Wall clock time and date at job start Mon Mar 30 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21437 * 120.00180 * 359.97438 * 10 9 8 12 12 C 1.41027 * 120.00099 * 180.02562 * 10 9 8 13 13 H 1.07992 * 120.00082 * 359.97438 * 12 10 9 14 14 C 1.40465 * 119.99754 * 179.97438 * 12 10 9 15 15 N 1.30513 * 120.00306 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99504 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47488 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47167 * 120.00150 * 16 14 12 19 19 H 1.48504 * 109.46929 * 239.99625 * 16 14 12 20 20 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 21 21 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 22 22 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 23 23 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 27 27 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 28 28 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 29 29 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 30 30 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 31 31 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 32 32 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 33 33 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 34 34 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 35 35 H 0.96999 * 120.00099 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.00274 * 179.72697 * 20 8 7 37 37 H 1.07997 * 120.00460 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4463 -1.9128 5.6562 12 6 2.7151 -3.1302 7.0999 13 1 3.6194 -3.6976 7.2625 14 6 1.7898 -2.9686 8.1444 15 7 0.6967 -2.2832 7.9477 16 14 2.1234 -3.7360 9.8145 17 1 3.4212 -4.4567 9.7779 18 1 2.1788 -2.6700 10.8469 19 1 1.0355 -4.6907 10.1467 20 6 3.2870 -0.6901 3.2695 21 6 2.8267 -0.0386 2.1406 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7208 -1.2495 31 1 1.0771 -2.5587 0.7384 32 1 1.8898 -3.7166 2.7539 33 1 3.5773 -3.7854 4.5012 34 1 4.4159 -2.3019 5.0152 35 1 0.0576 -2.1720 8.6688 36 1 3.9077 -0.1652 3.9806 37 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:21 Heat of formation + Delta-G solvation = -60.577386 kcal Electronic energy + Delta-G solvation = -17381.856992 eV Core-core repulsion = 14701.257540 eV Total energy + Delta-G solvation = -2680.599452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81815 -38.96092 -37.14488 -34.75225 -32.62558 -31.93486 -29.59187 -28.19167 -28.05943 -27.30065 -23.31800 -23.16956 -21.26220 -19.99449 -18.37872 -17.36500 -17.06734 -16.31885 -15.85132 -15.41268 -15.12906 -15.05615 -14.69803 -14.45229 -14.34109 -14.10506 -13.58171 -13.34286 -12.96468 -12.81832 -12.79325 -12.52168 -12.42012 -12.36459 -12.33320 -12.01841 -11.98058 -11.76698 -11.40106 -11.29971 -10.98261 -9.71353 -9.63984 -9.19411 -8.26280 -7.08643 0.58230 0.60319 1.33244 1.37081 1.55144 2.20990 2.21230 2.94237 3.38937 3.72603 3.86749 4.13092 4.16023 4.19399 4.22466 4.43988 4.61513 4.64361 4.71001 4.79942 4.82319 4.89135 4.91211 4.92921 5.04177 5.05570 5.13090 5.20198 5.22629 5.27733 5.32392 5.41836 5.48984 5.66358 5.79841 5.90296 5.98165 6.23952 6.73286 6.83176 8.30008 8.53371 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047523 B = 0.004647 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.051826 B = 6023.912343 C = 6127.266943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.087 4.087 6 C -0.117 4.117 7 C -0.132 4.132 8 C -0.067 4.067 9 C -0.120 4.120 10 C 0.345 3.655 11 O -0.584 6.584 12 C -0.568 4.568 13 H 0.086 0.914 14 C 0.027 3.973 15 N -0.792 5.792 16 Si 0.993 3.007 17 H -0.246 1.246 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.132 4.132 21 C -0.124 4.124 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.280 0.720 36 H 0.112 0.888 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 2.819 -13.795 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.199 4.199 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.150 4.150 8 C -0.067 4.067 9 C -0.158 4.158 10 C 0.242 3.758 11 O -0.476 6.476 12 C -0.600 4.600 13 H 0.104 0.896 14 C -0.192 4.192 15 N -0.422 5.422 16 Si 0.812 3.188 17 H -0.169 1.169 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.150 4.150 21 C -0.142 4.142 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.837 3.204 -13.891 14.535 hybrid contribution 0.077 -0.471 1.208 1.299 sum 2.914 2.732 -12.683 13.297 Atomic orbital electron populations 1.21896 0.93680 1.02004 1.01937 1.19527 0.95710 0.95498 0.91922 1.21947 1.01343 0.94320 1.02291 1.21849 1.01003 1.00205 0.95920 1.20039 0.97803 0.93865 0.97034 1.21062 1.00236 0.95009 0.97203 1.21080 0.98412 1.00277 0.95197 1.19821 0.97167 0.95012 0.94721 1.21086 1.00376 1.00635 0.93713 1.20155 0.85945 0.81007 0.88690 1.90380 1.30123 1.42235 1.84876 1.21381 1.07333 1.33350 0.97886 0.89617 1.27236 0.93223 0.93440 1.05262 1.70107 1.08169 1.29471 1.34431 0.85044 0.80022 0.78630 0.75120 1.16919 1.18969 1.18961 1.21111 1.01672 0.94170 0.98070 1.21307 0.98512 1.00448 0.93928 0.94157 0.90257 0.92789 0.92007 0.90570 0.93189 0.92609 0.90564 0.92793 0.84689 0.86990 0.89656 0.89652 0.90987 0.86980 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.29 71.98 0.60 -2.49 16 2 C -0.03 -0.61 0.85 -52.93 -0.05 -0.66 16 3 C -0.14 -2.82 7.13 71.98 0.51 -2.31 16 4 C -0.13 -2.50 8.29 71.98 0.60 -1.90 16 5 C -0.09 -2.74 4.76 -19.87 -0.09 -2.83 16 6 C -0.12 -3.98 8.71 22.27 0.19 -3.79 16 7 C -0.13 -5.32 9.70 22.27 0.22 -5.10 16 8 C -0.07 -2.95 4.37 -19.87 -0.09 -3.04 16 9 C -0.12 -5.57 5.70 29.10 0.17 -5.40 16 10 C 0.34 20.18 6.90 26.37 0.18 20.36 16 11 O -0.58 -39.12 14.56 -3.52 -0.05 -39.17 16 12 C -0.57 -32.39 9.22 23.50 0.22 -32.17 16 13 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 14 C 0.03 1.49 5.50 85.43 0.47 1.96 16 15 N -0.79 -47.90 11.72 21.91 0.26 -47.64 16 16 Si 0.99 40.19 29.56 68.60 2.03 42.22 16 17 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 C -0.13 -5.34 9.70 22.27 0.22 -5.13 16 21 C -0.12 -4.23 8.98 22.27 0.20 -4.03 16 22 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.22 7.39 -2.39 -0.02 1.21 16 25 H 0.06 1.18 7.51 -2.38 -0.02 1.16 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.09 7.51 -2.39 -0.02 1.07 16 28 H 0.05 1.06 7.39 -2.39 -0.02 1.04 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.14 3.81 7.10 -2.91 -0.02 3.79 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.09 3.61 8.09 -2.38 -0.02 3.59 16 34 H 0.09 3.61 8.09 -2.39 -0.02 3.59 16 35 H 0.28 15.12 8.29 -92.71 -0.77 14.35 16 36 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.14 3.99 5.89 -2.91 -0.02 3.97 16 Total: -1.00 -72.91 307.21 6.61 -66.30 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 1.04 Total: 24.81 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 3.34 Total: -46.53 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.26 Total: -47.64 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.05 Total: -39.17 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -72.91 6.61 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.725 kcal (2) G-P(sol) polarization free energy of solvation -72.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds