Wall clock time and date at job start Mon Mar 30 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38387 * 120.00864 * 2 1 4 4 C 1.38250 * 119.76699 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.82436 * 179.81308 * 4 3 2 6 6 C 1.37973 * 120.34639 * 359.78587 * 4 3 2 7 7 C 1.50707 * 119.87830 * 180.02562 * 6 4 3 8 8 C 1.39240 * 120.23998 * 0.02834 * 6 4 3 9 9 C 1.37694 * 120.00794 * 179.97438 * 2 1 3 10 10 C 1.51644 * 132.18763 * 0.35508 * 9 2 1 11 11 C 1.54707 * 101.93157 * 164.60048 * 10 9 2 12 12 C 1.52997 * 110.75220 * 143.61599 * 11 10 9 13 13 C 1.50699 * 110.74675 * 266.78307 * 11 10 9 14 14 H 1.07996 * 119.99960 * 357.48676 * 13 11 10 15 15 C 1.37880 * 120.00410 * 177.48265 * 13 11 10 16 16 N 1.31508 * 120.00526 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 119.99572 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47094 * 90.00002 * 17 15 13 19 19 H 1.48501 * 109.47061 * 209.99862 * 17 15 13 20 20 H 1.48494 * 109.47241 * 329.99876 * 17 15 13 21 21 O 1.36134 * 129.88518 * 181.00652 * 8 6 4 22 22 H 1.09000 * 109.47219 * 270.00300 * 1 2 3 23 23 H 1.09006 * 109.46992 * 30.00441 * 1 2 3 24 24 H 1.09000 * 109.47623 * 150.00129 * 1 2 3 25 25 H 1.07997 * 120.12106 * 0.02682 * 3 2 1 26 26 H 1.09005 * 109.46622 * 269.97006 * 5 4 3 27 27 H 1.08992 * 109.47354 * 29.97410 * 5 4 3 28 28 H 1.09004 * 109.47239 * 149.97722 * 5 4 3 29 29 H 1.09002 * 109.46925 * 270.02169 * 7 6 4 30 30 H 1.08998 * 109.46886 * 30.02449 * 7 6 4 31 31 H 1.09001 * 109.46700 * 150.02133 * 7 6 4 32 32 H 1.09003 * 110.93872 * 46.44098 * 10 9 2 33 33 H 1.09006 * 110.96896 * 282.77258 * 10 9 2 34 34 H 1.09002 * 109.47153 * 59.99864 * 12 11 10 35 35 H 1.09001 * 109.46832 * 300.00055 * 12 11 10 36 36 H 1.09004 * 109.47261 * 180.02562 * 12 11 10 37 37 H 0.97001 * 120.00484 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1984 0.0000 4 6 3.5816 1.1925 -0.0005 5 6 4.3366 2.4967 -0.0048 6 6 4.2737 -0.0011 0.0034 7 6 5.7807 0.0049 0.0033 8 6 3.5847 -1.2111 0.0073 9 6 2.1957 -1.1924 0.0005 10 6 1.7320 -2.6362 -0.0058 11 6 3.0258 -3.3859 -0.4028 12 6 3.1258 -4.7225 0.3348 13 6 3.0850 -3.5955 -1.8939 14 1 2.2652 -3.2716 -2.5178 15 6 4.1860 -4.2009 -2.4619 16 7 4.2375 -4.3844 -3.7631 17 14 5.6039 -4.7618 -1.3827 18 1 5.3696 -6.1615 -0.9456 19 1 6.8712 -4.6894 -2.1533 20 1 5.6979 -3.8803 -0.1913 21 8 4.0605 -2.4864 0.0298 22 1 -0.3634 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6613 2.1349 0.0004 26 1 4.5187 2.8077 -1.0336 27 1 3.7485 3.2587 0.5065 28 1 5.2890 2.3670 0.5094 29 1 6.1440 0.0033 -1.0244 30 1 6.1405 0.8978 0.5146 31 1 6.1475 -0.8822 0.5198 32 1 0.9489 -2.7906 -0.7482 33 1 1.3931 -2.9414 0.9843 34 1 2.2670 -5.3435 0.0797 35 1 3.1385 -4.5441 1.4101 36 1 4.0434 -5.2321 0.0406 37 1 5.0122 -4.8099 -4.1626 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039149783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:32 Heat of formation + Delta-G solvation = -35.241207 kcal Electronic energy + Delta-G solvation = -18494.407520 eV Core-core repulsion = 15814.906727 eV Total energy + Delta-G solvation = -2679.500793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.97904 -39.03504 -35.55978 -35.04146 -33.10982 -32.14390 -30.33459 -29.19745 -27.34256 -26.31144 -25.06153 -22.84522 -21.69902 -20.56380 -19.17345 -17.72834 -17.07928 -16.63647 -16.07138 -15.83810 -15.00965 -14.76710 -14.64725 -14.28319 -14.16771 -14.08847 -13.77764 -13.54143 -13.52771 -13.35049 -13.20246 -12.75997 -12.58892 -12.46600 -12.41681 -12.27251 -11.99314 -11.82088 -11.50268 -11.09628 -10.91040 -10.81830 -9.16733 -8.69080 -8.44499 -6.57855 0.47872 0.62838 1.23944 1.32502 1.54631 2.28234 2.58293 2.89938 3.10482 3.77503 3.86234 4.06400 4.08825 4.24087 4.35884 4.44604 4.52214 4.56731 4.68560 4.69853 4.72422 4.78606 4.82292 4.85541 4.89798 4.97324 5.02519 5.08766 5.15892 5.19560 5.33195 5.47081 5.60168 5.65000 5.70702 5.84043 5.95842 6.17714 6.50296 6.67113 7.18881 8.69942 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.009540 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.887324 B = 2934.371713 C = 3507.536286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.164 4.164 4 C -0.061 4.061 5 C -0.108 4.108 6 C -0.154 4.154 7 C -0.101 4.101 8 C 0.102 3.898 9 C -0.196 4.196 10 C -0.079 4.079 11 C 0.183 3.817 12 C -0.135 4.135 13 C -0.533 4.533 14 H 0.038 0.962 15 C 0.036 3.964 16 N -0.931 5.931 17 Si 0.937 3.063 18 H -0.263 1.263 19 H -0.302 1.302 20 H -0.227 1.227 21 O -0.327 6.327 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.153 0.847 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 10.775 11.013 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.182 4.182 4 C -0.061 4.061 5 C -0.164 4.164 6 C -0.155 4.155 7 C -0.157 4.157 8 C 0.056 3.944 9 C -0.196 4.196 10 C -0.116 4.116 11 C 0.147 3.853 12 C -0.191 4.191 13 C -0.570 4.570 14 H 0.057 0.943 15 C -0.165 4.165 16 N -0.570 5.570 17 Si 0.764 3.236 18 H -0.189 1.189 19 H -0.230 1.230 20 H -0.151 1.151 21 O -0.242 6.242 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.170 0.830 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.404 10.599 10.937 15.419 hybrid contribution 0.591 -0.911 -0.542 1.214 sum -1.814 9.688 10.395 14.325 Atomic orbital electron populations 1.20767 0.89296 1.03071 1.03124 1.19479 0.97355 0.90966 0.97723 1.21001 0.93290 0.97559 1.06364 1.19800 0.94140 0.94462 0.97662 1.20870 1.00285 0.92120 1.03094 1.19288 0.96943 0.89817 1.09415 1.20656 0.90635 1.02766 1.01667 1.19933 0.92912 0.86744 0.94813 1.20889 0.93883 0.95970 1.08898 1.21596 0.97970 0.90462 1.01548 1.20768 0.83562 0.88227 0.92743 1.21999 1.02110 0.95455 0.99575 1.21312 1.04783 1.39501 0.91382 0.94344 1.25795 1.00623 0.94153 0.95919 1.70034 1.31325 1.43479 1.12151 0.86080 0.77562 0.79546 0.80427 1.18921 1.23039 1.15082 1.87011 1.42516 1.13497 1.81212 0.89632 0.89791 0.92532 0.82987 0.90575 0.89386 0.90350 0.92619 0.88487 0.93526 0.90783 0.88980 0.89500 0.90998 0.94301 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.91 71.24 0.71 -2.04 16 2 C -0.06 -1.88 5.87 -19.96 -0.12 -2.00 16 3 C -0.16 -4.96 9.37 22.31 0.21 -4.75 16 4 C -0.06 -1.91 5.87 -19.93 -0.12 -2.03 16 5 C -0.11 -2.32 9.59 71.24 0.68 -1.64 16 6 C -0.15 -5.98 5.90 -19.68 -0.12 -6.10 16 7 C -0.10 -3.43 9.56 71.24 0.68 -2.75 16 8 C 0.10 4.65 6.65 22.68 0.15 4.80 16 9 C -0.20 -8.16 6.06 -19.53 -0.12 -8.28 16 10 C -0.08 -3.27 5.73 30.73 0.18 -3.10 16 11 C 0.18 8.82 0.68 -10.96 -0.01 8.81 16 12 C -0.13 -5.59 8.42 71.98 0.61 -4.99 16 13 C -0.53 -31.11 8.83 25.60 0.23 -30.88 16 14 H 0.04 2.49 7.84 -2.91 -0.02 2.47 16 15 C 0.04 2.12 5.45 84.66 0.46 2.58 16 16 N -0.93 -58.90 13.96 21.45 0.30 -58.60 16 17 Si 0.94 46.72 24.01 68.60 1.65 48.37 16 18 H -0.26 -12.16 6.87 99.48 0.68 -11.48 16 19 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 20 H -0.23 -11.09 5.50 99.48 0.55 -10.54 16 21 O -0.33 -16.28 7.73 -95.08 -0.73 -17.01 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 23 H 0.08 1.78 8.09 -2.38 -0.02 1.76 16 24 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 25 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 26 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 28 H 0.08 1.53 5.91 -2.38 -0.01 1.51 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 2.48 5.91 -2.39 -0.01 2.47 16 31 H 0.05 1.70 8.00 -2.39 -0.02 1.68 16 32 H 0.07 3.11 7.54 -2.39 -0.02 3.10 16 33 H 0.09 3.25 7.92 -2.38 -0.02 3.23 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 36 H 0.04 1.69 3.27 -2.38 -0.01 1.69 16 37 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -71.05 290.27 5.51 -65.54 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.87 Total: 14.05 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 3.42 Total: -52.34 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.73 Total: -17.01 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.65 Total: 48.37 kcal Total: -71.05 5.51 -65.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039149783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.300 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds