Wall clock time and date at job start Mon Mar 30 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40296 * 126.64684 * 2 1 4 4 C 1.35190 * 107.12892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.60359 * 179.97438 * 4 3 2 6 6 F 1.39899 * 109.47075 * 299.99925 * 5 4 3 7 7 F 1.39902 * 109.46910 * 60.00430 * 5 4 3 8 8 O 1.33938 * 108.79221 * 359.76847 * 4 3 2 9 9 C 1.34936 * 109.37094 * 0.38083 * 8 4 3 10 10 C 1.46411 * 125.99239 * 179.88739 * 9 8 4 11 11 O 1.21659 * 119.99669 * 179.69258 * 10 9 8 12 12 O 1.34886 * 120.00026 * 359.68425 * 10 9 8 13 13 C 1.34844 * 116.99857 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00211 * 0.02562 * 13 12 10 15 15 C 1.38798 * 120.00142 * 179.73069 * 13 12 10 16 16 N 1.31429 * 120.00108 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46911 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99567 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99810 * 17 15 13 21 21 H 1.09001 * 109.47334 * 269.95630 * 1 2 3 22 22 H 1.08994 * 109.47324 * 29.95867 * 1 2 3 23 23 H 1.09005 * 109.46668 * 149.96402 * 1 2 3 24 24 H 1.07997 * 126.43672 * 0.07211 * 3 2 1 25 25 H 1.08998 * 109.47152 * 179.97438 * 5 4 3 26 26 H 0.96995 * 120.00271 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3444 1.1256 0.0000 4 6 3.6186 0.6740 -0.0006 5 6 4.8549 1.5358 -0.0013 6 9 4.8598 2.3433 -1.1437 7 9 4.8609 2.3435 1.1409 8 8 3.6016 -0.6653 0.0042 9 6 2.3231 -1.0967 -0.0006 10 6 1.8866 -2.4942 0.0000 11 8 0.6995 -2.7607 0.0010 12 8 2.8005 -3.4863 -0.0007 13 6 2.3316 -4.7506 -0.0007 14 1 1.2670 -4.9317 -0.0004 15 6 3.2173 -5.8192 -0.0071 16 7 4.5130 -5.5989 -0.0137 17 14 2.5678 -7.5707 -0.0077 18 1 1.0829 -7.5480 -0.0001 19 1 3.0462 -8.2757 -1.2239 20 1 3.0578 -8.2807 1.2010 21 1 -0.3634 -0.0008 1.0277 22 1 -0.3633 0.8903 -0.5132 23 1 -0.3633 -0.8897 -0.5144 24 1 2.0301 2.1589 0.0011 25 1 5.7406 0.9005 -0.0012 26 1 5.1319 -6.3457 -0.0185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859785261.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:32 Heat of formation + Delta-G solvation = -165.854218 kcal Electronic energy + Delta-G solvation = -17342.776401 eV Core-core repulsion = 13831.716084 eV Total energy + Delta-G solvation = -3511.060317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.17665 -47.18026 -42.49846 -38.95438 -35.58828 -33.80215 -32.37074 -31.33318 -27.71401 -26.94947 -25.18723 -21.98728 -21.32206 -19.67474 -18.02062 -17.70659 -17.52190 -17.25714 -17.01996 -16.02106 -15.18822 -14.47977 -14.36324 -14.03026 -13.81421 -13.54336 -13.26547 -13.15011 -12.85598 -12.70651 -12.42750 -11.90585 -11.74622 -11.38650 -11.16692 -10.65762 -10.50602 -10.06509 -9.60305 -9.36992 -8.78630 -8.46652 -6.62445 -4.25093 1.16932 2.32563 2.45247 3.05530 3.09440 3.17536 3.67229 3.74726 3.87308 4.09561 4.41804 4.64271 4.82681 4.90240 4.97613 5.44317 5.61683 5.68825 5.96236 6.10008 6.29735 6.45866 6.61767 7.11259 7.20880 7.70941 8.43373 8.84047 9.58286 10.53948 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.005934 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.331279 B = 4717.173447 C = 5426.692168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.126 4.126 3 C -0.155 4.155 4 C -0.102 4.102 5 C 0.362 3.638 6 F -0.187 7.187 7 F -0.187 7.187 8 O -0.131 6.131 9 C 0.018 3.982 10 C 0.459 3.541 11 O -0.527 6.527 12 O -0.191 6.191 13 C -0.375 4.375 14 H 0.104 0.896 15 C 0.043 3.957 16 N -0.847 5.847 17 Si 0.950 3.050 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.089 0.911 24 H 0.158 0.842 25 H 0.135 0.865 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 11.201 -0.017 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.174 4.174 4 C -0.155 4.155 5 C 0.308 3.692 6 F -0.168 7.168 7 F -0.168 7.168 8 O -0.026 6.026 9 C -0.034 4.034 10 C 0.307 3.693 11 O -0.426 6.426 12 O -0.097 6.097 13 C -0.450 4.450 14 H 0.122 0.878 15 C -0.164 4.164 16 N -0.483 5.483 17 Si 0.773 3.227 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.199 1.199 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.108 0.892 24 H 0.175 0.825 25 H 0.152 0.848 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.056 10.834 -0.017 10.834 hybrid contribution -0.227 -0.507 0.016 0.556 sum -0.283 10.327 -0.001 10.331 Atomic orbital electron populations 1.20350 0.87854 1.03428 1.02733 1.20475 0.97822 0.90105 1.04411 1.21421 0.91047 1.00230 1.04733 1.22632 0.96830 0.82910 1.13092 1.19042 0.95698 0.82881 0.71568 1.93048 1.97423 1.75476 1.50844 1.93049 1.97422 1.75473 1.50867 1.84130 1.29215 1.19525 1.69741 1.21488 0.80241 0.93417 1.08214 1.18804 0.84874 0.83294 0.82282 1.90719 1.16969 1.82264 1.52697 1.83992 1.36873 1.15512 1.73345 1.21496 0.94634 0.77521 1.51393 0.87838 1.25505 0.94911 1.00263 0.95706 1.70009 1.01511 1.33040 1.43702 0.85509 0.79448 0.79351 0.78367 1.18602 1.19877 1.19876 0.91092 0.91843 0.89202 0.82453 0.84818 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 9.81 36.00 0.35 -1.00 15 2 C -0.13 -2.27 6.20 -104.40 -0.65 -2.92 15 3 C -0.15 -2.40 10.72 -39.89 -0.43 -2.83 15 4 C -0.10 -1.65 6.75 -35.39 -0.24 -1.89 15 5 C 0.36 4.50 5.76 36.01 0.21 4.71 15 6 F -0.19 -2.38 17.32 2.25 0.04 -2.34 15 7 F -0.19 -2.38 17.32 2.25 0.04 -2.34 15 8 O -0.13 -2.65 10.67 4.66 0.05 -2.60 15 9 C 0.02 0.40 7.18 -36.85 -0.26 0.13 15 10 C 0.46 11.76 7.86 34.02 0.27 12.03 15 11 O -0.53 -13.78 13.99 -19.39 -0.27 -14.05 15 12 O -0.19 -5.54 9.75 -23.50 -0.23 -5.77 15 13 C -0.38 -10.81 9.65 30.94 0.30 -10.52 15 14 H 0.10 2.94 6.86 -52.49 -0.36 2.58 15 15 C 0.04 1.16 5.50 -17.52 -0.10 1.07 15 16 N -0.85 -24.16 13.67 55.49 0.76 -23.40 15 17 Si 0.95 20.39 29.55 -169.99 -5.02 15.37 15 18 H -0.26 -5.52 7.11 56.52 0.40 -5.11 15 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.09 1.58 6.45 -51.93 -0.33 1.25 15 24 H 0.16 1.94 8.06 -52.49 -0.42 1.51 15 25 H 0.13 1.31 8.14 -51.93 -0.42 0.88 15 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 257.14 15.07 3.88 3.88 Total: -1.00 -31.40 257.14 -2.83 -34.23 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.55 Total: -1.22 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.76 Total: -23.40 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.45 Total: -22.43 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.08 Total: -4.69 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.40 -2.83 -34.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859785261.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.627 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds