Wall clock time and date at job start Mon Mar 30 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33786 * 125.09117 * 2 1 4 4 C 1.34906 * 111.37507 * 179.97438 * 3 2 1 5 5 C 1.38973 * 133.09734 * 179.97438 * 4 3 2 6 6 C 1.37838 * 119.97920 * 180.02562 * 5 4 3 7 7 C 1.38685 * 120.65248 * 0.02562 * 6 5 4 8 8 C 1.37849 * 120.19415 * 0.02562 * 7 6 5 9 9 C 1.39091 * 119.63169 * 359.97438 * 8 7 6 10 10 C 1.36205 * 125.08705 * 180.02562 * 2 1 3 11 11 C 1.46872 * 127.15312 * 0.02562 * 10 2 1 12 12 O 1.21603 * 120.00214 * 269.97712 * 11 10 2 13 13 O 1.34839 * 119.99998 * 89.97879 * 11 10 2 14 14 C 1.34883 * 117.00146 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99746 * 0.02562 * 14 13 11 16 16 C 1.38764 * 120.00097 * 179.97438 * 14 13 11 17 17 N 1.31446 * 120.00038 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00143 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46916 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47366 * 119.99739 * 18 16 14 21 21 H 1.48494 * 109.47228 * 240.00295 * 18 16 14 22 22 H 1.08995 * 109.46989 * 269.99626 * 1 2 3 23 23 H 1.08997 * 109.47113 * 29.99806 * 1 2 3 24 24 H 1.09000 * 109.46528 * 149.99455 * 1 2 3 25 25 H 1.08004 * 120.00802 * 0.06484 * 5 4 3 26 26 H 1.08004 * 119.67828 * 180.28514 * 6 5 4 27 27 H 1.07996 * 119.89831 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.18138 * 179.97438 * 8 7 6 29 29 H 0.96998 * 119.99867 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2761 1.0947 0.0000 4 6 3.5867 0.7748 0.0006 5 6 4.7498 1.5355 0.0003 6 6 5.9797 0.9133 0.0006 7 6 6.0721 -0.4705 0.0005 8 6 4.9294 -1.2416 -0.0004 9 6 3.6831 -0.6241 -0.0006 10 6 2.2899 -1.1145 -0.0005 11 6 1.8419 -2.5133 -0.0016 12 8 1.6565 -3.0932 1.0510 13 8 1.6363 -3.1544 -1.1699 14 6 1.2260 -4.4374 -1.1004 15 1 1.0764 -4.9051 -0.1385 16 6 0.9950 -5.1560 -2.2648 17 7 1.1765 -4.5866 -3.4355 18 14 0.4260 -6.9326 -2.1685 19 1 0.2987 -7.3351 -0.7448 20 1 -0.8909 -7.0678 -2.8412 21 1 1.4184 -7.8075 -2.8429 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3632 -0.8900 -0.5139 25 1 4.6899 2.6139 0.0006 26 1 6.8805 1.5092 0.0050 27 1 7.0421 -0.9453 0.0002 28 1 5.0016 -2.3192 -0.0009 29 1 1.0147 -5.0888 -4.2494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767640114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:57 Heat of formation + Delta-G solvation = -52.048104 kcal Electronic energy + Delta-G solvation = -17008.602695 eV Core-core repulsion = 14056.706912 eV Total energy + Delta-G solvation = -2951.895784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.28340 -38.79538 -37.73172 -35.18280 -33.02320 -32.13811 -31.05204 -30.22651 -27.19814 -25.51429 -23.07508 -22.74687 -21.38072 -19.56409 -17.79382 -17.45553 -16.74396 -16.16651 -15.71471 -15.24320 -14.43383 -14.36687 -14.28934 -13.73281 -13.55096 -12.96220 -12.75963 -12.53238 -12.17767 -12.01902 -11.63428 -11.61094 -11.22348 -10.79997 -10.44792 -10.41966 -10.04497 -9.65853 -9.20070 -8.62027 -8.46726 -7.85086 -6.44979 -4.13050 1.05588 1.48946 2.38263 2.78882 3.02885 3.17505 3.25198 3.35271 3.84183 3.95986 4.49092 4.58691 4.99760 5.04366 5.06952 5.31773 5.38635 5.45673 5.53861 5.63923 5.72308 5.93623 6.07955 6.33862 6.38525 6.49050 6.58613 6.77073 6.84792 7.32079 7.36396 7.89218 8.62033 9.02846 9.80497 10.72467 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028858 B = 0.006514 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.029981 B = 4297.406690 C = 4787.750648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.072 3.928 3 O -0.187 6.187 4 C 0.048 3.952 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.135 4.135 8 C -0.064 4.064 9 C -0.093 4.093 10 C -0.169 4.169 11 C 0.468 3.532 12 O -0.542 6.542 13 O -0.202 6.202 14 C -0.385 4.385 15 H 0.098 0.902 16 C 0.044 3.956 17 N -0.860 5.860 18 Si 0.943 3.057 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 10.359 4.034 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.024 3.976 3 O -0.088 6.088 4 C 0.002 3.998 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.154 4.154 8 C -0.082 4.082 9 C -0.094 4.094 10 C -0.171 4.171 11 C 0.314 3.686 12 O -0.439 6.439 13 O -0.109 6.109 14 C -0.461 4.461 15 H 0.116 0.884 16 C -0.161 4.161 17 N -0.496 5.496 18 Si 0.768 3.232 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.652 10.409 4.050 12.099 hybrid contribution -0.158 -0.990 -0.059 1.004 sum 4.494 9.419 3.992 11.174 Atomic orbital electron populations 1.20540 0.83827 1.05115 1.04217 1.22536 0.93807 0.82344 0.98948 1.83730 1.15096 1.33738 1.76268 1.19495 0.83048 0.93179 1.04109 1.19850 0.88040 0.99364 1.05326 1.20845 0.96185 0.94707 1.00100 1.21006 0.98118 0.93660 1.02569 1.20622 0.90012 1.00632 0.96926 1.19546 0.92914 0.92671 1.04317 1.19973 0.91821 0.92545 1.12810 1.19580 0.79913 0.85430 0.83648 1.90681 1.52444 1.67564 1.33209 1.84049 1.69945 1.26748 1.30108 1.21346 1.45480 0.84182 0.95081 0.88442 1.25370 0.96481 1.00250 0.94000 1.70019 1.44962 1.37232 0.97436 0.85606 0.78393 0.80197 0.79029 1.18838 1.20070 1.20093 0.89228 0.89770 0.88131 0.85149 0.84899 0.85248 0.85189 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.20 36.01 0.37 -0.84 15 2 C 0.07 1.36 7.30 -35.04 -0.26 1.11 15 3 O -0.19 -3.30 10.52 5.39 0.06 -3.24 15 4 C 0.05 0.85 7.39 -38.56 -0.28 0.56 15 5 C -0.11 -1.46 10.06 -39.46 -0.40 -1.86 15 6 C -0.10 -1.22 10.01 -39.56 -0.40 -1.61 15 7 C -0.14 -1.85 10.04 -39.56 -0.40 -2.25 15 8 C -0.06 -1.13 10.09 -39.41 -0.40 -1.53 15 9 C -0.09 -1.87 6.39 -104.97 -0.67 -2.54 15 10 C -0.17 -3.78 6.18 -103.27 -0.64 -4.42 15 11 C 0.47 12.42 7.28 34.22 0.25 12.67 15 12 O -0.54 -15.37 16.36 -19.35 -0.32 -15.69 15 13 O -0.20 -5.98 9.75 -22.01 -0.21 -6.19 15 14 C -0.38 -11.46 9.65 30.93 0.30 -11.16 15 15 H 0.10 2.91 6.86 -52.49 -0.36 2.55 15 16 C 0.04 1.23 5.49 -17.52 -0.10 1.13 15 17 N -0.86 -25.26 13.67 55.48 0.76 -24.50 15 18 Si 0.94 21.16 29.55 -169.99 -5.02 16.13 15 19 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 22 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.10 1.67 7.87 -51.93 -0.41 1.26 15 25 H 0.13 1.37 8.06 -52.48 -0.42 0.95 15 26 H 0.13 1.12 8.06 -52.48 -0.42 0.69 15 27 H 0.13 1.38 8.06 -52.49 -0.42 0.95 15 28 H 0.13 2.34 8.06 -52.49 -0.42 1.92 15 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 272.82 15.07 4.11 4.11 Total: -1.00 -34.46 272.82 -5.69 -40.14 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -2.44 Total: -0.03 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.62 Total: -10.74 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.76 Total: -24.50 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.47 Total: -25.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.46 -5.69 -40.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767640114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.903 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds