total: -5.95 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -1.49 Total: -3.64 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.89 -8.63 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560336.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.873 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds