Wall clock time and date at job start Mon Mar 30 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.52995 * 109.46917 * 240.00432 * 2 1 3 5 5 C 1.50697 * 109.47065 * 119.99938 * 2 1 3 6 6 C 1.38406 * 119.82423 * 60.00045 * 5 2 1 7 7 C 1.37886 * 120.17218 * 180.02562 * 6 5 2 8 8 C 1.39850 * 119.82350 * 359.97438 * 7 6 5 9 9 C 1.47166 * 120.16746 * 180.02562 * 8 7 6 10 10 O 1.21254 * 120.00434 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47294 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47548 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99722 * 16 14 12 19 19 H 1.48500 * 109.46790 * 239.99650 * 16 14 12 20 20 C 1.39844 * 119.66049 * 0.27210 * 8 7 6 21 21 C 1.37891 * 119.82139 * 359.47196 * 20 8 7 22 22 H 1.09009 * 109.47404 * 300.00015 * 1 2 3 23 23 H 1.09001 * 109.47214 * 59.99470 * 1 2 3 24 24 H 1.08995 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46951 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47373 * 300.00020 * 3 2 1 27 27 H 1.09004 * 109.47385 * 60.00651 * 3 2 1 28 28 H 1.09008 * 109.46820 * 300.00094 * 4 2 1 29 29 H 1.08999 * 109.47661 * 59.99533 * 4 2 1 30 30 H 1.08995 * 109.47174 * 180.02562 * 4 2 1 31 31 H 1.07998 * 119.91320 * 0.02562 * 6 5 2 32 32 H 1.08005 * 120.08595 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46953 * 299.99616 * 11 9 8 34 34 H 1.09000 * 109.47318 * 59.99214 * 11 9 8 35 35 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.09409 * 179.70007 * 20 8 7 37 37 H 1.07996 * 119.91414 * 180.25212 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6957 -2.0355 1.4459 7 6 2.1509 -2.6923 2.5695 8 6 2.9551 -2.0161 3.4925 9 6 3.4456 -2.7099 4.6940 10 8 3.1523 -3.8707 4.8862 11 6 4.3116 -1.9774 5.6864 12 6 4.6762 -2.9056 6.8163 13 1 4.3165 -3.9239 6.8160 14 6 5.4682 -2.4544 7.8508 15 7 5.9057 -1.2141 7.8513 16 14 5.9196 -3.6047 9.2517 17 1 5.3055 -4.9361 9.0164 18 1 7.3963 -3.7454 9.3204 19 1 5.4153 -3.0468 10.5322 20 6 3.2866 -0.6758 3.2703 21 6 2.8279 -0.0344 2.1391 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9564 0.8901 28 1 1.6765 -1.7489 -1.2493 29 1 1.6765 -0.2074 -2.1392 30 1 3.1299 -0.7216 -1.2491 31 1 1.0749 -2.5564 0.7320 32 1 1.8871 -3.7262 2.7365 33 1 5.2200 -1.6335 5.1917 34 1 3.7663 -1.1202 6.0813 35 1 6.4632 -0.8969 8.5790 36 1 3.9032 -0.1454 3.9809 37 1 3.0863 0.9995 1.9640 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:23 Heat of formation + Delta-G solvation = -38.179156 kcal Electronic energy + Delta-G solvation = -17149.951087 eV Core-core repulsion = 14470.322895 eV Total energy + Delta-G solvation = -2679.628192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87787 -38.16965 -35.89252 -32.97259 -31.10591 -30.33747 -28.59280 -27.44562 -27.40212 -24.52548 -22.84393 -21.80256 -19.68325 -18.78873 -16.74419 -16.10125 -15.29506 -14.96737 -14.52774 -14.42187 -14.32630 -13.88058 -13.72890 -13.29831 -13.05343 -12.70570 -12.61461 -12.06938 -11.96219 -11.93773 -11.81967 -11.30954 -11.20356 -11.03454 -10.77560 -10.72918 -10.63310 -10.46817 -10.00997 -9.23812 -8.72219 -8.48170 -8.46868 -8.39799 -6.05614 -4.05873 1.13702 1.65053 3.18644 3.32970 3.40102 3.48331 4.21124 4.44773 4.48688 4.63459 4.86229 5.00457 5.15943 5.19286 5.21094 5.32465 5.40995 5.45179 5.60668 5.65537 5.67780 5.71256 5.78786 5.85708 5.91776 6.09726 6.14973 6.15052 6.22366 6.45737 6.68906 6.73795 6.88552 7.17196 7.24568 7.35122 7.94142 8.23119 8.68253 9.03779 9.59130 11.06591 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047741 B = 0.004396 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.352322 B = 6367.221525 C = 6757.216175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.057 4.057 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.159 4.159 9 C 0.389 3.611 10 O -0.463 6.463 11 C -0.022 4.022 12 C -0.515 4.515 13 H 0.073 0.927 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.067 4.067 21 C -0.138 4.138 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.261 0.739 36 H 0.138 0.862 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 5.593 -17.091 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.057 4.057 6 C -0.152 4.152 7 C -0.089 4.089 8 C -0.160 4.160 9 C 0.268 3.732 10 O -0.339 6.339 11 C -0.058 4.058 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.085 4.085 21 C -0.155 4.155 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.155 0.845 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.541 5.096 -16.885 19.596 hybrid contribution 0.346 -0.388 0.790 0.946 sum -8.194 4.708 -16.094 18.664 Atomic orbital electron populations 1.21888 0.93731 1.02101 1.01805 1.19528 0.95687 0.95121 0.92819 1.21972 1.01395 0.94918 1.01883 1.21887 1.01389 1.00208 0.96041 1.19950 0.96528 0.93916 0.95301 1.20847 1.01861 0.94413 0.98050 1.21425 0.94683 1.00016 0.92749 1.21148 1.00923 0.95539 0.98426 1.23404 0.77831 0.87708 0.84287 1.90352 1.50263 1.18595 1.74659 1.19543 0.95268 0.97354 0.93650 1.21238 1.30714 0.98616 1.04773 0.90903 1.24999 0.95834 0.95257 0.98361 1.69965 1.35665 1.15413 1.32860 0.86424 0.78067 0.81199 0.81740 1.19512 1.20968 1.20975 1.21638 0.96783 0.93596 0.96498 1.21139 0.99385 1.00359 0.94659 0.92390 0.92476 0.92403 0.92087 0.92540 0.92085 0.92408 0.92477 0.92385 0.86260 0.85399 0.92822 0.92817 0.92953 0.84463 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.28 37.16 0.31 -0.90 16 2 C -0.03 -0.30 0.85 -155.67 -0.13 -0.44 16 3 C -0.14 -1.24 7.13 37.16 0.26 -0.98 16 4 C -0.14 -1.21 8.28 37.15 0.31 -0.90 16 5 C -0.06 -0.72 4.77 -104.50 -0.50 -1.21 16 6 C -0.13 -1.80 8.68 -39.65 -0.34 -2.15 16 7 C -0.07 -1.17 9.60 -39.11 -0.38 -1.54 16 8 C -0.16 -2.99 5.87 -105.07 -0.62 -3.61 16 9 C 0.39 9.02 7.11 -30.68 -0.22 8.80 16 10 O -0.46 -11.86 15.45 5.58 0.09 -11.77 16 11 C -0.02 -0.55 4.07 -29.03 -0.12 -0.67 16 12 C -0.52 -15.03 8.92 -34.44 -0.31 -15.34 16 13 H 0.07 2.20 6.75 -52.48 -0.35 1.84 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 16 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.07 -1.10 9.47 -39.11 -0.37 -1.47 16 21 C -0.14 -1.87 8.95 -39.65 -0.36 -2.23 16 22 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 23 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 25 H 0.06 0.53 7.51 -51.92 -0.39 0.14 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 7.50 -51.93 -0.39 0.14 16 28 H 0.06 0.50 7.37 -51.92 -0.38 0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.33 7.07 -52.49 -0.37 0.96 16 32 H 0.13 2.10 7.65 -52.48 -0.40 1.70 16 33 H 0.05 1.39 8.09 -51.93 -0.42 0.97 16 34 H 0.05 1.39 8.08 -51.93 -0.42 0.97 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.14 2.24 7.05 -52.48 -0.37 1.87 16 37 H 0.13 1.44 5.87 -52.49 -0.31 1.13 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -31.42 306.40 -7.57 -38.99 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.44 Total: -2.14 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.55 Total: -21.11 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.42 -7.57 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.810 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds