Wall clock time and date at job start Mon Mar 30 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21437 * 120.00180 * 359.97438 * 10 9 8 12 12 C 1.41027 * 120.00099 * 180.02562 * 10 9 8 13 13 H 1.07992 * 120.00082 * 359.97438 * 12 10 9 14 14 C 1.40465 * 119.99754 * 179.97438 * 12 10 9 15 15 N 1.30513 * 120.00306 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99504 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47488 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47167 * 120.00150 * 16 14 12 19 19 H 1.48504 * 109.46929 * 239.99625 * 16 14 12 20 20 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 21 21 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 22 22 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 23 23 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 27 27 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 28 28 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 29 29 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 30 30 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 31 31 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 32 32 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 33 33 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 34 34 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 35 35 H 0.96999 * 120.00099 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.00274 * 179.72697 * 20 8 7 37 37 H 1.07997 * 120.00460 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4463 -1.9128 5.6562 12 6 2.7151 -3.1302 7.0999 13 1 3.6194 -3.6976 7.2625 14 6 1.7898 -2.9686 8.1444 15 7 0.6967 -2.2832 7.9477 16 14 2.1234 -3.7360 9.8145 17 1 3.4212 -4.4567 9.7779 18 1 2.1788 -2.6700 10.8469 19 1 1.0355 -4.6907 10.1467 20 6 3.2870 -0.6901 3.2695 21 6 2.8267 -0.0386 2.1406 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7208 -1.2495 31 1 1.0771 -2.5587 0.7384 32 1 1.8898 -3.7166 2.7539 33 1 3.5773 -3.7854 4.5012 34 1 4.4159 -2.3019 5.0152 35 1 0.0576 -2.1720 8.6688 36 1 3.9077 -0.1652 3.9806 37 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:21 Heat of formation + Delta-G solvation = -42.828585 kcal Electronic energy + Delta-G solvation = -17381.087346 eV Core-core repulsion = 14701.257540 eV Total energy + Delta-G solvation = -2679.829806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46260 -37.10022 -35.68874 -32.63594 -30.98943 -30.53632 -27.66104 -27.23228 -27.15390 -25.51936 -21.79878 -21.75948 -19.41299 -18.73894 -16.22466 -16.05939 -15.12351 -14.90422 -14.44253 -14.14849 -13.64927 -13.51694 -13.47694 -12.95714 -12.60418 -12.44316 -12.38248 -11.89615 -11.71144 -11.61479 -11.37557 -11.23001 -11.03231 -10.95555 -10.79092 -10.36771 -10.33052 -10.21569 -10.03060 -10.01394 -8.89443 -8.26147 -7.90791 -7.27789 -6.18360 -4.85947 2.03271 2.06119 3.05156 3.15370 3.20066 4.05162 4.28630 4.39889 4.80595 4.91270 5.12197 5.42390 5.47070 5.55396 5.58110 5.62628 5.67793 5.71145 5.82575 5.92687 5.94068 6.00520 6.11718 6.13143 6.25045 6.39159 6.41762 6.49062 6.56735 6.62060 6.79111 6.84964 7.08652 7.15200 7.29100 7.44834 7.67354 8.12063 8.86926 8.93582 10.39253 10.63122 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047523 B = 0.004647 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.051826 B = 6023.912343 C = 6127.266943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.034 4.034 9 C -0.132 4.132 10 C 0.368 3.632 11 O -0.535 6.535 12 C -0.539 4.539 13 H 0.069 0.931 14 C 0.083 3.917 15 N -0.741 5.741 16 Si 0.903 3.097 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.113 4.113 21 C -0.121 4.121 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.271 0.729 36 H 0.113 0.887 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 2.818 -12.907 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.199 4.199 4 C -0.193 4.193 5 C -0.094 4.094 6 C -0.134 4.134 7 C -0.130 4.130 8 C -0.034 4.034 9 C -0.170 4.170 10 C 0.261 3.739 11 O -0.422 6.422 12 C -0.571 4.571 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.370 5.370 16 Si 0.727 3.273 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.131 4.131 21 C -0.139 4.139 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.334 3.212 -12.987 13.580 hybrid contribution 0.253 -0.513 1.013 1.163 sum 2.587 2.700 -11.974 12.544 Atomic orbital electron populations 1.21884 0.94105 1.02009 1.01500 1.19411 0.95437 0.94760 0.92947 1.21940 1.01036 0.95344 1.01575 1.21870 1.01059 1.00185 0.96173 1.19540 0.99492 0.94173 0.96157 1.20766 1.00539 0.94365 0.97711 1.20912 0.97959 0.99945 0.94185 1.19790 0.95178 0.94031 0.94449 1.21330 1.01522 0.99399 0.94745 1.19404 0.85673 0.82000 0.86835 1.90430 1.27903 1.40197 1.83713 1.20824 1.06284 1.32915 0.97043 0.91309 1.25999 0.94081 0.93532 1.00314 1.69968 1.06746 1.28011 1.32311 0.86383 0.79500 0.79538 0.81840 1.18473 1.19948 1.19943 1.20939 1.00879 0.94388 0.96862 1.20983 0.98891 0.99328 0.94716 0.92368 0.92897 0.92508 0.92423 0.92877 0.92235 0.92550 0.92877 0.92678 0.87130 0.86841 0.90965 0.90958 0.91767 0.86844 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.29 37.16 0.31 -1.39 16 2 C -0.03 -0.33 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.61 7.13 37.16 0.27 -1.34 16 4 C -0.14 -1.49 8.29 37.16 0.31 -1.19 16 5 C -0.09 -1.52 4.76 -104.62 -0.50 -2.02 16 6 C -0.12 -2.00 8.71 -39.58 -0.34 -2.34 16 7 C -0.11 -2.21 9.70 -39.58 -0.38 -2.60 16 8 C -0.03 -0.73 4.37 -104.63 -0.46 -1.19 16 9 C -0.13 -2.96 5.70 -29.04 -0.17 -3.13 16 10 C 0.37 10.37 6.90 -33.26 -0.23 10.14 16 11 O -0.53 -17.11 14.56 5.42 0.08 -17.03 16 12 C -0.54 -15.08 9.22 -37.69 -0.35 -15.43 16 13 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 14 C 0.08 2.29 5.50 -17.27 -0.10 2.20 16 15 N -0.74 -21.82 11.72 55.57 0.65 -21.17 16 16 Si 0.90 19.65 29.56 -169.99 -5.03 14.63 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 C -0.11 -2.23 9.70 -39.58 -0.38 -2.61 16 21 C -0.12 -2.09 8.98 -39.58 -0.36 -2.45 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 25 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 28 H 0.06 0.62 7.39 -51.93 -0.38 0.23 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.11 1.64 7.10 -52.49 -0.37 1.27 16 32 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 33 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 34 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 35 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 36 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 37 H 0.12 1.72 5.89 -52.49 -0.31 1.41 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -32.57 307.21 -7.75 -40.32 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.58 Total: 2.41 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.51 Total: -23.80 kcal Atomic # 7 Polarization: -21.82 SS G_CDS: 0.65 Total: -21.17 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.08 Total: -17.03 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.57 -7.75 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.504 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds