Wall clock time and date at job start Mon Mar 30 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21434 * 120.00283 * 0.02562 * 10 9 8 12 12 C 1.41028 * 119.99842 * 180.02562 * 10 9 8 13 13 H 1.07997 * 120.00142 * 0.02562 * 12 10 9 14 14 C 1.40465 * 119.99994 * 180.02562 * 12 10 9 15 15 N 1.30521 * 119.99571 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99874 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47126 * 90.00177 * 16 14 12 18 18 H 1.48504 * 109.47078 * 209.99467 * 16 14 12 19 19 H 1.48493 * 109.47305 * 329.99701 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 21 21 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 22 22 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 23 23 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 24 24 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 26 26 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 27 27 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 29 29 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 32 32 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 33 33 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 34 34 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 35 35 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 36 36 H 1.08004 * 119.99934 * 179.72684 * 20 7 6 37 37 H 1.07999 * 120.00005 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 6 5.3030 -2.8442 6.3665 11 8 4.6464 -3.7379 6.8614 12 6 6.5346 -2.4714 6.9436 13 1 7.1184 -1.6763 6.5038 14 6 7.0021 -3.1342 8.0905 15 7 6.2963 -4.0947 8.6223 16 14 8.6337 -2.6408 8.8544 17 1 8.4055 -1.5772 9.8653 18 1 9.2508 -3.8220 9.5096 19 1 9.5419 -2.1312 7.7959 20 6 2.1532 -0.8940 3.6146 21 6 1.6980 -0.2384 2.4860 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.0878 -2.2035 0.1226 30 1 3.9082 -3.3645 2.1330 31 1 2.7358 -2.6006 5.5283 32 1 3.5755 -3.7868 4.5005 33 1 5.5203 -2.2585 4.3257 34 1 4.6807 -1.0723 5.3534 35 1 6.6193 -4.5526 9.4140 36 1 1.8881 -0.5282 4.5956 37 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:13 Heat of formation + Delta-G solvation = -69.066414 kcal Electronic energy + Delta-G solvation = -16811.165008 eV Core-core repulsion = 14130.197444 eV Total energy + Delta-G solvation = -2680.967564 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62139 -39.02082 -36.73720 -34.84017 -33.62741 -31.80194 -30.32192 -28.64122 -27.93174 -25.46268 -23.72961 -22.69752 -21.08419 -20.66050 -18.43729 -17.39471 -17.01970 -16.53087 -15.97137 -15.41003 -15.27251 -15.10367 -14.70327 -14.44921 -14.37867 -14.14269 -13.54174 -13.36956 -13.32895 -12.99523 -12.72166 -12.64444 -12.45461 -12.24328 -12.14732 -12.03411 -11.89907 -11.72087 -11.46747 -11.42901 -10.97982 -9.78912 -9.62562 -9.28621 -8.28378 -7.10287 0.46310 0.53327 1.34509 1.36792 1.53769 2.19081 2.21178 2.86433 3.37771 3.76060 3.87559 3.98406 4.13872 4.18633 4.37358 4.42110 4.51029 4.55724 4.63046 4.65175 4.71432 4.85457 4.97231 5.00986 5.03662 5.09347 5.12905 5.19124 5.25436 5.26861 5.33828 5.38954 5.43586 5.59266 5.77486 5.83738 5.97218 6.16549 6.71937 6.81441 8.27584 8.51505 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048444 B = 0.003815 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.848850 B = 7338.573876 C = 7563.708765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.089 4.089 5 C -0.118 4.118 6 C -0.129 4.129 7 C -0.090 4.090 8 C -0.053 4.053 9 C -0.136 4.136 10 C 0.336 3.664 11 O -0.594 6.594 12 C -0.569 4.569 13 H 0.084 0.916 14 C 0.025 3.975 15 N -0.791 5.791 16 Si 0.995 3.005 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.249 1.249 20 C -0.129 4.129 21 C -0.112 4.112 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.281 0.719 36 H 0.120 0.880 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 10.025 -16.071 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.089 4.089 5 C -0.136 4.136 6 C -0.147 4.147 7 C -0.090 4.090 8 C -0.091 4.091 9 C -0.174 4.174 10 C 0.234 3.766 11 O -0.487 6.487 12 C -0.600 4.600 13 H 0.102 0.898 14 C -0.194 4.194 15 N -0.421 5.421 16 Si 0.813 3.187 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.172 1.172 20 C -0.147 4.147 21 C -0.130 4.130 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.057 9.480 -15.759 19.697 hybrid contribution 0.721 -0.199 0.780 1.080 sum -6.336 9.281 -14.979 18.726 Atomic orbital electron populations 1.21849 0.93669 1.01852 1.02567 1.20151 0.96431 0.96212 0.94343 1.21853 1.00864 0.94720 1.02563 1.20147 0.97605 0.95715 0.95404 1.21266 0.98045 0.95719 0.98577 1.21178 1.00678 1.00685 0.92137 1.20014 0.97845 0.96512 0.94657 1.20137 0.96353 0.98272 0.94322 1.21800 0.96391 1.00436 0.98788 1.20327 0.87303 0.83549 0.85401 1.90348 1.60108 1.33351 1.64936 1.21383 1.07120 1.19532 1.11940 0.89789 1.27281 1.02719 0.92875 0.96526 1.70096 1.38005 1.16989 1.16967 0.85067 0.75904 0.78893 0.78816 1.18245 1.19213 1.17221 1.21178 0.98446 0.95600 0.99490 1.21117 1.00241 1.00129 0.91531 0.92556 0.90866 0.93177 0.89695 0.92562 0.93248 0.90851 0.84125 0.86210 0.93086 0.93088 0.90833 0.90826 0.90864 0.86238 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 2 C -0.05 -0.87 3.09 -11.54 -0.04 -0.91 16 3 C -0.14 -2.11 9.01 71.98 0.65 -1.46 16 4 C -0.09 -2.03 4.78 -19.87 -0.09 -2.13 16 5 C -0.12 -2.95 9.67 22.27 0.22 -2.73 16 6 C -0.13 -3.95 9.70 22.27 0.22 -3.73 16 7 C -0.09 -3.13 5.13 -19.86 -0.10 -3.23 16 8 C -0.05 -2.27 4.63 29.85 0.14 -2.13 16 9 C -0.14 -6.30 5.55 29.85 0.17 -6.14 16 10 C 0.34 19.77 6.90 26.37 0.18 19.95 16 11 O -0.59 -39.72 14.50 -3.51 -0.05 -39.77 16 12 C -0.57 -32.72 9.22 23.50 0.22 -32.51 16 13 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 14 C 0.02 1.37 5.50 85.43 0.47 1.84 16 15 N -0.79 -47.81 11.72 21.91 0.26 -47.55 16 16 Si 0.99 40.30 29.56 68.60 2.03 42.32 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 C -0.13 -3.96 9.70 22.27 0.22 -3.74 16 21 C -0.11 -2.80 8.71 22.27 0.19 -2.60 16 22 H 0.06 0.82 7.39 -2.39 -0.02 0.80 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 26 H 0.06 0.84 7.39 -2.39 -0.02 0.82 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.14 2.74 7.95 -2.91 -0.02 2.72 16 30 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.05 2.30 8.04 -2.39 -0.02 2.29 16 32 H 0.05 2.30 8.04 -2.39 -0.02 2.29 16 33 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 35 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 36 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.14 2.75 7.10 -2.91 -0.02 2.73 16 Total: -1.00 -71.68 312.64 6.34 -65.34 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.03 Total: 20.59 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.08 Total: -40.92 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.26 Total: -47.55 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.05 Total: -39.77 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -71.68 6.34 -65.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.731 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds