Wall clock time and date at job start Mon Mar 30 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48511 * 109.46897 * 90.00366 * 3 2 1 5 5 H 1.48498 * 109.47241 * 330.00661 * 3 2 1 6 6 H 1.48500 * 109.46997 * 210.00114 * 3 2 1 7 7 C 1.37873 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 182.45726 * 7 2 1 9 9 C 1.50698 * 120.00029 * 2.46365 * 7 2 1 10 10 C 1.53007 * 112.84714 * 290.05215 * 9 7 2 11 11 O 1.42901 * 109.47237 * 304.41248 * 10 9 7 12 12 C 1.42895 * 113.99955 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47091 * 180.02562 * 12 11 10 14 14 C 1.38237 * 119.99753 * 269.73003 * 13 12 11 15 15 C 1.38243 * 119.99463 * 179.76477 * 14 13 12 16 16 C 1.38231 * 120.00050 * 0.51013 * 15 14 13 17 17 C 1.38244 * 119.99851 * 359.74105 * 16 15 14 18 18 C 1.38228 * 120.00005 * 0.02562 * 17 16 15 19 19 C 1.53780 * 113.61510 * 158.75206 * 9 7 2 20 20 C 1.53784 * 87.07984 * 220.01679 * 19 9 7 21 21 C 1.53777 * 113.61831 * 61.24709 * 9 7 2 22 22 H 0.96994 * 120.00044 * 174.85099 * 1 2 3 23 23 H 1.09001 * 109.46991 * 64.41219 * 10 9 7 24 24 H 1.08994 * 109.47202 * 184.41232 * 10 9 7 25 25 H 1.08997 * 109.47578 * 300.00039 * 12 11 10 26 26 H 1.09001 * 109.46798 * 60.00146 * 12 11 10 27 27 H 1.07997 * 120.00639 * 359.97438 * 14 13 12 28 28 H 1.08001 * 119.99689 * 180.22865 * 15 14 13 29 29 H 1.07999 * 120.00412 * 179.72484 * 16 15 14 30 30 H 1.07997 * 119.99521 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.99778 * 179.97438 * 18 17 16 32 32 H 1.09002 * 113.61598 * 334.56289 * 19 9 7 33 33 H 1.09003 * 113.61725 * 105.46686 * 19 9 7 34 34 H 1.09008 * 113.61007 * 270.88229 * 20 19 9 35 35 H 1.08998 * 113.61698 * 139.98281 * 20 19 9 36 36 H 1.08996 * 113.61583 * 254.52832 * 21 9 7 37 37 H 1.08998 * 113.61202 * 25.44025 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4002 5 1 1.4465 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0838 -1.1944 0.0396 9 6 1.2521 -2.4985 -0.0572 10 6 0.4876 -2.7999 1.2335 11 8 1.3915 -2.7725 2.3399 12 6 0.7753 -3.0424 3.6006 13 6 1.8152 -2.9873 4.6901 14 6 2.5025 -4.1320 5.0481 15 6 3.4597 -4.0804 6.0441 16 6 3.7222 -2.8864 6.6892 17 6 3.0311 -1.7427 6.3347 18 6 2.0774 -1.7933 5.3355 19 6 2.1003 -3.6774 -0.5626 20 6 0.8569 -4.1351 -1.3433 21 6 0.4038 -2.6656 -1.3289 22 1 -0.4850 -0.8366 -0.0754 23 1 -0.2887 -2.0489 1.3798 24 1 0.0299 -3.7866 1.1627 25 1 0.0052 -2.2962 3.7959 26 1 0.3233 -4.0340 3.5791 27 1 2.2940 -5.0659 4.5474 28 1 3.9993 -4.9739 6.3212 29 1 4.4669 -2.8469 7.4704 30 1 3.2359 -0.8100 6.8391 31 1 1.5372 -0.8999 5.0588 32 1 2.9304 -3.3759 -1.2014 33 1 2.4003 -4.3688 0.2249 34 1 0.2046 -4.7987 -0.7755 35 1 1.0821 -4.5129 -2.3406 36 1 -0.6657 -2.5402 -1.1600 37 1 0.7701 -2.0875 -2.1772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038302188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:11 Heat of formation + Delta-G solvation = -8.169059 kcal Electronic energy + Delta-G solvation = -17745.175181 eV Core-core repulsion = 15066.848324 eV Total energy + Delta-G solvation = -2678.326857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13254 -38.45056 -36.18110 -32.30810 -31.58853 -30.71712 -27.30676 -25.47293 -24.88625 -24.13455 -22.38521 -21.76588 -21.03720 -17.94806 -16.92780 -16.59541 -15.66186 -15.38297 -15.11063 -14.42825 -14.08336 -13.67698 -13.47417 -13.21222 -13.05313 -12.60857 -12.38361 -11.83352 -11.57498 -11.18422 -11.07772 -10.81802 -10.69969 -10.57853 -10.25373 -10.19581 -9.96429 -9.47057 -9.01148 -8.77468 -8.72477 -8.60105 -8.23264 -8.11894 -6.18829 -3.90695 1.48622 1.58806 3.49895 3.52548 3.68326 3.87894 4.60947 4.68920 5.02240 5.10082 5.21171 5.35752 5.44899 5.54847 5.66625 5.71176 5.78683 5.83052 5.86647 5.88747 6.16488 6.19781 6.24592 6.29325 6.41618 6.59538 6.63186 6.65838 6.71853 6.83822 6.87176 6.87668 7.09393 7.17016 7.32262 7.63540 8.14241 8.39477 8.56171 9.01197 9.77999 11.16614 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.007322 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.915564 B = 3823.247812 C = 4769.423261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.023 3.977 3 Si 1.065 2.935 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.561 4.561 8 H 0.049 0.951 9 C 0.044 3.956 10 C 0.089 3.911 11 O -0.354 6.354 12 C 0.097 3.903 13 C -0.074 4.074 14 C -0.102 4.102 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.096 4.096 19 C -0.124 4.124 20 C -0.152 4.152 21 C -0.119 4.119 22 H 0.270 0.730 23 H 0.049 0.951 24 H 0.014 0.986 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -7.041 9.167 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.894 3.106 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.599 4.599 8 H 0.067 0.933 9 C 0.044 3.956 10 C 0.013 3.987 11 O -0.273 6.273 12 C 0.019 3.981 13 C -0.075 4.075 14 C -0.120 4.120 15 C -0.145 4.145 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.114 4.114 19 C -0.161 4.161 20 C -0.189 4.189 21 C -0.157 4.157 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.569 -5.347 9.199 10.946 hybrid contribution -0.086 -1.707 -0.008 1.709 sum 2.484 -7.054 9.191 11.849 Atomic orbital electron populations 1.70769 1.06749 1.31087 1.47287 1.25634 0.96555 1.02110 0.93752 0.83609 0.74753 0.75552 0.76674 1.21641 1.21271 1.21612 1.21686 0.93874 0.90467 1.53891 0.93282 1.19336 0.93152 0.94905 0.88219 1.22465 0.92366 0.96348 0.87545 1.88074 1.34590 1.91844 1.12815 1.21212 0.93092 0.99086 0.84668 1.19738 0.97966 0.93650 0.96096 1.21047 0.95857 0.98148 0.96988 1.21072 0.98418 0.97919 0.97130 1.21105 0.99810 0.93095 1.00137 1.21123 0.96807 0.98305 0.98024 1.21152 0.97532 0.97450 0.95252 1.22824 0.96165 0.98564 0.98554 1.22953 0.99267 0.97606 0.99119 1.22908 0.98499 0.93924 1.00332 0.91753 0.93312 0.96761 0.93187 0.93804 0.86218 0.86308 0.86411 0.86149 0.85756 0.91158 0.93485 0.91819 0.93160 0.93583 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 13.15 55.43 0.73 -26.45 16 2 C 0.02 0.64 5.32 -17.82 -0.09 0.55 16 3 Si 1.06 25.80 29.90 -169.99 -5.08 20.71 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.56 -15.84 7.99 -34.44 -0.28 -16.12 16 8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.04 1.10 0.46 -154.85 -0.07 1.03 16 10 C 0.09 2.10 4.96 37.16 0.18 2.28 16 11 O -0.35 -8.26 9.97 -35.23 -0.35 -8.61 16 12 C 0.10 1.79 6.06 36.01 0.22 2.01 16 13 C -0.07 -1.27 5.51 -104.62 -0.58 -1.85 16 14 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16 15 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 16 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 17 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 18 C -0.10 -1.56 9.70 -39.59 -0.38 -1.94 16 19 C -0.12 -2.71 7.22 -25.92 -0.19 -2.90 16 20 C -0.15 -2.96 7.73 -25.92 -0.20 -3.17 16 21 C -0.12 -2.71 5.94 -25.92 -0.15 -2.86 16 22 H 0.27 7.78 4.49 -40.82 -0.18 7.60 16 23 H 0.05 1.23 6.47 -51.93 -0.34 0.89 16 24 H 0.01 0.30 7.31 -51.93 -0.38 -0.08 16 25 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 26 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 33 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.06 1.15 7.61 -51.92 -0.40 0.76 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 1.04 7.42 -51.93 -0.39 0.66 16 37 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -30.87 305.08 -8.75 -39.62 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.52 Total: 1.17 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -3.12 Total: -31.04 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.73 Total: -26.45 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.35 Total: -8.61 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.87 -8.75 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038302188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.454 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds