Wall clock time and date at job start Mon Mar 30 2020 05:28:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 119.99798 * 2 1
4 4 H 1.48511 * 109.46897 * 90.00366 * 3 2 1
5 5 H 1.48498 * 109.47241 * 330.00661 * 3 2 1
6 6 H 1.48500 * 109.46997 * 210.00114 * 3 2 1
7 7 C 1.37873 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99681 * 182.45726 * 7 2 1
9 9 C 1.50698 * 120.00029 * 2.46365 * 7 2 1
10 10 C 1.53007 * 112.84714 * 290.05215 * 9 7 2
11 11 O 1.42901 * 109.47237 * 304.41248 * 10 9 7
12 12 C 1.42895 * 113.99955 * 179.97438 * 11 10 9
13 13 C 1.50705 * 109.47091 * 180.02562 * 12 11 10
14 14 C 1.38237 * 119.99753 * 269.73003 * 13 12 11
15 15 C 1.38243 * 119.99463 * 179.76477 * 14 13 12
16 16 C 1.38231 * 120.00050 * 0.51013 * 15 14 13
17 17 C 1.38244 * 119.99851 * 359.74105 * 16 15 14
18 18 C 1.38228 * 120.00005 * 0.02562 * 17 16 15
19 19 C 1.53780 * 113.61510 * 158.75206 * 9 7 2
20 20 C 1.53784 * 87.07984 * 220.01679 * 19 9 7
21 21 C 1.53777 * 113.61831 * 61.24709 * 9 7 2
22 22 H 0.96994 * 120.00044 * 174.85099 * 1 2 3
23 23 H 1.09001 * 109.46991 * 64.41219 * 10 9 7
24 24 H 1.08994 * 109.47202 * 184.41232 * 10 9 7
25 25 H 1.08997 * 109.47578 * 300.00039 * 12 11 10
26 26 H 1.09001 * 109.46798 * 60.00146 * 12 11 10
27 27 H 1.07997 * 120.00639 * 359.97438 * 14 13 12
28 28 H 1.08001 * 119.99689 * 180.22865 * 15 14 13
29 29 H 1.07999 * 120.00412 * 179.72484 * 16 15 14
30 30 H 1.07997 * 119.99521 * 179.97438 * 17 16 15
31 31 H 1.08005 * 119.99778 * 179.97438 * 18 17 16
32 32 H 1.09002 * 113.61598 * 334.56289 * 19 9 7
33 33 H 1.09003 * 113.61725 * 105.46686 * 19 9 7
34 34 H 1.09008 * 113.61007 * 270.88229 * 20 19 9
35 35 H 1.08998 * 113.61698 * 139.98281 * 20 19 9
36 36 H 1.08996 * 113.61583 * 254.52832 * 21 9 7
37 37 H 1.08998 * 113.61202 * 25.44025 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0464 1.4002
5 1 1.4465 2.6527 -0.6999
6 1 3.5467 1.4402 -0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 3.0838 -1.1944 0.0396
9 6 1.2521 -2.4985 -0.0572
10 6 0.4876 -2.7999 1.2335
11 8 1.3915 -2.7725 2.3399
12 6 0.7753 -3.0424 3.6006
13 6 1.8152 -2.9873 4.6901
14 6 2.5025 -4.1320 5.0481
15 6 3.4597 -4.0804 6.0441
16 6 3.7222 -2.8864 6.6892
17 6 3.0311 -1.7427 6.3347
18 6 2.0774 -1.7933 5.3355
19 6 2.1003 -3.6774 -0.5626
20 6 0.8569 -4.1351 -1.3433
21 6 0.4038 -2.6656 -1.3289
22 1 -0.4850 -0.8366 -0.0754
23 1 -0.2887 -2.0489 1.3798
24 1 0.0299 -3.7866 1.1627
25 1 0.0052 -2.2962 3.7959
26 1 0.3233 -4.0340 3.5791
27 1 2.2940 -5.0659 4.5474
28 1 3.9993 -4.9739 6.3212
29 1 4.4669 -2.8469 7.4704
30 1 3.2359 -0.8100 6.8391
31 1 1.5372 -0.8999 5.0588
32 1 2.9304 -3.3759 -1.2014
33 1 2.4003 -4.3688 0.2249
34 1 0.2046 -4.7987 -0.7755
35 1 1.0821 -4.5129 -2.3406
36 1 -0.6657 -2.5402 -1.1600
37 1 0.7701 -2.0875 -2.1772
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000038302188.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:11
Heat of formation + Delta-G solvation = -8.169059 kcal
Electronic energy + Delta-G solvation = -17745.175181 eV
Core-core repulsion = 15066.848324 eV
Total energy + Delta-G solvation = -2678.326857 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 246.136 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.13254 -38.45056 -36.18110 -32.30810 -31.58853 -30.71712 -27.30676 -25.47293
-24.88625 -24.13455 -22.38521 -21.76588 -21.03720 -17.94806 -16.92780 -16.59541
-15.66186 -15.38297 -15.11063 -14.42825 -14.08336 -13.67698 -13.47417 -13.21222
-13.05313 -12.60857 -12.38361 -11.83352 -11.57498 -11.18422 -11.07772 -10.81802
-10.69969 -10.57853 -10.25373 -10.19581 -9.96429 -9.47057 -9.01148 -8.77468
-8.72477 -8.60105 -8.23264 -8.11894 -6.18829 -3.90695 1.48622 1.58806
3.49895 3.52548 3.68326 3.87894 4.60947 4.68920 5.02240 5.10082
5.21171 5.35752 5.44899 5.54847 5.66625 5.71176 5.78683 5.83052
5.86647 5.88747 6.16488 6.19781 6.24592 6.29325 6.41618 6.59538
6.63186 6.65838 6.71853 6.83822 6.87176 6.87668 7.09393 7.17016
7.32262 7.63540 8.14241 8.39477 8.56171 9.01197 9.77999 11.16614
Molecular weight = 246.14amu
Principal moments of inertia in cm(-1)
A = 0.019387 B = 0.007322 C = 0.005869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1443.915564 B = 3823.247812 C = 4769.423261
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C 0.023 3.977
3 Si 1.065 2.935
4 H -0.290 1.290
5 H -0.287 1.287
6 H -0.290 1.290
7 C -0.561 4.561
8 H 0.049 0.951
9 C 0.044 3.956
10 C 0.089 3.911
11 O -0.354 6.354
12 C 0.097 3.903
13 C -0.074 4.074
14 C -0.102 4.102
15 C -0.127 4.127
16 C -0.123 4.123
17 C -0.125 4.125
18 C -0.096 4.096
19 C -0.124 4.124
20 C -0.152 4.152
21 C -0.119 4.119
22 H 0.270 0.730
23 H 0.049 0.951
24 H 0.014 0.986
25 H 0.050 0.950
26 H 0.044 0.956
27 H 0.120 0.880
28 H 0.119 0.881
29 H 0.118 0.882
30 H 0.120 0.880
31 H 0.124 0.876
32 H 0.070 0.930
33 H 0.046 0.954
34 H 0.063 0.937
35 H 0.050 0.950
36 H 0.045 0.955
37 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.570 -7.041 9.167 11.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.181 4.181
3 Si 0.894 3.106
4 H -0.216 1.216
5 H -0.213 1.213
6 H -0.216 1.216
7 C -0.599 4.599
8 H 0.067 0.933
9 C 0.044 3.956
10 C 0.013 3.987
11 O -0.273 6.273
12 C 0.019 3.981
13 C -0.075 4.075
14 C -0.120 4.120
15 C -0.145 4.145
16 C -0.141 4.141
17 C -0.143 4.143
18 C -0.114 4.114
19 C -0.161 4.161
20 C -0.189 4.189
21 C -0.157 4.157
22 H 0.082 0.918
23 H 0.067 0.933
24 H 0.032 0.968
25 H 0.068 0.932
26 H 0.062 0.938
27 H 0.138 0.862
28 H 0.137 0.863
29 H 0.136 0.864
30 H 0.139 0.861
31 H 0.142 0.858
32 H 0.088 0.912
33 H 0.065 0.935
34 H 0.082 0.918
35 H 0.068 0.932
36 H 0.064 0.936
37 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 2.569 -5.347 9.199 10.946
hybrid contribution -0.086 -1.707 -0.008 1.709
sum 2.484 -7.054 9.191 11.849
Atomic orbital electron populations
1.70769 1.06749 1.31087 1.47287 1.25634 0.96555 1.02110 0.93752
0.83609 0.74753 0.75552 0.76674 1.21641 1.21271 1.21612 1.21686
0.93874 0.90467 1.53891 0.93282 1.19336 0.93152 0.94905 0.88219
1.22465 0.92366 0.96348 0.87545 1.88074 1.34590 1.91844 1.12815
1.21212 0.93092 0.99086 0.84668 1.19738 0.97966 0.93650 0.96096
1.21047 0.95857 0.98148 0.96988 1.21072 0.98418 0.97919 0.97130
1.21105 0.99810 0.93095 1.00137 1.21123 0.96807 0.98305 0.98024
1.21152 0.97532 0.97450 0.95252 1.22824 0.96165 0.98564 0.98554
1.22953 0.99267 0.97606 0.99119 1.22908 0.98499 0.93924 1.00332
0.91753 0.93312 0.96761 0.93187 0.93804 0.86218 0.86308 0.86411
0.86149 0.85756 0.91158 0.93485 0.91819 0.93160 0.93583 0.90624
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.18 13.15 55.43 0.73 -26.45 16
2 C 0.02 0.64 5.32 -17.82 -0.09 0.55 16
3 Si 1.06 25.80 29.90 -169.99 -5.08 20.71 16
4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
7 C -0.56 -15.84 7.99 -34.44 -0.28 -16.12 16
8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16
9 C 0.04 1.10 0.46 -154.85 -0.07 1.03 16
10 C 0.09 2.10 4.96 37.16 0.18 2.28 16
11 O -0.35 -8.26 9.97 -35.23 -0.35 -8.61 16
12 C 0.10 1.79 6.06 36.01 0.22 2.01 16
13 C -0.07 -1.27 5.51 -104.62 -0.58 -1.85 16
14 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16
15 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16
16 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16
17 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16
18 C -0.10 -1.56 9.70 -39.59 -0.38 -1.94 16
19 C -0.12 -2.71 7.22 -25.92 -0.19 -2.90 16
20 C -0.15 -2.96 7.73 -25.92 -0.20 -3.17 16
21 C -0.12 -2.71 5.94 -25.92 -0.15 -2.86 16
22 H 0.27 7.78 4.49 -40.82 -0.18 7.60 16
23 H 0.05 1.23 6.47 -51.93 -0.34 0.89 16
24 H 0.01 0.30 7.31 -51.93 -0.38 -0.08 16
25 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16
26 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16
27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16
28 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16
29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16
30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16
31 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16
32 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16
33 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16
34 H 0.06 1.15 7.61 -51.92 -0.40 0.76 16
35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
36 H 0.05 1.04 7.42 -51.93 -0.39 0.66 16
37 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16
LS Contribution 305.08 15.07 4.60 4.60
Total: -1.00 -30.87 305.08 -8.75 -39.62
By element:
Atomic # 1 Polarization: 6.69 SS G_CDS: -5.52 Total: 1.17 kcal
Atomic # 6 Polarization: -27.92 SS G_CDS: -3.12 Total: -31.04 kcal
Atomic # 7 Polarization: -27.18 SS G_CDS: 0.73 Total: -26.45 kcal
Atomic # 8 Polarization: -8.26 SS G_CDS: -0.35 Total: -8.61 kcal
Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -30.87 -8.75 -39.62 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000038302188.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.454 kcal
(2) G-P(sol) polarization free energy of solvation -30.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds