Wall clock time and date at job start Mon Mar 30 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33786 * 125.09117 * 2 1 4 4 C 1.34906 * 111.37507 * 179.97438 * 3 2 1 5 5 C 1.38973 * 133.09734 * 179.97438 * 4 3 2 6 6 C 1.37838 * 119.97920 * 180.02562 * 5 4 3 7 7 C 1.38685 * 120.65248 * 0.02562 * 6 5 4 8 8 C 1.37849 * 120.19415 * 0.02562 * 7 6 5 9 9 C 1.39091 * 119.63169 * 359.97438 * 8 7 6 10 10 C 1.36205 * 125.08705 * 180.02562 * 2 1 3 11 11 C 1.46872 * 127.15312 * 0.02562 * 10 2 1 12 12 O 1.21603 * 120.00214 * 269.97712 * 11 10 2 13 13 O 1.34839 * 119.99998 * 89.97879 * 11 10 2 14 14 C 1.34883 * 117.00146 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99746 * 0.02562 * 14 13 11 16 16 C 1.38764 * 120.00097 * 179.97438 * 14 13 11 17 17 N 1.31446 * 120.00038 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00143 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46916 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47366 * 119.99739 * 18 16 14 21 21 H 1.48494 * 109.47228 * 240.00295 * 18 16 14 22 22 H 1.08995 * 109.46989 * 269.99626 * 1 2 3 23 23 H 1.08997 * 109.47113 * 29.99806 * 1 2 3 24 24 H 1.09000 * 109.46528 * 149.99455 * 1 2 3 25 25 H 1.08004 * 120.00802 * 0.06484 * 5 4 3 26 26 H 1.08004 * 119.67828 * 180.28514 * 6 5 4 27 27 H 1.07996 * 119.89831 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.18138 * 179.97438 * 8 7 6 29 29 H 0.96998 * 119.99867 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2761 1.0947 0.0000 4 6 3.5867 0.7748 0.0006 5 6 4.7498 1.5355 0.0003 6 6 5.9797 0.9133 0.0006 7 6 6.0721 -0.4705 0.0005 8 6 4.9294 -1.2416 -0.0004 9 6 3.6831 -0.6241 -0.0006 10 6 2.2899 -1.1145 -0.0005 11 6 1.8419 -2.5133 -0.0016 12 8 1.6565 -3.0932 1.0510 13 8 1.6363 -3.1544 -1.1699 14 6 1.2260 -4.4374 -1.1004 15 1 1.0764 -4.9051 -0.1385 16 6 0.9950 -5.1560 -2.2648 17 7 1.1765 -4.5866 -3.4355 18 14 0.4260 -6.9326 -2.1685 19 1 0.2987 -7.3351 -0.7448 20 1 -0.8909 -7.0678 -2.8412 21 1 1.4184 -7.8075 -2.8429 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3632 -0.8900 -0.5139 25 1 4.6899 2.6139 0.0006 26 1 6.8805 1.5092 0.0050 27 1 7.0421 -0.9453 0.0002 28 1 5.0016 -2.3192 -0.0009 29 1 1.0147 -5.0888 -4.2494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767640114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:57 Heat of formation + Delta-G solvation = -73.989388 kcal Electronic energy + Delta-G solvation = -17009.554141 eV Core-core repulsion = 14056.706912 eV Total energy + Delta-G solvation = -2952.847229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.66492 -40.94345 -38.93039 -37.36133 -34.59684 -34.25454 -32.30233 -31.44863 -28.68607 -27.52757 -24.82186 -24.05697 -22.64097 -21.30040 -19.99180 -19.16183 -18.07840 -17.76213 -17.39431 -16.55918 -16.32889 -16.26499 -16.08572 -15.06100 -14.79893 -14.48620 -14.16150 -14.09740 -13.69541 -13.37879 -13.23634 -13.20537 -12.74619 -12.46055 -12.30018 -12.08969 -11.99638 -11.43987 -11.06912 -10.77371 -9.69567 -9.22655 -8.61453 -6.43287 -0.22934 0.26713 0.92475 1.10123 1.31786 1.43478 1.48481 1.52072 2.09063 2.62482 2.71632 2.88352 3.25659 3.68662 3.91580 4.06570 4.17166 4.24808 4.32696 4.47810 4.51901 4.69945 4.71235 4.90190 5.05327 5.12633 5.19289 5.32467 5.43406 5.59693 5.72444 6.01820 6.44428 6.81552 7.62539 8.59167 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028858 B = 0.006514 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.029981 B = 4297.406690 C = 4787.750648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.095 3.905 3 O -0.177 6.177 4 C 0.029 3.971 5 C -0.095 4.095 6 C -0.084 4.084 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.128 4.128 10 C -0.236 4.236 11 C 0.478 3.522 12 O -0.572 6.572 13 O -0.231 6.231 14 C -0.427 4.427 15 H 0.084 0.916 16 C 0.000 4.000 17 N -0.899 5.899 18 Si 1.022 2.978 19 H -0.263 1.263 20 H -0.255 1.255 21 H -0.258 1.258 22 H 0.112 0.888 23 H 0.123 0.877 24 H 0.076 0.924 25 H 0.172 0.828 26 H 0.188 0.812 27 H 0.164 0.836 28 H 0.105 0.895 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 12.128 3.891 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.045 3.955 3 O -0.078 6.078 4 C -0.017 4.017 5 C -0.113 4.113 6 C -0.101 4.101 7 C -0.134 4.134 8 C -0.126 4.126 9 C -0.129 4.129 10 C -0.238 4.238 11 C 0.326 3.674 12 O -0.470 6.470 13 O -0.138 6.138 14 C -0.503 4.503 15 H 0.102 0.898 16 C -0.201 4.201 17 N -0.535 5.535 18 Si 0.840 3.160 19 H -0.187 1.187 20 H -0.179 1.179 21 H -0.182 1.182 22 H 0.130 0.870 23 H 0.141 0.859 24 H 0.095 0.905 25 H 0.189 0.811 26 H 0.205 0.795 27 H 0.181 0.819 28 H 0.123 0.877 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.894 12.211 3.904 14.110 hybrid contribution -0.401 -1.394 0.008 1.451 sum 5.493 10.817 3.912 12.747 Atomic orbital electron populations 1.20722 0.81384 1.05783 1.05859 1.23029 0.95105 0.81690 0.95670 1.83735 1.15455 1.32625 1.75968 1.20031 0.83734 0.92452 1.05483 1.20506 0.86761 1.01253 1.02778 1.21505 0.97575 0.94104 0.96945 1.21471 0.97862 0.94643 0.99386 1.20724 0.91201 1.00147 1.00504 1.19782 0.92380 0.94384 1.06384 1.19984 0.94590 0.90972 1.18302 1.20280 0.77843 0.86826 0.82473 1.90612 1.53533 1.68982 1.33905 1.84071 1.70875 1.27103 1.31788 1.21597 1.48187 0.84969 0.95510 0.89786 1.26659 0.95311 1.05279 0.92860 1.70103 1.45264 1.39702 0.98459 0.84520 0.78923 0.73229 0.79325 1.18715 1.17879 1.18239 0.86954 0.85882 0.90525 0.81064 0.79478 0.81857 0.87686 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.45 10.20 71.24 0.73 -1.72 15 2 C 0.09 3.66 7.30 25.21 0.18 3.85 15 3 O -0.18 -6.10 10.52 -3.62 -0.04 -6.14 15 4 C 0.03 0.99 7.39 22.93 0.17 1.16 15 5 C -0.10 -2.21 10.06 22.35 0.22 -1.98 15 6 C -0.08 -1.62 10.01 22.28 0.22 -1.40 15 7 C -0.12 -2.90 10.04 22.28 0.22 -2.67 15 8 C -0.11 -3.96 10.09 22.38 0.23 -3.74 15 9 C -0.13 -5.35 6.39 -20.09 -0.13 -5.48 15 10 C -0.24 -11.25 6.18 -18.99 -0.12 -11.37 15 11 C 0.48 27.42 7.28 70.08 0.51 27.93 15 12 O -0.57 -34.97 16.36 19.50 0.32 -34.65 15 13 O -0.23 -14.71 9.75 9.95 0.10 -14.62 15 14 C -0.43 -27.00 9.65 67.95 0.66 -26.35 15 15 H 0.08 5.36 6.86 -2.91 -0.02 5.34 15 16 C 0.00 -0.01 5.49 84.88 0.47 0.46 15 17 N -0.90 -54.26 13.67 21.63 0.30 -53.96 15 18 Si 1.02 43.87 29.55 68.60 2.03 45.90 15 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 20 H -0.25 -10.06 7.11 99.48 0.71 -9.35 15 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 22 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 23 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.08 2.69 7.87 -2.39 -0.02 2.67 15 25 H 0.17 2.59 8.06 -2.91 -0.02 2.57 15 26 H 0.19 1.72 8.06 -2.91 -0.02 1.70 15 27 H 0.16 2.89 8.06 -2.91 -0.02 2.87 15 28 H 0.10 4.20 8.06 -2.91 -0.02 4.18 15 29 H 0.28 15.23 8.31 -92.71 -0.77 14.46 15 Total: -1.00 -82.11 272.82 7.24 -74.87 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.18 Total: 9.92 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 3.36 Total: -21.32 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.30 Total: -53.96 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: 0.38 Total: -55.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -82.11 7.24 -74.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767640114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.878 kcal (2) G-P(sol) polarization free energy of solvation -82.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds