Wall clock time and date at job start Mon Mar 30 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38400 * 119.91545 * 2 1 4 4 C 1.38406 * 120.34991 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.91226 * 180.02562 * 4 3 2 6 6 C 1.37880 * 120.17446 * 0.02562 * 4 3 2 7 7 C 1.50703 * 120.09032 * 179.97438 * 6 4 3 8 8 C 1.39855 * 119.82191 * 0.02562 * 6 4 3 9 9 C 1.47169 * 120.16748 * 180.02562 * 8 6 4 10 10 O 1.21255 * 119.99618 * 94.28419 * 9 8 6 11 11 C 1.50696 * 120.00173 * 274.27924 * 9 8 6 12 12 C 1.50705 * 109.47307 * 185.15629 * 11 9 8 13 13 H 1.07999 * 119.99333 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00246 * 179.97438 * 12 11 9 15 15 N 1.31512 * 119.99598 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00062 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47449 * 59.99820 * 16 14 12 18 18 H 1.48503 * 109.47130 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.47129 * 299.99981 * 16 14 12 20 20 C 1.37890 * 119.91176 * 179.72837 * 2 1 3 21 21 C 1.50695 * 120.09054 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46978 * 89.99645 * 1 2 3 23 23 H 1.08993 * 109.46865 * 329.99907 * 1 2 3 24 24 H 1.09002 * 109.47067 * 209.99596 * 1 2 3 25 25 H 1.08001 * 119.82259 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.47164 * 89.99912 * 5 4 3 27 27 H 1.09001 * 109.47364 * 210.00332 * 5 4 3 28 28 H 1.09004 * 109.47085 * 329.99900 * 5 4 3 29 29 H 1.08997 * 109.46894 * 84.22945 * 7 6 4 30 30 H 1.08999 * 109.47262 * 204.23016 * 7 6 4 31 31 H 1.09003 * 109.46935 * 324.22692 * 7 6 4 32 32 H 1.08998 * 109.47218 * 305.15827 * 11 9 8 33 33 H 1.09002 * 109.47228 * 65.15377 * 11 9 8 34 34 H 0.97002 * 119.99997 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47248 * 84.26238 * 21 20 2 36 36 H 1.09000 * 109.47383 * 204.26217 * 21 20 2 37 37 H 1.09004 * 109.47081 * 324.26539 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1996 0.0000 4 6 3.5813 1.2101 0.0005 5 6 4.3229 2.5220 0.0011 6 6 4.2833 0.0234 0.0005 7 6 5.7903 0.0370 0.0005 8 6 3.5932 -1.1930 -0.0005 9 6 4.3349 -2.4641 0.0000 10 8 4.5714 -3.0275 1.0474 11 6 4.8002 -3.0656 -1.3010 12 6 5.4166 -4.4155 -1.0384 13 1 5.4659 -4.7996 -0.0302 14 6 5.9165 -5.1606 -2.0852 15 7 5.8559 -4.6930 -3.3129 16 14 6.6798 -6.8341 -1.7598 17 1 5.6700 -7.7257 -1.1349 18 1 7.1385 -7.4267 -3.0418 19 1 7.8385 -6.6800 -0.8436 20 6 2.1946 -1.1952 0.0057 21 6 1.4412 -2.5003 0.0113 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 0.8899 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 1.6530 2.1324 -0.0004 26 1 4.5012 2.8381 1.0289 27 1 5.2766 2.4006 -0.5124 28 1 3.7271 3.2764 -0.5128 29 1 6.1526 0.1437 1.0230 30 1 6.1621 -0.8967 -0.4212 31 1 6.1460 0.8741 -0.6002 32 1 3.9500 -3.1790 -1.9735 33 1 5.5413 -2.4108 -1.7595 34 1 6.2080 -5.2169 -4.0494 35 1 1.1710 -2.7682 -1.0102 36 1 2.0707 -3.2815 0.4373 37 1 0.5368 -2.3952 0.6107 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:51 Heat of formation + Delta-G solvation = -58.132337 kcal Electronic energy + Delta-G solvation = -17728.669250 eV Core-core repulsion = 15048.175823 eV Total energy + Delta-G solvation = -2680.493427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39130 -39.47115 -35.92702 -35.17811 -33.82503 -31.09429 -30.50350 -30.02925 -27.22298 -26.00209 -25.15837 -23.71980 -20.38915 -20.15083 -18.61084 -17.57605 -17.03685 -16.64411 -16.06458 -15.76435 -15.26809 -15.09837 -14.69494 -14.41983 -14.17465 -13.96222 -13.69121 -13.65714 -13.54172 -13.25634 -12.98328 -12.92160 -12.76715 -12.64553 -12.55638 -12.32819 -12.17963 -11.94069 -11.64741 -11.54229 -10.67484 -10.36093 -9.52405 -9.23189 -8.28921 -6.39687 0.22597 0.37841 1.06521 1.36437 1.39564 1.48380 2.36219 2.62510 3.04623 3.26887 3.79303 3.81550 3.96946 4.12374 4.30032 4.40283 4.42991 4.58591 4.60890 4.68368 4.70640 4.76469 4.84502 4.88880 4.96966 4.98920 5.02482 5.07928 5.16562 5.18985 5.20476 5.46366 5.48626 5.63155 5.64271 5.69258 6.01088 6.09890 6.66805 6.74820 7.29574 8.82750 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.006331 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.540097 B = 4421.957643 C = 4968.657931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.166 4.166 9 C 0.419 3.581 10 O -0.491 6.491 11 C -0.014 4.014 12 C -0.547 4.547 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.965 3.035 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.271 1.271 20 C -0.081 4.081 21 C -0.120 4.120 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 14.902 4.529 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.093 4.093 5 C -0.167 4.167 6 C -0.080 4.080 7 C -0.179 4.179 8 C -0.167 4.167 9 C 0.298 3.702 10 O -0.368 6.368 11 C -0.051 4.051 12 C -0.585 4.585 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.789 3.211 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.081 4.081 21 C -0.176 4.176 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.177 0.823 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.735 14.563 4.893 17.673 hybrid contribution 0.722 -1.333 -0.183 1.527 sum -8.013 13.230 4.710 16.169 Atomic orbital electron populations 1.20886 0.88392 1.04017 1.03391 1.20001 0.97866 0.91435 0.99997 1.21375 0.93155 0.98341 0.99481 1.20006 0.94388 0.94936 0.99963 1.20887 1.00344 0.92093 1.03359 1.19925 0.96400 0.91522 1.00201 1.20958 0.90877 1.02988 1.03064 1.20569 0.95219 0.94644 1.06299 1.23161 0.72895 0.83063 0.91108 1.90360 1.48583 1.61550 1.36275 1.19446 0.97368 0.96406 0.91884 1.21351 1.39995 1.02918 0.94242 0.92585 1.25835 0.95996 1.02289 0.94556 1.70047 1.46763 1.39799 0.99659 0.85509 0.78930 0.78876 0.77816 1.19488 1.19664 1.19573 1.19926 0.91107 0.96856 1.00253 1.20907 1.00486 0.93041 1.03166 0.90063 0.89368 0.90901 0.82333 0.90000 0.90893 0.89425 0.90383 0.94177 0.88060 0.94462 0.93934 0.92246 0.90361 0.94653 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.60 71.24 0.68 -1.33 16 2 C -0.09 -2.49 5.87 -19.91 -0.12 -2.61 16 3 C -0.11 -2.53 9.34 22.35 0.21 -2.32 16 4 C -0.09 -2.48 5.87 -19.91 -0.12 -2.60 16 5 C -0.11 -2.00 9.60 71.24 0.68 -1.32 16 6 C -0.08 -2.80 5.92 -19.56 -0.12 -2.91 16 7 C -0.12 -4.01 9.19 71.24 0.65 -3.36 16 8 C -0.17 -6.82 5.56 -20.15 -0.11 -6.93 16 9 C 0.42 20.86 3.54 28.03 0.10 20.96 16 10 O -0.49 -27.04 16.09 -2.95 -0.05 -27.08 16 11 C -0.01 -0.79 5.27 29.10 0.15 -0.64 16 12 C -0.55 -33.28 8.92 25.60 0.23 -33.05 16 13 H 0.06 3.51 6.77 -2.91 -0.02 3.49 16 14 C 0.01 0.72 5.46 84.65 0.46 1.18 16 15 N -0.92 -55.63 13.29 21.45 0.28 -55.34 16 16 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 C -0.08 -2.85 5.92 -19.56 -0.12 -2.96 16 21 C -0.12 -3.97 9.18 71.23 0.65 -3.31 16 22 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 24 H 0.07 1.29 6.02 -2.39 -0.01 1.27 16 25 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.30 6.03 -2.39 -0.01 1.28 16 28 H 0.09 1.19 8.08 -2.38 -0.02 1.17 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.58 5.93 -2.39 -0.01 1.56 16 31 H 0.10 2.61 6.19 -2.39 -0.01 2.59 16 32 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 2.44 7.25 -2.39 -0.02 2.42 16 34 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.03 1.40 6.79 -2.39 -0.02 1.38 16 37 H 0.10 2.59 6.19 -2.38 -0.01 2.58 16 Total: -1.00 -72.27 303.91 6.58 -65.69 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.07 Total: 10.04 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.25 Total: -41.20 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.28 Total: -55.34 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.27 6.58 -65.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.557 kcal (2) G-P(sol) polarization free energy of solvation -72.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds