Wall clock time and date at job start Mon Mar 30 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48511 * 109.46897 * 90.00366 * 3 2 1 5 5 H 1.48498 * 109.47241 * 330.00661 * 3 2 1 6 6 H 1.48500 * 109.46997 * 210.00114 * 3 2 1 7 7 C 1.37873 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 182.45726 * 7 2 1 9 9 C 1.50698 * 120.00029 * 2.46365 * 7 2 1 10 10 C 1.53007 * 112.84714 * 290.05215 * 9 7 2 11 11 O 1.42901 * 109.47237 * 304.41248 * 10 9 7 12 12 C 1.42895 * 113.99955 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47091 * 180.02562 * 12 11 10 14 14 C 1.38237 * 119.99753 * 269.73003 * 13 12 11 15 15 C 1.38243 * 119.99463 * 179.76477 * 14 13 12 16 16 C 1.38231 * 120.00050 * 0.51013 * 15 14 13 17 17 C 1.38244 * 119.99851 * 359.74105 * 16 15 14 18 18 C 1.38228 * 120.00005 * 0.02562 * 17 16 15 19 19 C 1.53780 * 113.61510 * 158.75206 * 9 7 2 20 20 C 1.53784 * 87.07984 * 220.01679 * 19 9 7 21 21 C 1.53777 * 113.61831 * 61.24709 * 9 7 2 22 22 H 0.96994 * 120.00044 * 174.85099 * 1 2 3 23 23 H 1.09001 * 109.46991 * 64.41219 * 10 9 7 24 24 H 1.08994 * 109.47202 * 184.41232 * 10 9 7 25 25 H 1.08997 * 109.47578 * 300.00039 * 12 11 10 26 26 H 1.09001 * 109.46798 * 60.00146 * 12 11 10 27 27 H 1.07997 * 120.00639 * 359.97438 * 14 13 12 28 28 H 1.08001 * 119.99689 * 180.22865 * 15 14 13 29 29 H 1.07999 * 120.00412 * 179.72484 * 16 15 14 30 30 H 1.07997 * 119.99521 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.99778 * 179.97438 * 18 17 16 32 32 H 1.09002 * 113.61598 * 334.56289 * 19 9 7 33 33 H 1.09003 * 113.61725 * 105.46686 * 19 9 7 34 34 H 1.09008 * 113.61007 * 270.88229 * 20 19 9 35 35 H 1.08998 * 113.61698 * 139.98281 * 20 19 9 36 36 H 1.08996 * 113.61583 * 254.52832 * 21 9 7 37 37 H 1.08998 * 113.61202 * 25.44025 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4002 5 1 1.4465 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0838 -1.1944 0.0396 9 6 1.2521 -2.4985 -0.0572 10 6 0.4876 -2.7999 1.2335 11 8 1.3915 -2.7725 2.3399 12 6 0.7753 -3.0424 3.6006 13 6 1.8152 -2.9873 4.6901 14 6 2.5025 -4.1320 5.0481 15 6 3.4597 -4.0804 6.0441 16 6 3.7222 -2.8864 6.6892 17 6 3.0311 -1.7427 6.3347 18 6 2.0774 -1.7933 5.3355 19 6 2.1003 -3.6774 -0.5626 20 6 0.8569 -4.1351 -1.3433 21 6 0.4038 -2.6656 -1.3289 22 1 -0.4850 -0.8366 -0.0754 23 1 -0.2887 -2.0489 1.3798 24 1 0.0299 -3.7866 1.1627 25 1 0.0052 -2.2962 3.7959 26 1 0.3233 -4.0340 3.5791 27 1 2.2940 -5.0659 4.5474 28 1 3.9993 -4.9739 6.3212 29 1 4.4669 -2.8469 7.4704 30 1 3.2359 -0.8100 6.8391 31 1 1.5372 -0.8999 5.0588 32 1 2.9304 -3.3759 -1.2014 33 1 2.4003 -4.3688 0.2249 34 1 0.2046 -4.7987 -0.7755 35 1 1.0821 -4.5129 -2.3406 36 1 -0.6657 -2.5402 -1.1600 37 1 0.7701 -2.0875 -2.1772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038302188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:11 Heat of formation + Delta-G solvation = -24.284898 kcal Electronic energy + Delta-G solvation = -17745.874016 eV Core-core repulsion = 15066.848324 eV Total energy + Delta-G solvation = -2679.025692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53094 -40.01001 -37.82119 -34.40870 -32.85217 -31.81053 -29.05087 -27.23566 -26.59828 -25.96075 -23.59664 -23.48698 -22.22488 -19.86178 -18.82536 -17.79967 -17.35411 -16.87039 -16.41242 -15.96702 -15.67422 -15.55108 -15.07278 -14.65603 -14.38351 -14.26092 -13.64961 -13.37633 -13.27416 -12.91827 -12.73712 -12.58711 -12.17587 -12.06226 -11.92895 -11.88885 -11.79541 -11.21067 -10.81590 -10.58951 -10.33955 -10.11289 -9.83963 -9.75375 -8.42437 -6.14741 0.34278 0.48152 1.50741 1.58509 1.75993 2.59701 2.66889 3.22532 3.29604 3.87570 3.88040 3.97778 4.08449 4.12526 4.13011 4.26921 4.28930 4.36440 4.43935 4.46850 4.64994 4.73617 4.78983 4.83097 4.93464 5.05261 5.05598 5.13364 5.13864 5.26990 5.53003 5.54961 5.57482 5.69114 5.82350 6.09140 6.21652 6.30672 6.50500 6.83072 7.59481 8.94208 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.007322 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.915564 B = 3823.247812 C = 4769.423261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.022 4.022 3 Si 1.102 2.898 4 H -0.283 1.283 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.573 4.573 8 H 0.029 0.971 9 C 0.018 3.982 10 C 0.100 3.900 11 O -0.382 6.382 12 C 0.095 3.905 13 C -0.104 4.104 14 C -0.112 4.112 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.120 4.120 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.131 0.869 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -8.531 10.219 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.220 4.220 3 Si 0.926 3.074 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.611 4.611 8 H 0.047 0.953 9 C 0.017 3.983 10 C 0.023 3.977 11 O -0.302 6.302 12 C 0.018 3.982 13 C -0.104 4.104 14 C -0.130 4.130 15 C -0.142 4.142 16 C -0.135 4.135 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.158 4.158 22 H 0.077 0.923 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.817 -6.856 10.254 12.912 hybrid contribution -0.425 -1.271 -0.245 1.362 sum 3.392 -8.127 10.008 13.331 Atomic orbital electron populations 1.70842 1.07364 1.30993 1.49006 1.26759 0.96757 1.05156 0.93339 0.83124 0.74421 0.72713 0.77130 1.20967 1.20773 1.20163 1.21958 0.93170 0.92604 1.53403 0.95285 1.19588 0.94449 0.94577 0.89646 1.22237 0.91473 0.96663 0.87289 1.88019 1.35618 1.92224 1.14309 1.21379 0.93653 0.99809 0.83341 1.19772 0.99100 0.95011 0.96510 1.21268 0.96183 0.97789 0.97794 1.21499 0.97434 0.99430 0.95857 1.21569 0.99523 0.92247 1.00192 1.21430 0.95926 1.00061 0.97212 1.21240 0.99009 0.96931 0.96922 1.22754 0.96704 0.97530 0.98871 1.22827 0.97393 0.95445 1.00521 1.22795 0.97784 0.96597 0.98672 0.92269 0.96188 0.94176 0.94208 0.91617 0.85108 0.82971 0.82800 0.83945 0.87279 0.91909 0.92810 0.89650 0.90463 0.94066 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.15 21.45 0.28 -56.82 16 2 C -0.02 -1.27 5.32 84.65 0.45 -0.82 16 3 Si 1.10 52.76 29.90 68.60 2.05 54.81 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.57 -33.15 7.99 25.60 0.20 -32.95 16 8 H 0.03 1.74 7.81 -2.91 -0.02 1.71 16 9 C 0.02 0.89 0.46 -52.40 -0.02 0.86 16 10 C 0.10 4.75 4.96 71.98 0.36 5.11 16 11 O -0.38 -18.14 9.97 -148.98 -1.49 -19.63 16 12 C 0.09 3.58 6.06 71.24 0.43 4.01 16 13 C -0.10 -3.56 5.51 -19.86 -0.11 -3.67 16 14 C -0.11 -3.20 9.70 22.27 0.22 -2.98 16 15 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 16 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 17 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 18 C -0.12 -4.06 9.70 22.27 0.22 -3.84 16 19 C -0.12 -5.19 7.22 31.12 0.22 -4.96 16 20 C -0.12 -4.56 7.73 31.12 0.24 -4.32 16 21 C -0.12 -5.49 5.94 31.12 0.18 -5.31 16 22 H 0.27 15.81 4.49 -92.71 -0.42 15.39 16 23 H 0.02 1.05 6.47 -2.39 -0.02 1.03 16 24 H 0.04 1.66 7.31 -2.39 -0.02 1.64 16 25 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 26 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 27 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 28 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 32 H 0.06 2.74 8.09 -2.39 -0.02 2.72 16 33 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 34 H 0.09 2.78 7.61 -2.38 -0.02 2.77 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.04 1.88 7.42 -2.39 -0.02 1.86 16 37 H 0.06 2.74 8.09 -2.39 -0.02 2.72 16 Total: -1.00 -67.95 305.08 5.29 -62.65 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.38 Total: 16.00 kcal Atomic # 6 Polarization: -60.08 SS G_CDS: 3.06 Total: -57.01 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.49 Total: -19.63 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Total: -67.95 5.29 -62.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038302188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.369 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds