Wall clock time and date at job start Mon Mar 30 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47022 * 2 1 4 4 C 1.52997 * 109.47364 * 120.00030 * 2 1 3 5 5 H 1.08999 * 110.70490 * 58.12238 * 4 2 1 6 6 C 1.51425 * 110.79535 * 294.57534 * 4 2 1 7 7 C 1.28874 * 117.49805 * 258.02335 * 6 4 2 8 8 C 1.51424 * 117.49880 * 359.97438 * 7 6 4 9 9 Cl 1.80300 * 110.79066 * 225.45200 * 8 7 6 10 10 S 1.83827 * 102.54139 * 343.71208 * 8 7 6 11 11 N 1.46497 * 109.47157 * 240.00175 * 2 1 3 12 12 C 1.46494 * 120.00022 * 300.00080 * 11 2 1 13 13 C 1.36942 * 120.00071 * 119.99794 * 11 2 1 14 14 H 1.07995 * 119.99928 * 23.11420 * 13 11 2 15 15 C 1.38814 * 119.99956 * 203.12148 * 13 11 2 16 16 N 1.31618 * 120.00030 * 13.07781 * 15 13 11 17 17 Si 1.86799 * 119.99900 * 193.07870 * 15 13 11 18 18 H 1.48500 * 109.47342 * 59.99511 * 17 15 13 19 19 H 1.48503 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47155 * 299.99895 * 17 15 13 21 21 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47508 * 299.99689 * 1 2 3 23 23 H 1.09003 * 109.47564 * 59.99771 * 1 2 3 24 24 H 1.08003 * 121.25161 * 77.99472 * 6 4 2 25 25 H 1.08007 * 121.24772 * 180.02562 * 7 6 4 26 26 H 1.08996 * 110.79313 * 101.97965 * 8 7 6 27 27 H 1.09002 * 109.47744 * 95.12902 * 12 11 2 28 28 H 1.09001 * 109.47299 * 335.12863 * 12 11 2 29 29 H 1.09004 * 109.47351 * 215.13132 * 12 11 2 30 30 H 0.97003 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6608 -1.7425 1.2864 6 6 1.6642 0.0421 2.5018 7 6 2.5822 0.7493 3.0656 8 6 3.9543 0.7529 2.4251 9 17 5.2419 0.5395 3.6691 10 16 3.8775 -0.7056 1.3087 11 7 2.0183 -0.6906 -1.1962 12 6 1.6644 -2.0931 -1.4280 13 6 2.8056 -0.0250 -2.0976 14 1 3.3702 0.8410 -1.7853 15 6 2.8777 -0.4634 -3.4127 16 7 2.0091 -1.3448 -3.8611 17 14 4.2075 0.1975 -4.5459 18 1 5.5432 -0.1291 -3.9850 19 1 4.0689 -0.4245 -5.8873 20 1 4.0681 1.6710 -4.6662 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.6642 -0.0040 2.9072 25 1 2.3807 1.3174 3.9618 26 1 4.1131 1.6684 1.8554 27 1 0.7891 -2.1448 -2.0756 28 1 1.4406 -2.5736 -0.4756 29 1 2.5002 -2.6046 -1.9055 30 1 2.0598 -1.6515 -4.7800 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725560336.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:47 Heat of formation + Delta-G solvation = 22.806286 kcal Electronic energy + Delta-G solvation = -14286.218830 eV Core-core repulsion = 11848.296182 eV Total energy + Delta-G solvation = -2437.922649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 247.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09011 -37.43238 -36.43735 -33.95457 -31.20050 -28.69797 -27.99261 -26.75041 -24.89720 -21.34416 -19.78238 -18.82857 -18.18050 -17.05842 -16.23762 -16.06529 -15.69150 -15.28633 -14.60948 -14.26032 -14.07358 -13.72428 -13.14600 -12.98700 -12.88442 -12.66247 -12.51142 -12.35486 -12.12975 -11.83860 -11.78608 -11.58131 -11.45060 -11.16723 -10.63487 -10.27424 -8.77514 -8.66538 -7.77140 -5.22937 0.37542 0.85579 1.10406 1.45729 1.49400 1.54647 1.60009 2.53608 3.28540 3.37313 3.60360 3.96253 3.98973 4.05812 4.27523 4.62275 4.65865 4.73908 4.84059 5.02910 5.19240 5.24535 5.36166 5.48170 5.52405 5.70938 5.74898 6.38798 7.20566 7.92357 8.35187 9.25954 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.007905 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.332804 B = 3541.212851 C = 4222.346773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.189 3.811 3 H 0.060 0.940 4 C -0.022 4.022 5 H 0.108 0.892 6 C -0.116 4.116 7 C -0.171 4.171 8 C 0.066 3.934 9 Cl -0.147 7.147 10 S -0.287 6.287 11 N -0.597 5.597 12 C 0.182 3.818 13 C -0.237 4.237 14 H 0.066 0.934 15 C -0.055 4.055 16 N -0.940 5.940 17 Si 0.957 3.043 18 H -0.286 1.286 19 H -0.297 1.297 20 H -0.274 1.274 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.037 0.963 24 H 0.180 0.820 25 H 0.176 0.824 26 H 0.138 0.862 27 H 0.008 0.992 28 H 0.025 0.975 29 H 0.005 0.995 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 4.638 15.633 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.079 3.921 3 H 0.079 0.921 4 C -0.152 4.152 5 H 0.126 0.874 6 C -0.136 4.136 7 C -0.190 4.190 8 C -0.088 4.088 9 Cl -0.121 7.121 10 S -0.058 6.058 11 N -0.319 5.319 12 C 0.036 3.964 13 C -0.368 4.368 14 H 0.084 0.916 15 C -0.249 4.249 16 N -0.588 5.588 17 Si 0.787 3.213 18 H -0.213 1.213 19 H -0.223 1.223 20 H -0.200 1.200 21 H 0.068 0.932 22 H 0.104 0.896 23 H 0.056 0.944 24 H 0.197 0.803 25 H 0.193 0.807 26 H 0.155 0.845 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.024 0.976 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.773 3.820 15.030 15.527 hybrid contribution 0.115 0.566 -0.692 0.902 sum -0.658 4.387 14.338 15.009 Atomic orbital electron populations 1.22174 0.95265 1.01659 1.01637 1.20492 0.93417 0.94308 0.83857 0.92149 1.23929 0.89433 1.03891 0.97997 0.87381 1.22978 1.02261 0.95559 0.92816 1.22941 0.90683 1.02730 1.02653 1.25635 0.91503 1.00354 0.91297 1.98731 1.56445 1.97826 1.59058 1.88915 1.13441 1.41615 1.61845 1.43998 1.57978 1.08015 1.21874 1.20420 0.97413 0.83986 0.94533 1.19351 1.17812 1.10622 0.89017 0.91615 1.25623 1.00422 1.00750 0.98116 1.70198 1.36869 1.36446 1.15266 0.85478 0.79724 0.78151 0.77960 1.21279 1.22322 1.20011 0.93152 0.89607 0.94401 0.80339 0.80726 0.84463 0.97373 0.95627 0.97580 0.94608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.02 71.98 0.65 -3.90 16 2 C 0.19 6.88 2.33 44.99 0.10 6.98 16 3 H 0.06 2.29 7.87 -2.38 -0.02 2.27 16 4 C -0.02 -0.67 2.68 30.08 0.08 -0.59 16 5 H 0.11 3.37 6.81 -2.39 -0.02 3.36 16 6 C -0.12 -2.42 8.74 28.00 0.24 -2.18 16 7 C -0.17 -3.43 9.74 28.00 0.27 -3.15 16 8 C 0.07 1.74 4.50 71.47 0.32 2.06 16 9 Cl -0.15 -3.77 28.80 -2.72 -0.08 -3.85 16 10 S -0.29 -10.19 22.31 -56.49 -1.26 -11.45 16 11 N -0.60 -28.61 2.48 -702.79 -1.75 -30.35 16 12 C 0.18 8.88 8.01 127.77 1.02 9.90 16 13 C -0.24 -12.87 9.58 84.03 0.81 -12.07 16 14 H 0.07 3.52 7.82 -2.91 -0.02 3.50 16 15 C -0.05 -3.10 5.10 84.86 0.43 -2.66 16 16 N -0.94 -56.03 10.72 21.65 0.23 -55.80 16 17 Si 0.96 46.24 29.57 68.60 2.03 48.27 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 H 0.05 1.56 7.67 -2.39 -0.02 1.54 16 22 H 0.09 1.91 7.38 -2.39 -0.02 1.89 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.18 2.42 7.94 -2.91 -0.02 2.40 16 25 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 27 H 0.01 0.43 7.34 -2.39 -0.02 0.41 16 28 H 0.03 1.06 6.51 -2.39 -0.02 1.05 16 29 H 0.01 0.30 7.35 -2.38 -0.02 0.28 16 30 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -64.41 274.24 4.23 -60.18 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.12 Total: -1.38 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 3.93 Total: -5.61 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.51 Total: -86.15 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -1.26 Total: -11.45 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.08 Total: -3.85 kcal Total: -64.41 4.23 -60.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560336.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.985 kcal (2) G-P(sol) polarization free energy of solvation -64.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds