Wall clock time and date at job start Mon Mar 30 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.52995 * 109.46917 * 240.00432 * 2 1 3 5 5 C 1.50697 * 109.47065 * 119.99938 * 2 1 3 6 6 C 1.38406 * 119.82423 * 60.00045 * 5 2 1 7 7 C 1.37886 * 120.17218 * 180.02562 * 6 5 2 8 8 C 1.39850 * 119.82350 * 359.97438 * 7 6 5 9 9 C 1.47166 * 120.16746 * 180.02562 * 8 7 6 10 10 O 1.21254 * 120.00434 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47294 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47548 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99722 * 16 14 12 19 19 H 1.48500 * 109.46790 * 239.99650 * 16 14 12 20 20 C 1.39844 * 119.66049 * 0.27210 * 8 7 6 21 21 C 1.37891 * 119.82139 * 359.47196 * 20 8 7 22 22 H 1.09009 * 109.47404 * 300.00015 * 1 2 3 23 23 H 1.09001 * 109.47214 * 59.99470 * 1 2 3 24 24 H 1.08995 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46951 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47373 * 300.00020 * 3 2 1 27 27 H 1.09004 * 109.47385 * 60.00651 * 3 2 1 28 28 H 1.09008 * 109.46820 * 300.00094 * 4 2 1 29 29 H 1.08999 * 109.47661 * 59.99533 * 4 2 1 30 30 H 1.08995 * 109.47174 * 180.02562 * 4 2 1 31 31 H 1.07998 * 119.91320 * 0.02562 * 6 5 2 32 32 H 1.08005 * 120.08595 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46953 * 299.99616 * 11 9 8 34 34 H 1.09000 * 109.47318 * 59.99214 * 11 9 8 35 35 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.09409 * 179.70007 * 20 8 7 37 37 H 1.07996 * 119.91414 * 180.25212 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6957 -2.0355 1.4459 7 6 2.1509 -2.6923 2.5695 8 6 2.9551 -2.0161 3.4925 9 6 3.4456 -2.7099 4.6940 10 8 3.1523 -3.8707 4.8862 11 6 4.3116 -1.9774 5.6864 12 6 4.6762 -2.9056 6.8163 13 1 4.3165 -3.9239 6.8160 14 6 5.4682 -2.4544 7.8508 15 7 5.9057 -1.2141 7.8513 16 14 5.9196 -3.6047 9.2517 17 1 5.3055 -4.9361 9.0164 18 1 7.3963 -3.7454 9.3204 19 1 5.4153 -3.0468 10.5322 20 6 3.2866 -0.6758 3.2703 21 6 2.8279 -0.0344 2.1391 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9564 0.8901 28 1 1.6765 -1.7489 -1.2493 29 1 1.6765 -0.2074 -2.1392 30 1 3.1299 -0.7216 -1.2491 31 1 1.0749 -2.5564 0.7320 32 1 1.8871 -3.7262 2.7365 33 1 5.2200 -1.6335 5.1917 34 1 3.7663 -1.1202 6.0813 35 1 6.4632 -0.8969 8.5790 36 1 3.9032 -0.1454 3.9809 37 1 3.0863 0.9995 1.9640 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:23 Heat of formation + Delta-G solvation = -54.776893 kcal Electronic energy + Delta-G solvation = -17150.670819 eV Core-core repulsion = 14470.322895 eV Total energy + Delta-G solvation = -2680.347924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13061 -39.75002 -36.98275 -35.16575 -32.44458 -31.72772 -30.38840 -28.18181 -28.05205 -26.34503 -24.36392 -23.03963 -21.02092 -19.99565 -18.67020 -17.70190 -16.92455 -16.23313 -16.13071 -15.81794 -15.61321 -15.08428 -15.00887 -14.57239 -14.28246 -14.15223 -13.64148 -13.56341 -13.24552 -12.84473 -12.83647 -12.73543 -12.60451 -12.48657 -12.34227 -12.09517 -11.79414 -11.65768 -11.46766 -11.32776 -10.65553 -10.33396 -9.92513 -9.66875 -8.27601 -6.36434 -0.23472 0.45086 1.37291 1.37706 1.52730 1.59319 2.38371 2.86572 3.07129 3.34713 3.65127 3.78427 4.05993 4.12344 4.15466 4.38921 4.45422 4.50626 4.69059 4.84352 4.84427 4.89462 4.95803 5.02959 5.05191 5.08466 5.11660 5.18259 5.23881 5.27978 5.37709 5.48890 5.49647 5.51801 5.66449 5.69617 5.98205 6.09752 6.73853 6.84301 7.32685 8.84611 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047741 B = 0.004396 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.352322 B = 6367.221525 C = 6757.216175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.041 4.041 6 C -0.127 4.127 7 C -0.076 4.076 8 C -0.191 4.191 9 C 0.393 3.607 10 O -0.499 6.499 11 C -0.018 4.018 12 C -0.547 4.547 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.923 5.923 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.073 4.073 21 C -0.134 4.134 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 6.569 -18.966 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.204 4.204 4 C -0.195 4.195 5 C -0.041 4.041 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.192 4.192 9 C 0.274 3.726 10 O -0.378 6.378 11 C -0.055 4.055 12 C -0.585 4.585 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.563 5.563 16 Si 0.788 3.212 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.091 4.091 21 C -0.152 4.152 22 H 0.069 0.931 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.168 0.832 32 H 0.140 0.860 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.340 6.096 -18.770 21.834 hybrid contribution 0.558 -0.597 1.257 1.499 sum -8.783 5.499 -17.513 20.349 Atomic orbital electron populations 1.21902 0.92629 1.02483 1.02513 1.19641 0.96462 0.95556 0.91465 1.22002 1.01396 0.94169 1.02827 1.21901 1.01006 1.00467 0.96154 1.20436 0.94329 0.93555 0.95767 1.21131 1.01319 0.94825 0.97167 1.21467 0.94596 0.99948 0.93412 1.20721 1.04011 0.96623 0.97798 1.23367 0.76797 0.87124 0.85270 1.90317 1.51804 1.19875 1.75843 1.19411 0.95489 0.96822 0.93767 1.21470 1.31835 0.98496 1.06693 0.92770 1.25812 0.95368 0.96925 1.00677 1.70040 1.35759 1.16691 1.33800 0.85413 0.78274 0.78792 0.78677 1.19918 1.19600 1.19613 1.21649 0.97060 0.92748 0.97630 1.21426 0.98757 1.01504 0.93464 0.93060 0.90493 0.92238 0.92185 0.90701 0.92183 0.92241 0.90494 0.93055 0.83248 0.86006 0.93653 0.93640 0.92323 0.85269 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.28 71.98 0.60 -1.29 16 2 C -0.03 -0.49 0.85 -52.93 -0.05 -0.53 16 3 C -0.15 -1.98 7.13 71.98 0.51 -1.47 16 4 C -0.14 -1.89 8.28 71.98 0.60 -1.29 16 5 C -0.04 -0.92 4.77 -19.79 -0.09 -1.02 16 6 C -0.13 -3.15 8.68 22.23 0.19 -2.96 16 7 C -0.08 -2.51 9.60 22.58 0.22 -2.29 16 8 C -0.19 -7.38 5.87 -20.15 -0.12 -7.50 16 9 C 0.39 19.22 7.11 28.03 0.20 19.42 16 10 O -0.50 -27.03 15.45 -2.95 -0.05 -27.07 16 11 C -0.02 -0.98 4.07 29.10 0.12 -0.86 16 12 C -0.55 -33.23 8.92 25.60 0.23 -33.00 16 13 H 0.05 3.43 6.75 -2.91 -0.02 3.41 16 14 C 0.01 0.64 5.46 84.65 0.46 1.10 16 15 N -0.92 -55.04 13.29 21.45 0.28 -54.76 16 16 Si 0.96 46.00 29.54 68.60 2.03 48.03 16 17 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 C -0.07 -2.41 9.47 22.58 0.21 -2.19 16 21 C -0.13 -3.41 8.95 22.23 0.20 -3.21 16 22 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.80 7.37 -2.39 -0.02 0.78 16 25 H 0.06 0.83 7.51 -2.38 -0.02 0.82 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.83 7.50 -2.38 -0.02 0.82 16 28 H 0.06 0.80 7.37 -2.38 -0.02 0.78 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.15 2.82 7.07 -2.91 -0.02 2.80 16 32 H 0.12 4.10 7.65 -2.91 -0.02 4.08 16 33 H 0.05 2.49 8.09 -2.39 -0.02 2.47 16 34 H 0.05 2.49 8.08 -2.39 -0.02 2.47 16 35 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.13 4.40 7.05 -2.91 -0.02 4.38 16 37 H 0.15 3.09 5.87 -2.91 -0.02 3.07 16 Total: -1.00 -69.40 306.40 6.59 -62.81 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.04 Total: 8.09 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.28 Total: -37.10 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.28 Total: -54.76 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -69.40 6.59 -62.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.033 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds