Wall clock time and date at job start Mon Mar 30 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38387 * 120.00864 * 2 1 4 4 C 1.38250 * 119.76699 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.82436 * 179.81308 * 4 3 2 6 6 C 1.37973 * 120.34639 * 359.78587 * 4 3 2 7 7 C 1.50707 * 119.87830 * 180.02562 * 6 4 3 8 8 C 1.39240 * 120.23998 * 0.02834 * 6 4 3 9 9 C 1.37694 * 120.00794 * 179.97438 * 2 1 3 10 10 C 1.51644 * 132.18763 * 0.35508 * 9 2 1 11 11 C 1.54707 * 101.93157 * 164.60048 * 10 9 2 12 12 C 1.52997 * 110.75220 * 143.61599 * 11 10 9 13 13 C 1.50699 * 110.74675 * 266.78307 * 11 10 9 14 14 H 1.07996 * 119.99960 * 357.48676 * 13 11 10 15 15 C 1.37880 * 120.00410 * 177.48265 * 13 11 10 16 16 N 1.31508 * 120.00526 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 119.99572 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47094 * 90.00002 * 17 15 13 19 19 H 1.48501 * 109.47061 * 209.99862 * 17 15 13 20 20 H 1.48494 * 109.47241 * 329.99876 * 17 15 13 21 21 O 1.36134 * 129.88518 * 181.00652 * 8 6 4 22 22 H 1.09000 * 109.47219 * 270.00300 * 1 2 3 23 23 H 1.09006 * 109.46992 * 30.00441 * 1 2 3 24 24 H 1.09000 * 109.47623 * 150.00129 * 1 2 3 25 25 H 1.07997 * 120.12106 * 0.02682 * 3 2 1 26 26 H 1.09005 * 109.46622 * 269.97006 * 5 4 3 27 27 H 1.08992 * 109.47354 * 29.97410 * 5 4 3 28 28 H 1.09004 * 109.47239 * 149.97722 * 5 4 3 29 29 H 1.09002 * 109.46925 * 270.02169 * 7 6 4 30 30 H 1.08998 * 109.46886 * 30.02449 * 7 6 4 31 31 H 1.09001 * 109.46700 * 150.02133 * 7 6 4 32 32 H 1.09003 * 110.93872 * 46.44098 * 10 9 2 33 33 H 1.09006 * 110.96896 * 282.77258 * 10 9 2 34 34 H 1.09002 * 109.47153 * 59.99864 * 12 11 10 35 35 H 1.09001 * 109.46832 * 300.00055 * 12 11 10 36 36 H 1.09004 * 109.47261 * 180.02562 * 12 11 10 37 37 H 0.97001 * 120.00484 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1984 0.0000 4 6 3.5816 1.1925 -0.0005 5 6 4.3366 2.4967 -0.0048 6 6 4.2737 -0.0011 0.0034 7 6 5.7807 0.0049 0.0033 8 6 3.5847 -1.2111 0.0073 9 6 2.1957 -1.1924 0.0005 10 6 1.7320 -2.6362 -0.0058 11 6 3.0258 -3.3859 -0.4028 12 6 3.1258 -4.7225 0.3348 13 6 3.0850 -3.5955 -1.8939 14 1 2.2652 -3.2716 -2.5178 15 6 4.1860 -4.2009 -2.4619 16 7 4.2375 -4.3844 -3.7631 17 14 5.6039 -4.7618 -1.3827 18 1 5.3696 -6.1615 -0.9456 19 1 6.8712 -4.6894 -2.1533 20 1 5.6979 -3.8803 -0.1913 21 8 4.0605 -2.4864 0.0298 22 1 -0.3634 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6613 2.1349 0.0004 26 1 4.5187 2.8077 -1.0336 27 1 3.7485 3.2587 0.5065 28 1 5.2890 2.3670 0.5094 29 1 6.1440 0.0033 -1.0244 30 1 6.1405 0.8978 0.5146 31 1 6.1475 -0.8822 0.5198 32 1 0.9489 -2.7906 -0.7482 33 1 1.3931 -2.9414 0.9843 34 1 2.2670 -5.3435 0.0797 35 1 3.1385 -4.5441 1.4101 36 1 4.0434 -5.2321 0.0406 37 1 5.0122 -4.8099 -4.1626 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039149783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:32 Heat of formation + Delta-G solvation = -16.655956 kcal Electronic energy + Delta-G solvation = -18493.601603 eV Core-core repulsion = 15814.906727 eV Total energy + Delta-G solvation = -2678.694876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39348 -37.52571 -34.13465 -33.08270 -31.26949 -30.67507 -28.98064 -27.88171 -25.33098 -24.84703 -23.69372 -21.32897 -19.89296 -19.11605 -17.23598 -16.14769 -15.22652 -14.96722 -14.58247 -14.31801 -13.34357 -13.19511 -13.05567 -12.85541 -12.66325 -12.50697 -12.46671 -12.31886 -12.09227 -11.75792 -11.66488 -11.43590 -11.23512 -10.86233 -10.72501 -10.57809 -10.24626 -10.13770 -10.03626 -9.18386 -9.13291 -8.69051 -7.77219 -7.10973 -6.23010 -4.33257 1.90137 2.10502 3.25322 3.36643 3.54424 4.16855 4.37048 4.47610 5.15950 5.19552 5.26050 5.44366 5.47645 5.59363 5.63426 5.75466 5.82376 5.89961 5.95019 6.02489 6.08837 6.13243 6.19797 6.23647 6.26351 6.29875 6.39861 6.41402 6.52690 6.72850 6.81459 7.04916 7.08446 7.12691 7.28285 7.46753 7.51798 8.16872 8.40887 8.78853 9.39463 10.87352 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.009540 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.887324 B = 2934.371713 C = 3507.536286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.047 4.047 3 C -0.169 4.169 4 C -0.060 4.060 5 C -0.110 4.110 6 C -0.133 4.133 7 C -0.104 4.104 8 C 0.153 3.847 9 C -0.171 4.171 10 C -0.086 4.086 11 C 0.191 3.809 12 C -0.135 4.135 13 C -0.531 4.531 14 H 0.081 0.919 15 C 0.088 3.912 16 N -0.882 5.882 17 Si 0.878 3.122 18 H -0.282 1.282 19 H -0.297 1.297 20 H -0.232 1.232 21 O -0.307 6.307 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 8.657 8.857 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.047 4.047 3 C -0.187 4.187 4 C -0.060 4.060 5 C -0.166 4.166 6 C -0.134 4.134 7 C -0.160 4.160 8 C 0.105 3.895 9 C -0.172 4.172 10 C -0.123 4.123 11 C 0.156 3.844 12 C -0.192 4.192 13 C -0.567 4.567 14 H 0.099 0.901 15 C -0.118 4.118 16 N -0.518 5.518 17 Si 0.707 3.293 18 H -0.210 1.210 19 H -0.224 1.224 20 H -0.156 1.156 21 O -0.222 6.222 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.061 8.473 8.764 12.363 hybrid contribution 0.599 -0.442 0.147 0.759 sum -1.462 8.031 8.912 12.085 Atomic orbital electron populations 1.20711 0.91924 1.02362 1.01549 1.18964 0.95241 0.91488 0.98976 1.20471 0.93110 0.96575 1.08577 1.19234 0.93432 0.93619 0.99685 1.20781 0.99866 0.93981 1.02004 1.18809 0.95649 0.89682 1.09226 1.20640 0.91740 1.01733 1.01903 1.19414 0.91549 0.86730 0.91782 1.20654 0.94102 0.95068 1.07343 1.21697 0.99711 0.90293 1.00593 1.20779 0.81880 0.86574 0.95189 1.22012 1.02155 0.96992 0.98074 1.21094 1.06307 1.40466 0.88873 0.90061 1.25014 0.98057 0.93807 0.94910 1.69907 1.30225 1.41354 1.10348 0.87016 0.81080 0.79019 0.82168 1.20951 1.22436 1.15554 1.87133 1.42278 1.12289 1.80472 0.91794 0.92086 0.91612 0.86729 0.91462 0.92080 0.91430 0.91831 0.92132 0.91911 0.89904 0.91567 0.90890 0.93897 0.93051 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.91 36.01 0.36 -1.20 16 2 C -0.05 -0.84 5.87 -104.76 -0.61 -1.46 16 3 C -0.17 -2.84 9.37 -39.52 -0.37 -3.21 16 4 C -0.06 -1.02 5.87 -104.72 -0.61 -1.64 16 5 C -0.11 -1.42 9.59 36.00 0.35 -1.07 16 6 C -0.13 -2.64 5.90 -104.34 -0.62 -3.26 16 7 C -0.10 -1.81 9.56 36.01 0.34 -1.46 16 8 C 0.15 3.47 6.65 -38.96 -0.26 3.21 16 9 C -0.17 -3.59 6.06 -104.10 -0.63 -4.22 16 10 C -0.09 -1.78 5.73 -26.52 -0.15 -1.93 16 11 C 0.19 4.56 0.68 -90.87 -0.06 4.50 16 12 C -0.14 -2.88 8.42 37.16 0.31 -2.57 16 13 C -0.53 -14.88 8.83 -34.44 -0.30 -15.19 16 14 H 0.08 2.47 7.84 -52.49 -0.41 2.06 16 15 C 0.09 2.53 5.45 -17.82 -0.10 2.43 16 16 N -0.88 -26.75 13.96 55.43 0.77 -25.98 16 17 Si 0.88 22.07 24.01 -169.99 -4.08 17.99 16 18 H -0.28 -6.80 6.87 56.52 0.39 -6.42 16 19 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.23 -5.73 5.50 56.52 0.31 -5.42 16 21 O -0.31 -7.57 7.73 -20.17 -0.16 -7.73 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 24 H 0.06 0.96 7.58 -51.93 -0.39 0.56 16 25 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.07 0.80 5.91 -51.93 -0.31 0.50 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.85 5.91 -51.93 -0.31 0.54 16 31 H 0.06 1.15 8.00 -51.93 -0.42 0.73 16 32 H 0.08 1.70 7.54 -51.93 -0.39 1.30 16 33 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -31.16 290.27 -6.87 -38.03 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.42 Total: 0.38 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.36 Total: -27.07 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.16 Total: -7.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.08 Total: 17.99 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.16 -6.87 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039149783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.375 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds