Wall clock time and date at job start Mon Mar 30 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21434 * 120.00283 * 0.02562 * 10 9 8 12 12 C 1.41028 * 119.99842 * 180.02562 * 10 9 8 13 13 H 1.07997 * 120.00142 * 0.02562 * 12 10 9 14 14 C 1.40465 * 119.99994 * 180.02562 * 12 10 9 15 15 N 1.30521 * 119.99571 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99874 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47126 * 90.00177 * 16 14 12 18 18 H 1.48504 * 109.47078 * 209.99467 * 16 14 12 19 19 H 1.48493 * 109.47305 * 329.99701 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 21 21 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 22 22 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 23 23 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 24 24 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 26 26 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 27 27 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 29 29 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 32 32 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 33 33 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 34 34 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 35 35 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 36 36 H 1.08004 * 119.99934 * 179.72684 * 20 7 6 37 37 H 1.07999 * 120.00005 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 6 5.3030 -2.8442 6.3665 11 8 4.6464 -3.7379 6.8614 12 6 6.5346 -2.4714 6.9436 13 1 7.1184 -1.6763 6.5038 14 6 7.0021 -3.1342 8.0905 15 7 6.2963 -4.0947 8.6223 16 14 8.6337 -2.6408 8.8544 17 1 8.4055 -1.5772 9.8653 18 1 9.2508 -3.8220 9.5096 19 1 9.5419 -2.1312 7.7959 20 6 2.1532 -0.8940 3.6146 21 6 1.6980 -0.2384 2.4860 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.0878 -2.2035 0.1226 30 1 3.9082 -3.3645 2.1330 31 1 2.7358 -2.6006 5.5283 32 1 3.5755 -3.7868 4.5005 33 1 5.5203 -2.2585 4.3257 34 1 4.6807 -1.0723 5.3534 35 1 6.6193 -4.5526 9.4140 36 1 1.8881 -0.5282 4.5956 37 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:13 Heat of formation + Delta-G solvation = -52.282568 kcal Electronic energy + Delta-G solvation = -16810.437206 eV Core-core repulsion = 14130.197444 eV Total energy + Delta-G solvation = -2680.239762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48885 -36.97518 -35.62728 -32.82131 -32.03689 -30.67484 -28.70544 -27.26692 -26.77302 -23.94553 -22.57876 -21.42948 -19.78998 -18.97069 -16.41806 -16.06338 -15.41508 -15.15236 -14.73349 -14.09469 -13.76292 -13.63519 -13.44621 -13.21866 -13.02708 -12.96173 -12.45331 -12.06243 -11.76117 -11.49137 -11.32126 -11.24348 -11.14408 -10.84967 -10.78381 -10.55121 -10.51550 -10.19160 -10.06529 -9.89075 -8.88342 -8.66044 -8.21603 -7.30867 -6.18029 -4.85023 1.62140 1.66288 3.07151 3.15701 3.19551 4.00446 4.07024 4.29077 4.64903 4.75066 5.09732 5.18406 5.23225 5.35206 5.37542 5.47684 5.49971 5.61272 5.69045 5.71962 5.84373 5.88526 6.06508 6.10758 6.13555 6.21506 6.24755 6.36961 6.56654 6.70934 6.81114 6.84176 6.91175 7.06112 7.19262 7.29803 7.31623 8.13853 8.87787 8.95788 10.39674 10.63711 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048444 B = 0.003815 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.848850 B = 7338.573876 C = 7563.708765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.096 4.096 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.066 4.066 8 C -0.067 4.067 9 C -0.149 4.149 10 C 0.362 3.638 11 O -0.547 6.547 12 C -0.538 4.538 13 H 0.067 0.933 14 C 0.083 3.917 15 N -0.742 5.742 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.119 4.119 21 C -0.114 4.114 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 8.054 -14.375 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.096 4.096 5 C -0.135 4.135 6 C -0.137 4.137 7 C -0.067 4.067 8 C -0.104 4.104 9 C -0.188 4.188 10 C 0.257 3.743 11 O -0.436 6.436 12 C -0.570 4.570 13 H 0.086 0.914 14 C -0.140 4.140 15 N -0.371 5.371 16 Si 0.728 3.272 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.137 4.137 21 C -0.132 4.132 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.676 7.491 -14.039 17.667 hybrid contribution 0.977 0.401 0.318 1.103 sum -6.698 7.892 -13.721 17.188 Atomic orbital electron populations 1.21853 0.94654 1.01905 1.01631 1.20068 0.95693 0.95908 0.95553 1.21855 1.01318 0.95289 1.01624 1.19719 0.99142 0.96377 0.94388 1.20972 0.98543 0.95789 0.98231 1.21081 1.00275 1.00298 0.92001 1.20300 0.95500 0.95231 0.95620 1.20401 0.97831 0.99079 0.93113 1.22026 0.95048 1.00591 1.01111 1.19519 0.87094 0.83847 0.83852 1.90391 1.58874 1.31248 1.63055 1.20831 1.06540 1.18735 1.10906 0.91420 1.26021 0.97997 0.93549 0.96427 1.69962 1.35327 1.15667 1.16159 0.86429 0.82203 0.78884 0.79698 1.19492 1.20265 1.18635 1.21085 0.98356 0.95774 0.98457 1.20872 1.00540 0.99768 0.92000 0.92486 0.92718 0.92606 0.90839 0.92471 0.92521 0.92725 0.86687 0.86193 0.91131 0.91130 0.91977 0.91983 0.91729 0.86210 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.01 37.16 0.33 -0.93 16 2 C -0.05 -0.53 3.09 -91.78 -0.28 -0.82 16 3 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 4 C -0.10 -1.22 4.78 -104.63 -0.50 -1.72 16 5 C -0.12 -1.58 9.67 -39.58 -0.38 -1.96 16 6 C -0.12 -1.83 9.70 -39.58 -0.38 -2.22 16 7 C -0.07 -1.13 5.13 -104.62 -0.54 -1.67 16 8 C -0.07 -1.35 4.63 -27.88 -0.13 -1.48 16 9 C -0.15 -3.36 5.55 -27.89 -0.15 -3.51 16 10 C 0.36 10.25 6.90 -33.25 -0.23 10.02 16 11 O -0.55 -17.33 14.50 5.42 0.08 -17.25 16 12 C -0.54 -15.23 9.22 -37.69 -0.35 -15.57 16 13 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 14 C 0.08 2.28 5.50 -17.27 -0.10 2.19 16 15 N -0.74 -21.83 11.72 55.57 0.65 -21.17 16 16 Si 0.90 19.77 29.56 -169.99 -5.03 14.74 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.12 -1.83 9.70 -39.58 -0.38 -2.22 16 21 C -0.11 -1.52 8.71 -39.58 -0.34 -1.86 16 22 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 26 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.12 1.29 7.95 -52.49 -0.42 0.87 16 30 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 32 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 36 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 37 H 0.12 1.30 7.10 -52.49 -0.37 0.92 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -32.01 312.64 -8.42 -40.43 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.73 Total: 1.26 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -3.10 Total: -22.72 kcal Atomic # 7 Polarization: -21.83 SS G_CDS: 0.65 Total: -21.17 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.08 Total: -17.25 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.01 -8.42 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.857 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds