Wall clock time and date at job start Mon Mar 30 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46847 * 2 1 4 4 C 1.38406 * 119.82381 * 90.00111 * 3 2 1 5 5 C 1.37891 * 120.17173 * 179.72470 * 4 3 2 6 6 C 1.39859 * 119.82107 * 0.25337 * 5 4 3 7 7 C 1.47168 * 120.16523 * 180.02562 * 6 5 4 8 8 O 1.21246 * 120.00377 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99360 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.47025 * 35.00343 * 9 7 6 11 11 C 1.50704 * 109.46576 * 155.00287 * 9 7 6 12 12 H 1.07998 * 120.00291 * 5.43999 * 11 9 7 13 13 C 1.37879 * 119.99714 * 185.44746 * 11 9 7 14 14 N 1.31513 * 119.99911 * 9.55020 * 13 11 9 15 15 Si 1.86800 * 119.99965 * 189.54761 * 13 11 9 16 16 H 1.48501 * 109.46772 * 84.99470 * 15 13 11 17 17 H 1.48493 * 109.47248 * 204.99131 * 15 13 11 18 18 H 1.48506 * 109.47271 * 324.99926 * 15 13 11 19 19 C 1.52992 * 109.47328 * 274.99758 * 9 7 6 20 20 C 1.53001 * 109.47047 * 65.85623 * 19 9 7 21 21 C 1.39847 * 119.65959 * 0.02562 * 6 5 4 22 22 C 1.37894 * 119.82478 * 359.97438 * 21 6 5 23 23 H 1.09000 * 109.47018 * 299.99493 * 1 2 3 24 24 H 1.08995 * 109.47144 * 60.00067 * 1 2 3 25 25 H 1.08995 * 109.46690 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47018 * 240.00507 * 2 1 3 27 27 H 1.08995 * 109.47144 * 119.99933 * 2 1 3 28 28 H 1.08001 * 119.91551 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.08682 * 180.23394 * 5 4 3 30 30 H 0.96999 * 119.99681 * 179.97438 * 14 13 11 31 31 H 1.09005 * 109.47236 * 185.84979 * 19 9 7 32 32 H 1.08997 * 109.47679 * 305.85249 * 19 9 7 33 33 H 1.09005 * 109.47617 * 179.97438 * 20 19 9 34 34 H 1.09007 * 109.47025 * 300.00020 * 20 19 9 35 35 H 1.09003 * 109.46959 * 59.99704 * 20 19 9 36 36 H 1.07999 * 120.08892 * 180.02562 * 21 6 5 37 37 H 1.07998 * 119.91186 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0698 1.2008 5 6 2.7267 3.3680 1.2091 6 6 2.9614 4.0305 0.0000 7 6 3.4582 5.4158 0.0001 8 8 3.6655 5.9855 1.0501 9 6 3.7103 6.1259 -1.3051 10 1 2.9694 5.8101 -2.0395 11 6 3.6067 7.6146 -1.0951 12 1 3.4684 8.0113 -0.1002 13 6 3.6883 8.4702 -2.1732 14 7 3.6674 7.9895 -3.3972 15 14 3.8286 10.3121 -1.8954 16 1 5.2531 10.6733 -1.6820 17 1 3.3079 11.0331 -3.0845 18 1 3.0365 10.6939 -0.6986 19 6 5.1113 5.7787 -1.8122 20 6 5.1723 4.2909 -2.1639 21 6 2.7216 3.3698 -1.2090 22 6 2.2566 2.0717 -1.2007 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0808 1.5566 2.1336 29 1 2.9089 3.8718 2.1469 30 1 3.7244 8.5915 -4.1556 31 1 5.3336 6.3712 -2.6998 32 1 5.8438 5.9989 -1.0357 33 1 6.1704 4.0436 -2.5256 34 1 4.9500 3.6984 -1.2763 35 1 4.4398 4.0708 -2.9405 36 1 2.9008 3.8747 -2.1468 37 1 2.0713 1.5600 -2.1335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:12 Heat of formation + Delta-G solvation = -34.498341 kcal Electronic energy + Delta-G solvation = -17642.910795 eV Core-core repulsion = 14963.442215 eV Total energy + Delta-G solvation = -2679.468580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67635 -37.84139 -34.56746 -33.86799 -31.85662 -30.55493 -29.39942 -27.77098 -24.82208 -23.34907 -22.58137 -21.50745 -20.63344 -18.56491 -16.72722 -16.01726 -15.34967 -15.13830 -14.64242 -14.19930 -14.08121 -13.73373 -13.26137 -13.22446 -13.16826 -12.61552 -12.37573 -12.26056 -11.66977 -11.59529 -11.41529 -11.24291 -10.95902 -10.87831 -10.68661 -10.62573 -10.18779 -9.98875 -9.78958 -9.01023 -8.66919 -8.40923 -8.38352 -8.26356 -6.07267 -4.06994 1.14975 1.67483 3.19810 3.33575 3.39032 3.44653 4.23436 4.43754 4.74022 4.86437 5.02360 5.21734 5.22889 5.26843 5.28713 5.48934 5.64477 5.66693 5.77855 5.94371 6.04011 6.09003 6.10643 6.21097 6.24889 6.28481 6.45221 6.69070 6.74924 6.76773 6.88495 6.92544 7.09198 7.19674 7.53294 7.67203 7.93567 8.24171 8.68120 8.98587 9.56330 11.02503 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035879 B = 0.005508 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.207783 B = 5082.360200 C = 5260.584456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.067 4.067 4 C -0.139 4.139 5 C -0.070 4.070 6 C -0.159 4.159 7 C 0.398 3.602 8 O -0.465 6.465 9 C 0.010 3.990 10 H 0.059 0.941 11 C -0.511 4.511 12 H 0.068 0.932 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.101 4.101 20 C -0.161 4.161 21 C -0.064 4.064 22 C -0.138 4.138 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.145 0.855 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -14.856 3.021 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.067 4.067 4 C -0.157 4.157 5 C -0.089 4.089 6 C -0.160 4.160 7 C 0.277 3.723 8 O -0.340 6.340 9 C -0.009 4.009 10 H 0.077 0.923 11 C -0.549 4.549 12 H 0.086 0.914 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.140 4.140 20 C -0.218 4.218 21 C -0.082 4.082 22 C -0.156 4.156 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.043 -14.493 3.386 15.191 hybrid contribution 0.087 0.945 -0.021 0.949 sum -2.956 -13.548 3.365 14.269 Atomic orbital electron populations 1.21748 0.94743 1.01460 1.02454 1.20566 0.96181 0.92856 1.02677 1.20043 0.97521 0.95828 0.93352 1.20891 1.02372 0.95083 0.97339 1.21437 0.95271 0.93996 0.98152 1.21106 1.03485 0.97778 0.93669 1.23367 0.71486 0.84602 0.92889 1.90343 1.40676 1.67292 1.35734 1.19164 0.95344 0.96074 0.90321 0.92336 1.21078 1.50022 0.89486 0.94279 0.91419 1.24921 0.94871 0.98942 0.94986 1.69952 1.49954 1.35177 0.97747 0.86574 0.78536 0.85134 0.77636 1.20486 1.21328 1.19842 1.21408 0.97275 0.93487 1.01794 1.22276 1.00161 0.98882 1.00437 1.21922 0.93498 0.94073 0.98723 1.20980 1.01994 0.95304 0.97366 0.92537 0.92371 0.92586 0.91034 0.91190 0.86274 0.85443 0.92883 0.89646 0.94116 0.94295 0.93453 0.92834 0.83762 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.90 37.16 0.37 -0.93 16 2 C -0.09 -0.82 6.05 -27.88 -0.17 -0.99 16 3 C -0.07 -0.86 5.14 -104.50 -0.54 -1.40 16 4 C -0.14 -1.91 9.68 -39.65 -0.38 -2.29 16 5 C -0.07 -1.18 9.60 -39.10 -0.38 -1.56 16 6 C -0.16 -3.03 4.94 -105.06 -0.52 -3.55 16 7 C 0.40 9.19 5.90 -30.68 -0.18 9.01 16 8 O -0.46 -11.84 15.78 5.59 0.09 -11.76 16 9 C 0.01 0.24 1.62 -92.92 -0.15 0.09 16 10 H 0.06 1.49 6.69 -51.93 -0.35 1.14 16 11 C -0.51 -14.39 8.28 -34.44 -0.29 -14.67 16 12 H 0.07 2.00 7.00 -52.49 -0.37 1.63 16 13 C 0.06 1.78 5.15 -17.82 -0.09 1.69 16 14 N -0.89 -24.86 12.17 55.43 0.67 -24.19 16 15 Si 0.89 21.64 29.55 -169.99 -5.02 16.61 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.10 -2.31 5.28 -26.73 -0.14 -2.46 16 20 C -0.16 -2.96 8.24 37.16 0.31 -2.65 16 21 C -0.06 -1.07 7.06 -39.11 -0.28 -1.35 16 22 C -0.14 -1.92 9.68 -39.65 -0.38 -2.30 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.13 2.13 7.65 -52.49 -0.40 1.72 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.09 2.13 6.79 -51.93 -0.35 1.78 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.84 5.29 -51.93 -0.27 0.57 16 35 H 0.05 0.93 6.53 -51.93 -0.34 0.59 16 36 H 0.14 2.47 4.24 -52.49 -0.22 2.24 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -29.83 300.82 -7.79 -37.61 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.24 Total: 0.53 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.82 Total: -23.35 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.67 Total: -24.19 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.83 -7.79 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.114 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds