Wall clock time and date at job start Mon Mar 30 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38407 * 119.82524 * 269.72423 * 5 4 2 7 7 C 1.37887 * 120.17370 * 179.77019 * 6 5 4 8 8 C 1.39859 * 119.82254 * 0.52445 * 7 6 5 9 9 C 1.47167 * 120.16861 * 179.70438 * 8 7 6 10 10 O 1.21257 * 119.99705 * 180.02562 * 9 8 7 11 11 C 1.50691 * 120.00309 * 0.02893 * 9 8 7 12 12 C 1.50699 * 109.47225 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00179 * 359.97438 * 12 11 9 14 14 C 1.37884 * 120.00187 * 179.97438 * 12 11 9 15 15 N 1.31508 * 119.99933 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00071 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46982 * 59.99916 * 16 14 12 18 18 H 1.48498 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47085 * 300.00180 * 16 14 12 20 20 C 1.39850 * 119.65717 * 359.73355 * 8 7 6 21 21 C 1.37895 * 119.82299 * 359.97438 * 20 8 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 30 30 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 31 31 H 1.08001 * 119.91382 * 0.02562 * 6 5 4 32 32 H 1.08006 * 120.09140 * 180.23724 * 7 6 5 33 33 H 1.09002 * 109.47106 * 299.99397 * 11 9 8 34 34 H 1.08997 * 109.47393 * 59.99537 * 11 9 8 35 35 H 0.97002 * 120.00399 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.08823 * 179.97438 * 20 8 7 37 37 H 1.08000 * 119.90978 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3267 0.1717 -1.7341 7 6 5.7015 0.0824 -1.6786 8 6 6.3027 -1.0290 -1.0790 9 6 7.7694 -1.1352 -1.0214 10 8 8.2873 -2.1004 -0.5011 11 6 8.6276 -0.0447 -1.6087 12 6 10.0815 -0.3931 -1.4200 13 1 10.3567 -1.3121 -0.9238 14 6 11.0607 0.4615 -1.8806 15 7 10.7257 1.5808 -2.4843 16 14 12.8629 0.0300 -1.6460 17 1 13.1574 -1.2549 -2.3298 18 1 13.7087 1.1046 -2.2249 19 1 13.1555 -0.1025 -0.1961 20 6 5.5028 -2.0390 -0.5350 21 6 4.1292 -1.9320 -0.5931 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1369 31 1 3.8610 1.0272 -2.2007 32 1 6.3126 0.8663 -2.1012 33 1 8.4124 0.0536 -2.6728 34 1 8.4119 0.8980 -1.1059 35 1 11.4145 2.1818 -2.8088 36 1 5.9596 -2.9004 -0.0707 37 1 3.5102 -2.7109 -0.1730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:27 Heat of formation + Delta-G solvation = -44.996526 kcal Electronic energy + Delta-G solvation = -16934.193002 eV Core-core repulsion = 14254.269187 eV Total energy + Delta-G solvation = -2679.923815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62102 -37.95312 -36.00104 -32.97905 -31.60320 -30.80308 -28.99237 -27.30553 -26.77368 -23.88022 -22.46251 -21.69678 -20.13181 -18.98903 -16.65734 -16.02793 -15.40371 -15.21765 -14.73531 -14.46389 -14.35601 -13.87075 -13.78172 -13.25789 -13.22658 -12.85880 -12.37738 -12.25844 -11.99579 -11.97112 -11.62965 -11.19980 -11.00111 -10.86820 -10.82327 -10.79333 -10.68087 -10.59823 -10.01921 -9.27159 -8.72743 -8.48963 -8.45845 -8.39003 -6.05486 -4.05972 1.12083 1.63597 3.17279 3.36724 3.39062 3.44424 4.19484 4.44863 4.62727 4.68714 4.80376 4.97487 5.06900 5.15768 5.23395 5.32361 5.36575 5.46326 5.50829 5.65287 5.67601 5.72546 5.73738 5.88403 5.92412 6.13542 6.16354 6.19436 6.22153 6.42684 6.66581 6.72682 6.87734 7.16458 7.24073 7.34864 7.93731 8.22937 8.67653 9.02873 9.58838 11.06604 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046388 B = 0.004170 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.458990 B = 6713.588203 C = 7102.490175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.077 4.077 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.068 4.068 8 C -0.159 4.159 9 C 0.389 3.611 10 O -0.463 6.463 11 C -0.021 4.021 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.070 4.070 21 C -0.136 4.136 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 -1.292 2.351 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.114 4.114 5 C -0.066 4.066 6 C -0.150 4.150 7 C -0.086 4.086 8 C -0.160 4.160 9 C 0.268 3.732 10 O -0.339 6.339 11 C -0.057 4.057 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.088 4.088 21 C -0.154 4.154 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.515 -1.638 2.539 19.748 hybrid contribution 0.923 -0.030 0.016 0.923 sum -18.592 -1.669 2.555 18.841 Atomic orbital electron populations 1.21852 0.95225 1.01588 1.01752 1.21084 0.95250 0.96717 0.97959 1.21938 1.02105 0.95494 1.01426 1.20711 0.91186 1.01112 0.98437 1.19993 0.95361 0.94290 0.96911 1.20994 0.93509 0.98945 1.01567 1.21631 0.94638 0.96913 0.95404 1.21147 0.97007 0.96096 1.01759 1.23403 0.87139 0.87593 0.75099 1.90352 1.76218 1.32052 1.35249 1.19528 0.95049 0.93395 0.97758 1.21159 0.89757 1.06779 1.37856 0.91018 1.24995 0.99488 0.94886 0.95028 1.69940 1.33603 1.11037 1.39311 0.86524 0.84197 0.77948 0.78597 1.20117 1.21306 1.20120 1.21437 0.93191 0.98025 0.96195 1.20912 0.94542 0.98276 1.01679 0.92682 0.92788 0.92709 0.91083 0.92750 0.92964 0.91752 0.91096 0.90947 0.85926 0.84450 0.92819 0.92825 0.92827 0.85388 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.09 -0.80 2.91 -90.62 -0.26 -1.07 16 3 C -0.15 -1.39 8.77 37.16 0.33 -1.07 16 4 C -0.08 -0.72 4.83 -27.89 -0.13 -0.86 16 5 C -0.07 -0.81 4.71 -104.50 -0.49 -1.30 16 6 C -0.13 -1.76 7.95 -39.65 -0.32 -2.07 16 7 C -0.07 -1.10 9.47 -39.10 -0.37 -1.47 16 8 C -0.16 -2.97 5.87 -105.06 -0.62 -3.59 16 9 C 0.39 8.99 7.11 -30.69 -0.22 8.77 16 10 O -0.46 -11.83 15.45 5.58 0.09 -11.74 16 11 C -0.02 -0.53 4.07 -29.04 -0.12 -0.65 16 12 C -0.52 -15.09 8.92 -34.44 -0.31 -15.40 16 13 H 0.07 2.15 6.75 -52.48 -0.35 1.80 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 16 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.07 -1.15 9.60 -39.10 -0.38 -1.53 16 21 C -0.14 -1.82 9.68 -39.65 -0.38 -2.20 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.69 6.28 -51.93 -0.33 0.36 16 29 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.12 1.35 8.04 -52.49 -0.42 0.93 16 32 H 0.14 2.22 7.05 -52.48 -0.37 1.85 16 33 H 0.05 1.39 8.09 -51.93 -0.42 0.97 16 34 H 0.05 1.39 8.09 -51.93 -0.42 0.97 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.13 2.10 7.65 -52.49 -0.40 1.69 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -31.23 311.48 -8.18 -39.41 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.65 Total: -2.24 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -3.03 Total: -21.58 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.23 -8.18 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.590 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds