Wall clock time and date at job start Mon Mar 30 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38408 * 119.82408 * 59.72409 * 4 2 1 6 6 C 1.37886 * 120.17218 * 179.76639 * 5 4 2 7 7 C 1.39857 * 119.82463 * 0.52559 * 6 5 4 8 8 C 1.47163 * 120.17287 * 179.70390 * 7 6 5 9 9 O 1.21261 * 119.99679 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00311 * 0.02562 * 8 7 6 11 11 C 1.52995 * 109.47463 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47459 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99445 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00156 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00115 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46852 * 90.00405 * 16 14 12 18 18 H 1.48506 * 109.47351 * 210.00137 * 16 14 12 19 19 H 1.48498 * 109.47474 * 330.00506 * 16 14 12 20 20 C 1.39853 * 119.65463 * 359.73069 * 7 6 5 21 21 C 1.37893 * 119.82687 * 359.97438 * 20 7 6 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.08003 * 119.91352 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.08925 * 180.23068 * 6 5 4 31 31 H 1.09001 * 109.46937 * 300.00590 * 10 8 7 32 32 H 1.08997 * 109.46592 * 59.99830 * 10 8 7 33 33 H 1.09010 * 109.46532 * 300.00223 * 11 10 8 34 34 H 1.09001 * 109.47382 * 59.99701 * 11 10 8 35 35 H 0.96998 * 119.99913 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09265 * 179.97438 * 20 7 6 37 37 H 1.07994 * 119.91313 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6910 -0.2377 -2.4858 6 6 2.1506 -0.8793 -3.6164 7 6 2.9546 -2.0169 -3.4924 8 6 3.4439 -2.7114 -4.6940 9 8 4.1404 -3.6978 -4.5827 10 6 3.0794 -2.1969 -6.0627 11 6 3.7108 -3.0935 -7.1295 12 6 3.3469 -2.5786 -8.4982 13 1 2.7268 -1.6999 -8.5972 14 6 3.8045 -3.2298 -9.6239 15 7 3.4865 -2.7807 -10.8185 16 14 4.8764 -4.7501 -9.4526 17 1 4.0160 -5.9596 -9.4059 18 1 5.7957 -4.8413 -10.6153 19 1 5.6694 -4.6582 -8.2005 20 6 3.2906 -2.4914 -2.2204 21 6 2.8282 -1.8351 -1.0993 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.0658 0.6380 -2.5799 30 1 1.8865 -0.5071 -4.5953 31 1 1.9955 -2.2047 -6.1770 32 1 3.4495 -1.1782 -6.1782 33 1 4.7949 -3.0860 -7.0152 34 1 3.3404 -4.1121 -7.0138 35 1 3.8088 -3.2387 -11.6105 36 1 3.9107 -3.3695 -2.1164 37 1 3.0871 -2.2000 -0.1164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:15 Heat of formation + Delta-G solvation = -40.821364 kcal Electronic energy + Delta-G solvation = -16819.541126 eV Core-core repulsion = 14139.798360 eV Total energy + Delta-G solvation = -2679.742767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00590 -38.45871 -35.39130 -33.55212 -31.68775 -30.83405 -30.10505 -27.42929 -26.47913 -23.99135 -22.70722 -21.35809 -20.19986 -19.08689 -17.20648 -16.53304 -15.69117 -15.31714 -14.81732 -14.47709 -14.34533 -14.00559 -13.79392 -13.64326 -13.36982 -12.86498 -12.77069 -12.52545 -12.49957 -12.04799 -11.52614 -11.39876 -11.35394 -11.04593 -10.96825 -10.80818 -10.21207 -10.06822 -9.78476 -9.20689 -9.03508 -9.01576 -8.74374 -8.51101 -6.03133 -4.01816 0.77317 1.35890 2.70151 3.36867 3.43536 3.53445 3.84014 4.33670 4.46572 4.50235 4.54786 4.89978 4.90115 4.94575 5.14927 5.32057 5.33393 5.33921 5.34426 5.53926 5.59832 5.67195 5.68202 5.88864 5.93553 5.94260 5.96889 6.10979 6.11938 6.31344 6.46407 6.47878 6.78388 6.87678 7.32119 7.40969 7.76611 8.01344 8.52515 8.99886 9.59948 11.09768 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.004069 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.788862 B = 6878.963314 C = 7284.390010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.056 4.056 5 C -0.130 4.130 6 C -0.068 4.068 7 C -0.165 4.165 8 C 0.388 3.612 9 O -0.456 6.456 10 C -0.148 4.148 11 C -0.005 4.005 12 C -0.524 4.524 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.262 1.262 20 C -0.064 4.064 21 C -0.134 4.134 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.263 0.737 36 H 0.131 0.869 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 6.974 22.833 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.056 4.056 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.166 4.166 8 C 0.266 3.734 9 O -0.331 6.331 10 C -0.185 4.185 11 C -0.043 4.043 12 C -0.562 4.562 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.186 1.186 20 C -0.083 4.083 21 C -0.152 4.152 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.482 6.421 22.693 24.006 hybrid contribution 0.484 -0.735 -0.082 0.883 sum -3.999 5.686 22.611 23.655 Atomic orbital electron populations 1.21865 0.94119 1.02171 1.02054 1.20188 0.96134 0.96177 0.95323 1.21863 1.01354 0.94935 1.02052 1.20088 0.95877 0.94833 0.94797 1.20942 1.01405 1.00754 0.91696 1.21567 0.94214 0.93379 0.99427 1.20847 1.02069 0.98420 0.95270 1.23081 0.76622 0.82641 0.91064 1.90466 1.29752 1.23415 1.89511 1.21973 1.02814 1.02189 0.91569 1.19425 0.96424 0.94872 0.93537 1.21111 1.32588 1.13817 0.88657 0.90886 1.24986 0.95802 0.97320 0.95188 1.69915 1.45955 1.40788 0.97586 0.86802 0.81138 0.83637 0.78004 1.20232 1.21392 1.18627 1.21438 0.96750 0.98654 0.91423 1.20994 0.99512 0.96186 0.98536 0.92445 0.92364 0.92211 0.90434 0.92222 0.92360 0.92445 0.85655 0.84539 0.89055 0.89021 0.95984 0.96432 0.92721 0.85126 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.00 37.16 0.33 -0.68 16 2 C -0.06 -0.46 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -1.01 9.01 37.16 0.33 -0.68 16 4 C -0.06 -0.57 4.79 -104.50 -0.50 -1.07 16 5 C -0.13 -1.39 8.68 -39.65 -0.34 -1.74 16 6 C -0.07 -0.86 9.47 -39.11 -0.37 -1.23 16 7 C -0.17 -2.49 5.87 -105.06 -0.62 -3.10 16 8 C 0.39 7.20 7.12 -30.69 -0.22 6.98 16 9 O -0.46 -9.85 15.98 5.57 0.09 -9.76 16 10 C -0.15 -2.91 4.25 -27.89 -0.12 -3.03 16 11 C -0.01 -0.13 3.33 -27.89 -0.09 -0.22 16 12 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 16 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 20 C -0.06 -0.88 9.60 -39.10 -0.38 -1.25 16 21 C -0.13 -1.49 9.65 -39.65 -0.38 -1.87 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 25 H 0.08 0.54 7.86 -51.93 -0.41 0.14 16 26 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.13 1.08 7.07 -52.48 -0.37 0.71 16 30 H 0.14 1.58 7.05 -52.49 -0.37 1.21 16 31 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 32 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 33 H 0.02 0.57 7.16 -51.92 -0.37 0.20 16 34 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.13 1.78 7.65 -52.49 -0.40 1.38 16 37 H 0.12 1.08 7.93 -52.49 -0.42 0.67 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -32.77 309.20 -7.82 -40.59 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.61 Total: -4.00 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -3.06 Total: -22.12 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.77 Total: -27.36 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.77 -7.82 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.227 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds