Wall clock time and date at job start Mon Mar 30 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38407 * 119.82524 * 269.72423 * 5 4 2 7 7 C 1.37887 * 120.17370 * 179.77019 * 6 5 4 8 8 C 1.39859 * 119.82254 * 0.52445 * 7 6 5 9 9 C 1.47167 * 120.16861 * 179.70438 * 8 7 6 10 10 O 1.21257 * 119.99705 * 180.02562 * 9 8 7 11 11 C 1.50691 * 120.00309 * 0.02893 * 9 8 7 12 12 C 1.50699 * 109.47225 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00179 * 359.97438 * 12 11 9 14 14 C 1.37884 * 120.00187 * 179.97438 * 12 11 9 15 15 N 1.31508 * 119.99933 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00071 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46982 * 59.99916 * 16 14 12 18 18 H 1.48498 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47085 * 300.00180 * 16 14 12 20 20 C 1.39850 * 119.65717 * 359.73355 * 8 7 6 21 21 C 1.37895 * 119.82299 * 359.97438 * 20 8 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 30 30 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 31 31 H 1.08001 * 119.91382 * 0.02562 * 6 5 4 32 32 H 1.08006 * 120.09140 * 180.23724 * 7 6 5 33 33 H 1.09002 * 109.47106 * 299.99397 * 11 9 8 34 34 H 1.08997 * 109.47393 * 59.99537 * 11 9 8 35 35 H 0.97002 * 120.00399 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.08823 * 179.97438 * 20 8 7 37 37 H 1.08000 * 119.90978 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3267 0.1717 -1.7341 7 6 5.7015 0.0824 -1.6786 8 6 6.3027 -1.0290 -1.0790 9 6 7.7694 -1.1352 -1.0214 10 8 8.2873 -2.1004 -0.5011 11 6 8.6276 -0.0447 -1.6087 12 6 10.0815 -0.3931 -1.4200 13 1 10.3567 -1.3121 -0.9238 14 6 11.0607 0.4615 -1.8806 15 7 10.7257 1.5808 -2.4843 16 14 12.8629 0.0300 -1.6460 17 1 13.1574 -1.2549 -2.3298 18 1 13.7087 1.1046 -2.2249 19 1 13.1555 -0.1025 -0.1961 20 6 5.5028 -2.0390 -0.5350 21 6 4.1292 -1.9320 -0.5931 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1369 31 1 3.8610 1.0272 -2.2007 32 1 6.3126 0.8663 -2.1012 33 1 8.4124 0.0536 -2.6728 34 1 8.4119 0.8980 -1.1059 35 1 11.4145 2.1818 -2.8088 36 1 5.9596 -2.9004 -0.0707 37 1 3.5102 -2.7109 -0.1730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:26 Heat of formation + Delta-G solvation = -61.132412 kcal Electronic energy + Delta-G solvation = -16934.892707 eV Core-core repulsion = 14254.269187 eV Total energy + Delta-G solvation = -2680.623520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96973 -39.48610 -36.91645 -35.16745 -32.87143 -31.99245 -30.87739 -28.06584 -27.83825 -25.74572 -23.65127 -23.06061 -20.90253 -20.51594 -18.66647 -17.58533 -16.91169 -16.51723 -16.13875 -15.82056 -15.65523 -15.13340 -14.90272 -14.89430 -14.42173 -14.08381 -13.73647 -13.45166 -13.12785 -12.96625 -12.90137 -12.77484 -12.59469 -12.47654 -12.12913 -11.94678 -11.70515 -11.60197 -11.47402 -11.42968 -10.65411 -10.33312 -9.90274 -9.62716 -8.27426 -6.36502 -0.23047 0.46146 1.37449 1.40452 1.49180 1.59564 2.38089 2.86959 3.07184 3.36372 3.80521 3.86501 4.06470 4.10616 4.15427 4.37438 4.44321 4.49181 4.69876 4.81041 4.83601 4.87163 4.91905 5.04235 5.07235 5.11629 5.15056 5.17097 5.23882 5.36378 5.40834 5.47131 5.51672 5.54243 5.66894 5.69111 6.00560 6.09809 6.73266 6.84441 7.32373 8.84341 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046388 B = 0.004170 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.458990 B = 6713.588203 C = 7102.490175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.155 4.155 4 C -0.075 4.075 5 C -0.047 4.047 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.191 4.191 9 C 0.393 3.607 10 O -0.500 6.500 11 C -0.017 4.017 12 C -0.550 4.550 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.923 5.923 16 Si 0.964 3.036 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.077 4.077 21 C -0.130 4.130 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.268 0.732 36 H 0.121 0.879 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.197 -1.280 2.218 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.212 4.212 4 C -0.112 4.112 5 C -0.047 4.047 6 C -0.144 4.144 7 C -0.093 4.093 8 C -0.192 4.192 9 C 0.274 3.726 10 O -0.379 6.379 11 C -0.054 4.054 12 C -0.588 4.588 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.095 4.095 21 C -0.148 4.148 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.862 -1.612 2.400 22.052 hybrid contribution 1.501 0.016 0.050 1.502 sum -20.361 -1.596 2.450 20.570 Atomic orbital electron populations 1.21817 0.93693 1.02313 1.02251 1.21064 0.96462 0.96047 0.97237 1.21963 1.00865 0.96195 1.02201 1.20816 0.88389 1.02648 0.99373 1.20437 0.97316 0.92824 0.94101 1.21278 0.92077 1.00058 1.00979 1.21632 0.96158 0.95988 0.95486 1.20713 0.94093 0.98718 1.05686 1.23370 0.89468 0.86005 0.73756 1.90315 1.77439 1.33003 1.37122 1.19396 0.94439 0.94199 0.97384 1.21422 0.91985 1.06660 1.38702 0.92747 1.25815 1.03927 0.94649 0.94378 1.70021 1.35189 1.11614 1.39399 0.85522 0.78794 0.78146 0.78726 1.19659 1.19688 1.19676 1.21478 0.94579 0.97217 0.96229 1.21238 0.93235 0.99377 1.00933 0.92002 0.91976 0.92478 0.91808 0.91713 0.92631 0.93613 0.89286 0.89448 0.83156 0.85369 0.93665 0.93692 0.92294 0.86092 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 71.98 0.66 -0.85 16 2 C -0.09 -1.25 2.91 -10.79 -0.03 -1.28 16 3 C -0.15 -2.41 8.77 71.98 0.63 -1.78 16 4 C -0.08 -1.08 4.83 29.85 0.14 -0.93 16 5 C -0.05 -1.01 4.71 -19.79 -0.09 -1.10 16 6 C -0.13 -3.10 7.95 22.23 0.18 -2.92 16 7 C -0.07 -2.43 9.47 22.58 0.21 -2.22 16 8 C -0.19 -7.35 5.87 -20.15 -0.12 -7.47 16 9 C 0.39 19.17 7.11 28.03 0.20 19.37 16 10 O -0.50 -27.00 15.45 -2.96 -0.05 -27.05 16 11 C -0.02 -0.94 4.07 29.10 0.12 -0.82 16 12 C -0.55 -33.41 8.92 25.60 0.23 -33.19 16 13 H 0.05 3.43 6.75 -2.91 -0.02 3.41 16 14 C 0.01 0.66 5.46 84.66 0.46 1.12 16 15 N -0.92 -55.07 13.29 21.45 0.28 -54.79 16 16 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 17 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 20 C -0.08 -2.51 9.60 22.58 0.22 -2.29 16 21 C -0.13 -3.15 9.68 22.23 0.22 -2.94 16 22 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.04 0.88 6.28 -2.39 -0.01 0.86 16 29 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 31 H 0.15 2.85 8.04 -2.91 -0.02 2.83 16 32 H 0.13 4.33 7.05 -2.91 -0.02 4.31 16 33 H 0.05 2.48 8.09 -2.39 -0.02 2.46 16 34 H 0.05 2.47 8.09 -2.39 -0.02 2.45 16 35 H 0.27 14.97 8.31 -92.71 -0.77 14.19 16 36 H 0.12 4.05 7.65 -2.91 -0.02 4.03 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.34 311.48 6.32 -63.02 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.03 Total: 8.09 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.02 Total: -37.30 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.28 Total: -54.79 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.34 6.32 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.889 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds